David J. Reiss

12 papers Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2015 J jnl
Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions.
BMC Syst. Biol.
Samuel A. Danziger, David J. Reiss, Alexander V. Ratushny, Jennifer J. Smith, Christopher L. Plaisier, John D. Aitchison, Nitin S. Baliga
2014 J jnl
Evolution of context dependent regulation by expansion of feast/famine regulatory proteins.
BMC Syst. Biol.
Christopher L. Plaisier, Fang-Yin Lo, Justin Ashworth, Aaron N. Brooks, Karlyn D. Beer, Amardeep Kaur, Min Pan, David J. Reiss, Marc T. Facciotti, Nitin S. Baliga
2014 J jnl
Network portal: a database for storage, analysis and visualization of biological networks.
Nucleic Acids Res.
Serdar Turkarslan, Elisabeth J. Wurtmann, Wei-Ju Wu, Ning Jiang, J. Christopher Bare, Karen Foley, David J. Reiss, Pavel S. Novichkov, Nitin S. Baliga
2010 J jnl
Integration and visualization of systems biology data in context of the genome.
BMC Bioinform.
J. Christopher Bare, Tie Koide, David J. Reiss, Dan Tenenbaum, Nitin S. Baliga
2010 J jnl
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis.
BMC Syst. Biol.
Marc T. Facciotti, Wyming Lee Pang, Fang-Yin Lo, Kenia Whitehead, Tie Koide, Ken-ichi Masumura, Min Pan, Amardeep Kaur, David J. Larsen, David J. Reiss, Linh Hoang, Ewa Kalisiak, Trent Northen, Sunia A. Trauger, Gary Siuzdak, Nitin S. Baliga
2010 J jnl
Learning transcriptional networks from the integration of ChIP-chip and expression data in a non-parametric model.
Bioinform.
Ahrim Youn, David J. Reiss, Werner Stuetzle
2008 J jnl
Model-based deconvolution of genome-wide DNA binding.
Bioinform.
David J. Reiss, Marc T. Facciotti, Nitin S. Baliga
2007 J jnl
BioNetBuilder: automatic integration of biological networks.
Bioinform.
Iliana Avila-Campillo, Kevin Drew, John Lin, David J. Reiss, Richard Bonneau
2006 J jnl
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks.
BMC Bioinform.
David J. Reiss, Nitin S. Baliga, Richard Bonneau
2006 J jnl
The Gaggle: An open-source software system for integrating bioinformatics software and data sources.
BMC Bioinform.
Paul T. Shannon, David J. Reiss, Richard Bonneau, Nitin S. Baliga
2005 J jnl
Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection.
BMC Bioinform.
David J. Reiss, Iliana Avila-Campillo, Vesteinn Thorsson, Benno Schwikowski, Timothy Galitski
2004 — conf
Predicting protein-peptide interactions via a network-based motif sampler.
ISMB/ECCB (Supplement of Bioinformatics)
David J. Reiss, Benno Schwikowski