David L. Wild

28 papers A* 1B 2Misc 3Journal 20Unranked 1
YearRankTypeTitle / Venue / Authors
2020 J jnl
ParticleMDI: particle Monte Carlo methods for the cluster analysis of multiple datasets with applications to cancer subtype identification.
Adv. Data Anal. Classif.
Nathan Cunningham, Jim E. Griffin, David L. Wild
2018 J jnl
Bringing numerous methods for expression and promoter analysis to a public cloud computing service.
Bioinform.
Krzysztof Polanski, Bo Gao, Sam A. Mason, Paul Brown, Sascha Ott, Katherine J. Denby, David L. Wild
2016 J jnl
Exploiting molecular dynamics in Nested Sampling simulations of small peptides.
Comput. Phys. Commun.
Nikolas S. Burkoff, Robert J. N. Baldock, Csilla Várnai, David L. Wild, Gábor Csányi
2015 J jnl
Inferring orthologous gene regulatory networks using interspecies data fusion.
Bioinform.
Christopher A. Penfold, Jonathan B. A. Millar, David L. Wild
2013 J jnl
Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure.
Bioinform.
Nikolas S. Burkoff, Csilla Várnai, David L. Wild
2012 J jnl
Bayesian correlated clustering to integrate multiple datasets.
Bioinform.
Paul D. W. Kirk, Jim E. Griffin, Richard S. Savage, Zoubin Ghahramani, David L. Wild
2012 J jnl
Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks.
Bioinform.
Christopher A. Penfold, Vicky Buchanan-Wollaston, Katherine J. Denby, David L. Wild
2011 J jnl
Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements.
BMC Bioinform.
Emma J. Cooke, Richard S. Savage, Paul D. W. Kirk, Robert Darkins, David L. Wild
2010 J jnl
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series.
J. Comput. Biol.
Oliver Stegle, Katherine J. Denby, Emma J. Cooke, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt
2010 J jnl
Discovering transcriptional modules by Bayesian data integration.
Bioinform.
Richard S. Savage, Zoubin Ghahramani, Jim E. Griffin, Bernard J. de la Cruz, David L. Wild
2010 — ch.
Inferring Transcriptional Networks Using Prior Biological Knowledge and Constrained State-Space Models.
Learning and Inference in Computational Systems Biology
John Angus, Matthew J. Beal, Juan Li, Claudia Rangel, David L. Wild
2009 B conf
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series.
RECOMB
Oliver Stegle, Katherine J. Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt
2009 J jnl
An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching.
J. Integr. Bioinform.
Mansoor A. S. Saqi, Richard J. B. Dobson, Preben Kraben, David A. Hodgson, David L. Wild
2009 — conf
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series.
GCB
Oliver Stegle, Katherine J. Denby, David L. Wild, Stuart McHattie, Andrew Meade, Zoubin Ghahramani, Karsten M. Borgwardt
2009 J jnl
Modeling and Visualizing Uncertainty in Gene Expression Clusters Using Dirichlet Process Mixtures.
IEEE ACM Trans. Comput. Biol. Bioinform.
Carl Edward Rasmussen, Bernard J. de la Cruz, Zoubin Ghahramani, David L. Wild
2009 J jnl
R/BHC: fast Bayesian hierarchical clustering for microarray data.
BMC Bioinform.
Richard S. Savage, Katherine A. Heller, Yang Xu, Zoubin Ghahramani, William M. Truman, Murray Grant, Katherine J. Denby, David L. Wild
2008 J jnl
CRANKITE: A fast polypeptide backbone conformation sampler.
Source Code Biol. Medicine
Alexei A. Podtelezhnikov, David L. Wild
2006 J jnl
Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure and Contact Map Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Wei Chu, Zoubin Ghahramani, Alexei A. Podtelezhnikov, David L. Wild
2006 Misc conf
Identifying Protein Complexes in High-Throughput Protein Interaction Screens Using an Infinite Latent Feature Model.
Pacific Symposium on Biocomputing
Wei Chu, Zoubin Ghahramani, Roland Krause, David L. Wild
2005 J jnl
A Bayesian approach to reconstructing genetic regulatory networks with hidden factors.
Bioinform.
Matthew J. Beal, Francesco Falciani, Zoubin Ghahramani, Claudia Rangel, David L. Wild
2005 J jnl
Biomarker discovery in microarray gene expression data with Gaussian processes.
Bioinform.
Wei Chu, Zoubin Ghahramani, Francesco Falciani, David L. Wild
2004 A* conf
A graphical model for protein secondary structure prediction.
ICML
Wei Chu, Zoubin Ghahramani, David L. Wild
2004 Misc conf
Clustering Protein Sequence and Structure Space with Infinite Gaussian Mixture Models.
Pacific Symposium on Biocomputing
Ananya Dubey, Seungwoo Hwang, Claudia Rangel, Carl Edward Rasmussen, Zoubin Ghahramani, David L. Wild
2004 J jnl
Modeling T-cell activation using gene expression profiling and state-space models.
Bioinform.
Claudia Rangel, John Angus, Zoubin Ghahramani, Maria Lioumi, Elizabeth Sotheran, Alessia Gaiba, David L. Wild, Francesco Falciani
2004 B conf
Protein secondary structure prediction using sigmoid belief networks to parameterize segmental semi-Markov models.
ESANN
Wei Chu, Zoubin Ghahramani, David L. Wild
2004 Misc conf
The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures.
Pacific Symposium on Biocomputing
Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook
2002 J jnl
A Bayesian network model for protein fold and remote homologue recognition.
Bioinform.
Alpan Raval, Zoubin Ghahramani, David L. Wild
1999 J jnl
Protein analyst - a distributed object environment for protein sequence and structure analysis.
Bioinform.
Mansoor A. S. Saqi, David L. Wild, M. J. Hartshorn