David J. Foran

80 papers A* 3A 2B 5C 1Misc 2Journal 36Unranked 31

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A Study on the Performance of U-Net Modifications in Retroperitoneal Tumor Segmentation. CoRR Moein Heidari, Ehsan Khodapanah Aghdam, Alexander Manzella, Daniel Hsu, Rebecca Scalabrino, Wenjin Chen, David J. Foran, Ilker Hacihaliloglu
2025	J	`jnl`	AI-driven prediction of progression to oral squamous cell carcinoma using a multiresolution pathology model. npj Digit. Medicine Yingci Liu-Swetz, Sead Niksic, Raja R. Seethala, Alivia Shasteen, David J. Foran, Elizabeth A. Bilodeau
2024	—	`conf`	BioReX: Biomarker Information Extraction Inspired by Aspect-Based Sentiment Analysis. PKDD (4) Weiting Gao, Xiangyu Gao, Wenjin Chen, David J. Foran, Yi Chen
2024	J	`jnl`	Environment Scan of Generative AI Infrastructure for Clinical and Translational Science. CoRR Betina Idnay, Zihan Xu, William G. Adams, Mohammad Adibuzzaman, Nicholas R. Anderson, Neil Bahroos, Douglas S. Bell, Cody Bumgardner, Thomas R. Campion Jr., Victor M. Castro, James J. Cimino, I. Glenn Cohen, David A. Dorr, Peter L. Elkin, Jungwei W. Fan, Todd Ferris, David J. Foran, David A. Hanauer, Mike Hogarth, Kun Huang, Jayashree Kalpathy-Cramer, Manoj Kandpal, Niranjan S. Karnik, Avnish Katoch, Albert M. Lai, Christophe G. Lambert, Lang Li, Christopher J. Lindsell, Jinze Liu, Zhiyong Lu, Yuan Luo, Peter McGarvey, Eneida A. Mendonça, Parsa Mirhaji, Shawn N. Murphy, John D. Osborne, Ioannis Ch. Paschalidis, Paul A. Harris, Fred W. Prior, Nicholas J. Shaheen, Nawar Shara, Ida Sim, Umberto Tachinardi, Lemuel R. Waitman, Rosalind J. Wright, Adrian H. Zai, Kai Zheng, Sandra Soo-Jin Lee, Bradley A. Malin, Karthik Natarajan, W. Nicholson Price, Rui Zhang, Yiye Zhang, Hua Xu, Jiang Bian, Chunhua Weng, Yifan Peng
2023	J	`jnl`	Multi-Scale Feature Fusion using Parallel-Attention Block for COVID-19 Chest X-ray Diagnosis. CoRR Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
2022	—	`conf`	Multi-Feature Vision Transformer via Self-Supervised Representation Learning for Improvement of COVID-19 Diagnosis. MILLanD@MICCAI Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
2022	J	`jnl`	Multi-Feature Vision Transformer via Self-Supervised Representation Learning for Improvement of COVID-19 Diagnosis. CoRR Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
2021	J	`jnl`	Chest X-ray image phase features for improved diagnosis of COVID-19 using convolutional neural network. Int. J. Comput. Assist. Radiol. Surg. Xiao Qi, Lloyd G. Brown, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
2021	J	`jnl`	Liver disease classification from ultrasound using multi-scale CNN. Int. J. Comput. Assist. Radiol. Surg. Hui Che, Lloyd G. Brown, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
2021	—	`conf`	Multi-Feature Semi-Supervised Learning for COVID-19 Diagnosis from Chest X-Ray Images. MLMI@MICCAI Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu
2021	—	`conf`	Realistic Ultrasound Image Synthesis for Improved Classification of Liver Disease. ASMUS@MICCAI Hui Che, Sumana Ramanathan, David J. Foran, John L. Nosher, Vishal M. Patel, Ilker Hacihaliloglu
2021	J	`jnl`	Realistic Ultrasound Image Synthesis for Improved Classification of Liver Disease. CoRR Hui Che, Sumana Ramanathan, David J. Foran, John L. Nosher, Vishal M. Patel, Ilker Hacihaliloglu
2020	J	`jnl`	AI in Medical Imaging Informatics: Current Challenges and Future Directions. IEEE J. Biomed. Health Informatics Andreas S. Panayides, Amir A. Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair A. Young, David J. Foran, Nhan Do, Spyretta Golemati, Tahsin M. Kurç, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis E. Zervakis, Joel H. Saltz, Constantinos S. Pattichis
2020	—	`conf`	CBEx: A Hybrid Approach for Cancer Biomarker Extraction. BIBM Xiangyu Gao, Jinhe Shi, Wenjin Chen, Nancy Sazo, Huiqi Chu, Evita T. Sadimin, David J. Foran, Yi Chen
2020	J	`jnl`	Chest X-ray Image Phase Features for Improved Diagnosis of COVID-19 Using Convolutional Neural Network. CoRR Xiao Qi, Lloyd G. Brown, David J. Foran, Ilker Hacihaliloglu
2019	A*	`conf`	EIGEN: Ecologically-Inspired GENetic Approach for Neural Network Structure Searching From Scratch. CVPR Jian Ren, Zhe Li, Jianchao Yang, Ning Xu, Tianbao Yang, David J. Foran
