David L. Robertson

30 papers C 2Journal 26Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
HIHISIV: a database of gene expression in HIV and SIV host immune response.
BMC Bioinform.
Raquel Lopes Costa, Luiz M. R. Gadelha Jr., Mirela D'arc, Marcelo Ribeiro-Alves, David L. Robertson, Jean-Marc Schwartz, Marcelo A. Soares, Fábio Porto
2024 J jnl
Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules.
PLoS Comput. Biol.
Kieran D. Lamb, Martha M. Luka, Megan Saathoff, Richard J. Orton, My V. T. Phan, Matthew Cotten, Ke Yuan, David L. Robertson
2024 J jnl
Prediction of virus-host associations using protein language models and multiple instance learning.
PLoS Comput. Biol.
Dan Liu, Francesca Young, Kieran D. Lamb, David L. Robertson, Ke Yuan
2022 J jnl
In silico prediction of HIV-1-host molecular interactions and their directionality.
PLoS Comput. Biol.
Haiting Chai, Quan Gu, Joseph Hughes, David L. Robertson
2021 J jnl
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Briefings Bioinform.
Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz
2020 J jnl
Predicting host taxonomic information from viral genomes: A comparison of feature representations.
PLoS Comput. Biol.
Francesca Young, Simon Rogers, David L. Robertson
2018 J jnl
Using set theory to reduce redundancy in pathway sets.
BMC Bioinform.
Ruth Alexandra Stoney, Jean-Marc Schwartz, David L. Robertson, Goran Nenadic
2017 C conf
De novo assembly of nucleotide sequences in a compressed feature space.
CIBCB
Avraam Tapinos, David L. Robertson
2017 J jnl
Kindel: indel-aware consensus for nucleotide sequence alignments.
J. Open Source Softw.
Bede Constantinides, David L. Robertson
2017 C conf
Marginalised stack denoising autoencoders for metagenomic data binning.
CIBCB
Samaneh Kouchaki, Santosh Tirunagari, Avraam Tapinos, David L. Robertson
2017 J jnl
T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes.
BMC Bioinform.
Michail Tsimpidis, Georgios Bachoumis, Kalliopi Mimouli, Zaharoula Kyriakopoulou, David L. Robertson, Panayotis Markoulatos, Grigoris D. Amoutzias
2016 — conf
Local binary patterns as a feature descriptor in alignment-free visualisation of metagenomic data.
SSCI
Samaneh Kouchaki, Santosh Tirunagari, Avraam Tapinos, David L. Robertson
2015 J jnl
A logical model of HIV-1 interactions with the T-cell activation signalling pathway.
Bioinform.
Oyebode J. Oyeyemi, Oluwafemi Davies, David L. Robertson, Jean-Marc Schwartz
2015 J jnl
Ambiguity and variability of database and software names in bioinformatics.
J. Biomed. Semant.
Geraint Duck, Aleksandar Kovacevic, David L. Robertson, Robert Stevens, Goran Nenadic
2014 J jnl
Extracting patterns of database and software usage from the bioinformatics literature.
Bioinform.
Geraint Duck, Goran Nenadic, Andy Brass, David L. Robertson, Robert Stevens
2013 J jnl
Cataloging the biomedical world of pain through semi-automated curation of molecular interactions.
Database J. Biol. Databases Curation
Daniel G. Jamieson, Phoebe M. Roberts, David L. Robertson, Ben Sidders, Goran Nenadic
2013 J jnl
bioNerDS: exploring bioinformatics' database and software use through literature mining.
BMC Bioinform.
Geraint Duck, Goran Nenadic, Andy Brass, David L. Robertson, Robert Stevens
2012 J jnl
Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.
BMC Bioinform.
John P. Archer, Greg Baillie, Simon J. Watson, Paul Kellam, Andrew Rambaut, David L. Robertson
2012 J jnl
Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database.
Database J. Biol. Databases Curation
Daniel G. Jamieson, Martin Gerner, Farzaneh Sarafraz, Goran Nenadic, David L. Robertson
2010 J jnl
Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems.
PLoS Comput. Biol.
Jamie I. MacPherson, Jonathan E. Dickerson, John W. Pinney, David L. Robertson
2010 J jnl
The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time - An Ultra-Deep Approach.
PLoS Comput. Biol.
John P. Archer, Andrew Rambaut, Bruce E. Taillon, P. Richard Harrigan, Marilyn Lewis, David L. Robertson
2010 J jnl
The biological context of HIV-1 host interactions reveals subtle insights into a system hijack.
BMC Syst. Biol.
Jonathan E. Dickerson, John W. Pinney, David L. Robertson
2009 J jnl
JNets: Exploring networks by integrating annotation.
BMC Bioinform.
Jamie I. MacPherson, John W. Pinney, David L. Robertson
2008 J jnl
Identifying the Important HIV-1 Recombination Breakpoints.
PLoS Comput. Biol.
John P. Archer, John W. Pinney, Jun Fan, Etienne Simon-Loriere, Eric J. Arts, Matteo Negroni, David L. Robertson
2008 J jnl
Methodology capture: discriminating between the "best" and the rest of community practice.
BMC Bioinform.
James M. Eales, John W. Pinney, Robert D. Stevens, David L. Robertson
2007 J jnl
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.
BMC Syst. Biol.
Grigoris D. Amoutzias, Elgar Pichler, Nina Mian, David De Graaf, Anastasia Imsiridou, Marc Robinson-Rechavi, Erich Bornberg-Bauer, David L. Robertson, Stephen G. Oliver
2007 J jnl
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network.
BMC Bioinform.
Brian J. Holden, John W. Pinney, Simon C. Lovell, Grigoris D. Amoutzias, David L. Robertson
2007 J jnl
SHARKview: a tool for the visualization of systems biology data.
BMC Syst. Biol.
John W. Pinney, John M. Starkovich, Peter Li, David L. Robertson
2007 J jnl
Similarity in expression accounts for correlated evolution of interacting proteins.
BMC Syst. Biol.
Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson
2000 — conf
The Detection of Putative Recombinant Sequences Using BLAST.
German Conference on Bioinformatics
Alia Benkahla, David L. Robertson, Emmanuel Beaudoing, Jean-Michel Claverie