David J. States

43 papers A* 1A 7B 2Journal 26Unranked 7
YearRankTypeTitle / Venue / Authors
2014 J jnl
CLO: The cell line ontology.
J. Biomed. Semant.
Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He
2012 J jnl
Metab2MeSH: annotating compounds with medical subject headings.
Bioinform.
Maureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn, Brian D. Athey, Alla Karnovsky
2010 J jnl
GLay: community structure analysis of biological networks.
Bioinform.
Gang Su, Allan Kuchinsky, John H. Morris, David J. States, Fan Meng
2010 J jnl
Understanding Distal transcriptional Regulation from Sequence, Expression and interactome Perspectives.
J. Bioinform. Comput. Biol.
Arvind Rao, David J. States, Alfred O. Hero III, James Douglas Engel
2009 J jnl
Integrating and annotating the interactome using the MiMI plugin for cytoscape.
Bioinform.
Jing Gao, Alexander S. Ade, V. Glenn Tarcea, Terry E. Weymouth, Barbara R. Mirel, H. V. Jagadish, David J. States
2009 J jnl
MiSearch adaptive pubMed search tool.
Bioinform.
David J. States, Alexander S. Ade, Zachary C. Wright, Aaron V. Bookvich, Brian D. Athey
2009 J jnl
Michigan molecular interactions r2: from interacting proteins to pathways.
Nucleic Acids Res.
V. Glenn Tarcea, Terry E. Weymouth, Alexander S. Ade, Aaron V. Bookvich, Jing Gao, Vasudeva Mahavisno, Zach Wright, Adriane Chapman, Magesh Jayapandian, Arzucan Özgür, Yuanyuan Tian, James D. Cavalcoli, Barbara Mirel, Jignesh M. Patel, Dragomir R. Radev, Brian D. Athey, David J. States, H. V. Jagadish
2009 J jnl
SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.
Bioinform.
Junguk Hur, Adam D. Schuyler, David J. States, Eva L. Feldman
2008 J jnl
A bioinformatics analysis of the cell line nomenclature.
Bioinform.
Sirarat Sarntivijai, Alexander S. Ade, Brian D. Athey, David J. States
2008 J jnl
Blind men and elephants: What do citation summaries tell us about a research article?
J. Assoc. Inf. Sci. Technol.
Aaron Elkiss, Siwei Shen, Anthony Fader, Günes Erkan, David J. States, Dragomir R. Radev
2008 J jnl
Cytoscape ESP: simple search of complex biological networks.
Bioinform.
Maital Ashkenazi, Gary D. Bader, Allan Kuchinsky, Menachem Moshelion, David J. States
2008 J jnl
Using Directed Information to Build Biologically Relevant Influence Networks.
J. Bioinform. Comput. Biol.
Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel
2007 J jnl
Inferring Time-Varying Network Topologies from Gene Expression Data.
EURASIP J. Bioinform. Syst. Biol.
Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel
2007 J jnl
Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-
PLoS Comput. Biol.
Yili Chen, Thomas W. Blackwell, Ji Chen, Jing Gao, Angel W. Lee, David J. States
2007 J jnl
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together.
Nucleic Acids Res.
Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip C. Andrews, Brian D. Athey, David J. States, H. V. Jagadish
2007 J jnl
Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information.
EURASIP J. Bioinform. Syst. Biol.
Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel
2007 J jnl
SAGA: a subgraph matching tool for biological graphs.
Bioinform.
Yuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel
2006 — conf
Inference of Biologically Relevant Gene Influence Networks Using the Directed Information Criterion.
ICASSP (2)
Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel
2006 — conf
Probabilistic data integration and visualization for understanding transcriptional regulation.
EUSIPCO
Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel
2005 — conf
ISMB 2005 Organization.
ISMB (Supplement of Bioinformatics)
H. V. Jagadish, David J. States, Burkhard Rost
2005 — conf
ISMB 2005.
ISMB (Supplement of Bioinformatics)
H. V. Jagadish, David J. States, Burkhard Rost
2005 J jnl
Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction.
Bioinform.
Carlos Santos, Daniela Eggle, David J. States
2001 J jnl
Conformational model for binding site recognition by the E.coli MetJ transcription factor.
Bioinform.
Rongxiang Liu, Thomas W. Blackwell, David J. States
2001 — conf
Probabilistic approaches to the use of higher order clone relationships in physical map assembly.
ISMB (Supplement of Bioinformatics)
David J. States, Volker Nowotny, Thomas W. Blackwell
2001 J jnl
Time to defend what we have won
Bioinform.
David J. States
2000 A conf
UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences.
ISMB
Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States
1999 A conf
Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions.
ISMB
Thomas W. Blackwell, Eric C. Rouchka, David J. States
1998 B conf
A structure based similarity measure for nucleic acid sequence comparison.
RECOMB
Rongxiang Liu, Thomas W. Blackwell, David J. States
1998 J jnl
Comparative accuracy of methods for protein sequence similarity search.
Bioinform.
Pankaj Agarwal, David J. States
1998 B conf
Estimation of allele frequencies from color-multiplexed electropherograms.
RECOMB
David G. Politte, David R. Maffitt, David J. States
1998 J jnl
Filter matrix estimation in automated DNA sequencing.
IEEE Trans. Biomed. Eng.
Weian Huang, Daniel R. Fuhrmann, David G. Politte, Lewis J. Thomas Jr., David J. States
1998 A conf
Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis.
ISMB
Eric C. Rouchka, David J. States
1996 J jnl
A Bayesian Evolutionary Distance for Parametrically Aligned Sequences.
J. Comput. Biol.
Pankaj Agarwal, David J. States
1996 A conf
Compact Encoding Strategies for DNA Sequence Similarity Search.
ISMB
David J. States, Pankaj Agarwal
1996 A ed.
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996
ISMB
David J. States, Pankaj Agarwal, Terry Gaasterland, Lawrence Hunter, Randall Smith
1994 — conf
Motifs in Biology: Analysis of Ambiguous Data: Introduction.
HICSS (5)
Toni Kazic, David J. States, Lloyd Allison
1994 J jnl
QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification.
J. Comput. Biol.
David J. States, Warren Gish
1994 A conf
The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome.
ISMB
Pankaj Agarwal, David J. States
1993 A conf
Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification.
ISMB
David J. States, Nomi L. Harris, Lawrence Hunter
1993 J jnl
Information Enhancement Methods for Large Scale Sequence Analysis.
Comput. Chem.
Jean-Michel Claverie, David J. States
1992 J jnl
Bayesian Classification of Protein Structure.
IEEE Expert
Lawrence Hunter, David J. States
1992 — conf
Efficient Classification of Massive, Unsegmented Datastreams.
ML
Lawrence Hunter, Nomi L. Harris, David J. States
1992 A* conf
Mega-Classification: Discovering Motifs in Massive Datastreams.
AAAI
Nomi L. Harris, Lawrence Hunter, David J. States