David Kleinfeld

18 papers Journal 14Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
Fast and accessible morphology-free functional fluorescence imaging analysis.
PLoS Comput. Biol.
Alejandro Estrada Berlanga, Gabrielle Y. Kang, Amanda Kwok, Thomas Broggini, Jennifer Lawlor, Kishore V. Kuchibhotla, David Kleinfeld, Gal Mishne, Adam S. Charles
2024 J jnl
CellBoost: A pipeline for machine assisted annotation in neuroanatomy.
AI Open
Kui Qian, Beth Friedman, Jun Takatoh, Alexander Groisman, Fan Wang, David Kleinfeld, Yoav Freund
2024 — conf
Towards Explainable Automated Neuroanatomy.
MICCAI (3)
Kui Qian, Litao Qiao, Beth Friedman, Edward O'Donnell, David Kleinfeld, Yoav Freund
2024 J jnl
Towards Explainable Automated Neuroanatomy.
CoRR
Kui Qian, Litao Qiao, Beth Friedman, Edward O'Donnell, David Kleinfeld, Yoav Freund
2021 J jnl
Contribution of animal models toward understanding resting state functional connectivity.
NeuroImage
Patricia Pais-Roldán, Celine Mateo, Wen-Ju Pan, Benjamin T. Acland, David Kleinfeld, Lawrence H. Snyder, Xin Yu, Shella D. Keilholz
2021 J jnl
Voxelized simulation of cerebral oxygen perfusion elucidates hypoxia in aged mouse cortex.
PLoS Comput. Biol.
Grant Hartung, Shoale Badr, Mohammad Moeini, Frédéric Lesage, David Kleinfeld, Ali Alaraj, Andreas A. Linninger
2018 J jnl
Comparing two classes of biological distribution systems using network analysis.
PLoS Comput. Biol.
Lia Papadopoulos, Pablo Blinder, Henrik Ronellenfitsch, Florian Klimm, Eleni Katifori, David Kleinfeld, Danielle S. Bassett
2018 J jnl
Robust Landmark Detection for Alignment of Mouse Brain Section Images.
CoRR
Yuncong Chen, David Kleinfeld, Martyn Goulding, Yoav Freund
2018 J jnl
Simulations of blood as a suspension predicts a depth dependent hematocrit in the circulation throughout the cerebral cortex.
PLoS Comput. Biol.
Grant Hartung, Claudia Vesel, Ryan Morley, Ali Alaraj, John G. Sled, David Kleinfeld, Andreas A. Linninger
2017 J jnl
Depth-dependent flow and pressure characteristics in cortical microvascular networks.
PLoS Comput. Biol.
Franca Schmid, Philbert S. Tsai, David Kleinfeld, Patrick Jenny, Bruno Weber
2017 — conf
The Active Atlas: Combining 3D Anatomical Models with Texture Detectors.
MICCAI (1)
Yuncong Chen, Lauren McElvain, Alex Tolpygo, Daniel Ferrante, Harvey J. Karten, Partha P. Mitra, David Kleinfeld, Yoav Freund
2017 J jnl
The Active Atlas: Combining 3D Anatomical Models with Texture Detectors.
CoRR
Yuncong Chen, David Kleinfeld, Yoav Freund
2017 J jnl
The impact of vessel size, orientation and intravascular contribution on the neurovascular fingerprint of BOLD bSSFP fMRI.
NeuroImage
Mario Gilberto Báez-Yánez, Philipp Ehses, Christian C. Mirkes, Philbert S. Tsai, David Kleinfeld, Klaus Scheffler
2012 J jnl
Vectorization of optically sectioned brain microvasculature: Learning aids completion of vascular graphs by connecting gaps and deleting open-ended segments.
Medical Image Anal.
John P. Kaufhold, Philbert Tsai, Pablo Blinder, David Kleinfeld
2010 J jnl
Rapid determination of particle velocity from space-time images using the Radon transform.
J. Comput. Neurosci.
Patrick J. Drew, Pablo Blinder, Gert Cauwenberghs, Andy Y. Shih, David Kleinfeld
2009 J jnl
A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale.
PLoS Comput. Biol.
Jason W. Bohland, Caizhi Wu, Helen Barbas, Hemant Bokil, Mihail Bota, Hans C. Breiter, Hollis T. Cline, John C. Doyle, Peter J. Freed, Ralph J. Greenspan, Suzanne N. Haber, Michael Hawrylycz, Daniel G. Herrera, Claus C. Hilgetag, Z. Josh Huang, Allan Jones, Edward G. Jones, Harvey J. Karten, David Kleinfeld, Rolf Kötter, Henry A. Lester, John M. Lin, Brett D. Mensh, Shawn Mikula, Jaak Panksepp, Joseph L. Price, Joseph Safdieh, Clifford B. Saper, Nicholas D. Schiff, Jeremy D. Schmahmann, Bruce W. Stillman, Karel Svoboda, Larry W. Swanson, Arthur W. Toga, David C. Van Essen, James D. Watson, Partha P. Mitra
2008 — ch.
Computational Intelligence in Electrophysiology: Trends and Open Problems.
Applications of Computational Intelligence in Biology
Cengiz Günay, Tomasz G. Smolinski, William W. Lytton, Thomas M. Morse, Padraig Gleeson, Sharon M. Crook, Volker Steuber, Angus Silver, Horatiu Voicu, Peter Andrews, Hemant Bokil, Hiren Maniar, Catherine Loader, Samar Mehta, David Kleinfeld, David J. Thomson, Partha P. Mitra, Gloster Aaron, Jean-Marc Fellous
2004 — conf
Quantitative Analysis of Volumetric TPLSM Data.
ISBI
Agustin Ifarraguerri, Beverly Thompson, Philbert Tsai, Beth Friedman, Chris Schaffer, Varda Lev-Ram, Roger Tsien, David Kleinfeld, Jeff Squier