David Landsman

35 papers Journal 31Unranked 4
YearRankTypeTitle / Venue / Authors
2022 — conf
BeamR: Beam Reweighing with Attribute Discriminators for Controllable Text Generation.
AACL/IJCNLP (Findings)
David Landsman, Jerry Zikun Chen, Hussain Zaidi
2021 J jnl
COG database update: focus on microbial diversity, model organisms, and widespread pathogens.
Nucleic Acids Res.
Michael Y. Galperin, Yuri I. Wolf, Kira S. Makarova, Roberto Vera Alvarez, David Landsman, Eugene V. Koonin
2021 — conf
Social Activity Networks Shaping St. Petersburg.
HICSS
David Landsman, Philipp Kats, Aleksandra Nenko, Sergei Kudinov, Stanislav Sobolevsky
2019 J jnl
A flexible integer linear programming formulation for scheduling clinician on-call service in hospitals.
CoRR
David Landsman, Huiting Ma, Jesse Knight, Kevin Gough, Sharmistha Mishra
2019 J jnl
TPMCalculator: one-step software to quantify mRNA abundance of genomic features.
Bioinform.
Roberto Vera Alvarez, Lorinc Sándor Pongor, Leonardo Mariño-Ramírez, David Landsman
2018 J jnl
A data-supported history of bioinformatics tools.
CoRR
Clément Levin, Emeric Dynomant, Bruno J. Gonzalez, Laurent Mouchard, David Landsman, Eivind Hovig, Kristian Vlahovicek
2018 J jnl
SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome.
Bioinform.
Roberto Vera Alvarez, Shan Li, David Landsman, Ivan Ovcharenko
2017 J jnl
Workflow and web application for annotating NCBI BioProject transcriptome data.
Database J. Biol. Databases Curation
Roberto Vera Alvarez, Newton Medeiros Vidal, Gina A. Garzón-Martínez, Luz S. Barrero, David Landsman, Leonardo Mariño-Ramírez
2016 J jnl
HistoneDB 2.0: a histone database with variants - an integrated resource to explore histones and their variants.
Database J. Biol. Databases Curation
Eli J. Draizen, Alexey K. Shaytan, Leonardo Mariño-Ramírez, Paul B. Talbert, David Landsman, Anna R. Panchenko
2016 J jnl
Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules.
BMC Bioinform.
Natalia Acevedo-Luna, Leonardo Mariño-Ramírez, Armand Halbert, Ulla Hansen, David Landsman, John L. Spouge
2015 J jnl
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Database J. Biol. Databases Curation
Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend
2015 J jnl
Log-odds sequence logos.
Bioinform.
Yi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul
2013 J jnl
Obituary: In memory of Jack Leunissen.
Briefings Bioinform.
Jingchu Luo, Harm Nijveen, Teresa K. Attwood, David Phillip Judge, Sándor Pongor, David Landsman, Martin J. Bishop
2012 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
2011 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
2011 J jnl
Ten Simple Rules for Developing a Short Bioinformatics Training Course.
PLoS Comput. Biol.
Allegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider
2011 J jnl
The Histone Database: an integrated resource for histones and histone fold-containing proteins.
Database J. Biol. Databases Curation
Leonardo Mariño-Ramírez, Kevin M. Levine, Mario Morales, Suiyuan Zhang, Travis Moreland, Andreas D. Baxevanis, David Landsman
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Nucleic Acids Res.
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2010 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
2009 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko, Jian Ye
2008 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Martin Shumway, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
2007 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
2006 J jnl
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements.
BMC Bioinform.
Kannan Tharakaraman, Leonardo Mariño-Ramírez, Sergey Sheetlin, David Landsman, John L. Spouge
2005 — conf
Alignments anchored on genomic landmarks can aid in the identification of regulatory elements.
ISMB (Supplement of Bioinformatics)
Kannan Tharakaraman, Leonardo Mariño-Ramírez, Sergey Sheetlin, David Landsman, John L. Spouge
2002 J jnl
The Histone Database.
Nucleic Acids Res.
Steven A. Sullivan, Daniel W. Sink, Kenneth L. Trout, Izabela Makalowska, Patrick M. Taylor, Andreas D. Baxevanis, David Landsman
2000 J jnl
The Histone Database: a comprehensive WWW resource for histones and histone fold-containing proteins.
Nucleic Acids Res.
Steven A. Sullivan, L. Aravind, Izabela Makalowska, Andreas D. Baxevanis, David Landsman
1999 — conf
Comparison of Clustering Metrics and Unsupervised Learning Algorithms on Genome-Wide Gene Expression Level Data.
AAAI/IAAI
Sonia M. Leach, Lawrence Hunter, David Landsman
1999 J jnl
Curved DNA in promoter sequences.
Silico Biol.
Andrei E. Gabrielian, David Landsman, Alexander Bolshoy
1999 J jnl
Histone Sequence Database: sequences, structures, post-translational modifications and genetic loci.
Nucleic Acids Res.
Izabela Makalowska, Erik S. Ferlanti, Andreas D. Baxevanis, David Landsman
1999 J jnl
Homology model building of prospero-type homeodomains.
Silico Biol.
Sharmila Banerjee-Basu, David Landsman, Andreas D. Baxevanis
1998 J jnl
Histone Sequence Database: new histone fold family members.
Nucleic Acids Res.
Andreas D. Baxevanis, David Landsman
1998 J jnl
Homology model building of Hho1p supports its role as a yeast histone H1 protein.
Silico Biol.
Andreas D. Baxevanis, David Landsman
1997 J jnl
Histone and histone fold sequences and structures: a database.
Nucleic Acids Res.
Andreas D. Baxevanis, David Landsman
1996 J jnl
Histone Sequence Database: a compilation of highly-conserved nucleoprotein sequences.
Nucleic Acids Res.
Andreas D. Baxevanis, David Landsman