David James Sherman

18 papers A 3B 1Journal 14
YearRankTypeTitle / Venue / Authors
2015 J jnl
Mimoza: web-based semantic zooming and navigation in metabolic networks.
BMC Syst. Biol.
Anna Zhukova, David James Sherman
2015 J jnl
Pantograph: A template-based method for genome-scale metabolic model reconstruction.
J. Bioinform. Comput. Biol.
Nicolás Loira, Anna Zhukova, David James Sherman
2014 J jnl
Knowledge-based Generalization of Metabolic Models.
J. Comput. Biol.
Anna Zhukova, David James Sherman
2014 J jnl
Knowledge-based generalization of metabolic networks: A practical study.
J. Bioinform. Comput. Biol.
Anna Zhukova, David James Sherman
2012 J jnl
A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica.
BMC Syst. Biol.
Nicolás Loira, Thierry Dulermo, Jean-Marc Nicaud, David James Sherman
2009 J jnl
Family relationships: should consensus reign? - consensus clustering for protein families.
Bioinform.
Macha Nikolski, David James Sherman
2009 J jnl
Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes.
Nucleic Acids Res.
David James Sherman, Tiphaine C. Martin, Macha Nikolski, Cyril Cayla, Jean-Luc Souciet, Pascal Durrens
2009 J jnl
Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures.
J. Comput. Biol.
Géraldine Jean, David James Sherman, Macha Nikolski
2009 A conf
Swarming along the evolutionary branches sheds light on genome rearrangement scenarios.
GECCO
Nikolay Vyahhi, Adrien Goëffon, Macha Nikolski, David James Sherman
2008 A conf
An efficient probabilistic population-based descent for the median genome problem.
GECCO
Adrien Goëffon, Macha Nikolski, David James Sherman
2008 J jnl
Fusion and Fission of Genes Define a Metric between Fungal Genomes.
PLoS Comput. Biol.
Pascal Durrens, Macha Nikolski, David James Sherman
2007 J jnl
Family relationships: should consensus reign? - consensus clustering for protein families.
Bioinform.
Macha Nikolski, David James Sherman
2006 J jnl
Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts.
Nucleic Acids Res.
David James Sherman, Pascal Durrens, Florian Iragne, Emmanuelle Beyne, Macha Nikolski, Jean-Luc Souciet
2005 J jnl
ProViz: protein interaction visualization and exploration.
Bioinform.
Florian Iragne, Macha Nikolski, Bertrand Mathieu, David Auber, David James Sherman
2004 J jnl
Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts.
Nucleic Acids Res.
David James Sherman, Pascal Durrens, Emmanuelle Beyne, Macha Nikolski
2004 J jnl
IntAct: an open source molecular interaction database.
Nucleic Acids Res.
Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler
1998 B conf
Almana: A BDD Minimization Tool Integrating Heuristic and Rewriting Methods.
FMCAD
Macha Nikolskaïa, Antoine Rauzy, David James Sherman
1998 A conf
Factotum: Automatic and Systematic Sharing Support for Systems Analyzers.
TACAS
David James Sherman, Nicolas Magnier