2019	J	`jnl`	Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. Pattern Recognit. Le Hou, Vu Nguyen, Ariel B. Kanevsky, Dimitris Samaras, Tahsin M. Kurç, Tianhao Zhao, Rajarsi R. Gupta, Yi Gao, Wenjin Chen, David J. Foran, Joel H. Saltz
2018	—	`conf`	Adversarial Domain Adaptation for Classification of Prostate Histopathology Whole-Slide Images. MICCAI (2) Jian Ren, Ilker Hacihaliloglu, Eric A. Singer, David J. Foran, Xin Qi
2018	J	`jnl`	Adversarial Domain Adaptation for Classification of Prostate Histopathology Whole-Slide Images. CoRR Jian Ren, Ilker Hacihaliloglu, Eric A. Singer, David J. Foran, Xin Qi
2018	J	`jnl`	EIGEN: Ecologically-Inspired GENetic Approach for Neural Network Structure Searching. CoRR Jian Ren, Zhe Li, Jianchao Yang, Ning Xu, Tianbao Yang, David J. Foran
2018	J	`jnl`	Electromechanical Coupling Factor of Breast Tissue as a Biomarker for Breast Cancer. IEEE Trans. Biomed. Eng. Kihan Park, Wenjin Chen, Marina A. Chekmareva, David J. Foran, Jaydev P. Desai
2018	J	`jnl`	Factorized Adversarial Networks for Unsupervised Domain Adaptation. CoRR Jian Ren, Jianchao Yang, Ning Xu, David J. Foran
2017	B	`conf`	Computer aided analysis of prostate histopathology images to support a refined Gleason grading system. Image Processing Jian Ren, Evita T. Sadimin, David J. Foran, Xin Qi
2017	J	`jnl`	Parallel Versus Distributed Data Access for Gigapixel-Resolution Histology Images: Challenges and Opportunities. IEEE J. Biomed. Health Informatics Esma Yildirim, David J. Foran
2017	A*	`conf`	Personalized Image Aesthetics. ICCV Jian Ren, Xiaohui Shen, Zhe Lin, Radomír Mech, David J. Foran
2017	C	`conf`	Supporting Real-Time Jobs on the IBM Blue Gene/Q: Simulation-Based Study. JSSPP Daihou Wang, Eun-Sung Jung, Rajkumar Kettimuthu, Ian T. Foster, David J. Foran, Manish Parashar
2016	—	`conf`	A Support Vector Machine based Prediction Model for Discrimination of Malignant Pulmonary Nodules from Benign Nodules. BIOIMAGING Yan Wu, Emmanuel Zachariah, Judith Amorosa, Anjani Naidu, Mina L. Labib, Jamil Shaikh, Donna Eckstein, Sinae Kim, John E. Langenfeld, Joseph Aisner, John L. Nosher, Robert S. DiPaola, David J. Foran
2016	J	`jnl`	Toward a Portable Cancer Diagnostic Tool Using a Disposable MEMS-Based Biochip. IEEE Trans. Biomed. Eng. Hardik Jeetendra Pandya, Kihan Park, Wenjin Chen, Lauri A. Goodell, David J. Foran, Jaydev P. Desai
2015	—	`conf`	Computer aided analysis of prostate histopathology images Gleason grading especially for Gleason score 7. EMBC Jian Ren, Evita T. Sadimin, Daihou Wang, Jonathan I. Epstein, David J. Foran, Xin Qi
2015	—	`conf`	Exploring automatic prostate histopathology image gleason grading via local structure modeling. EMBC Daihou Wang, David J. Foran, Jian Ren, Hua Zhong, Isaac Y. Kim, Xin Qi
2015	—	`conf`	HetroCV: Auto-tuning Framework and Runtime for Image Processing and Computer Vision Applications on Heterogeneous Platform. ICPP Workshops Daihou Wang, David J. Foran, Xin Qi, Manish Parashar
2015	—	`conf`	Robust automatic breast cancer staging using a combination of functional genomics and image-omics. EMBC Hai Su, Yong Shen, Fuyong Xing, Xin Qi, Kim M. Hirshfield, Lin Yang, David J. Foran
2015	J	`jnl`	Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinform. Tahsin M. Kurç, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee Cooper, Michael Nalisnik, Lin Yang, Joel H. Saltz, David J. Foran
2014	—	`conf`	Collaborative marketplaces for eScience: A medical imaging use case. CTS Mengsong Zou, Javier Diaz Montes, Ivan Rodero, Manish Parashar, Ioan Petri, Omer F. Rana, Xin Qi, David J. Foran
2014	J	`jnl`	Content-based histopathology image retrieval using CometCloud. BMC Bioinform. Xin Qi, Daihou Wang, Ivan Rodero, Javier Diaz Montes, Rebekah H. Gensure, Fuyong Xing, Hua Zhong, Lauri A. Goodell, Manish Parashar, David J. Foran, Lin Yang
2014	J	`jnl`	Parallel content-based sub-image retrieval using hierarchical searching. Bioinform. Lin Yang, Xin Qi, Fuyong Xing, Tahsin M. Kurç, Joel H. Saltz, David J. Foran
2014	J	`jnl`	Probabilistic Estimation of Mechanical Properties of Biomaterials Using Atomic Force Microscopy. IEEE Trans. Biomed. Eng. Rajarshi Roy, Wenjin Chen, Lei Cong, Lauri A. Goodell, David J. Foran, Jaydev P. Desai
2013	J	`jnl`	A Semi-Automated Positioning System for Contact-Mode Atomic Force Microscopy (AFM). IEEE Trans Autom. Sci. Eng. Rajarshi Roy, Wenjin Chen, Lei Cong, Lauri A. Goodell, David J. Foran, Jaydev P. Desai
2013	—	`conf`	Content-based white blood cell retrieval on bright-field pathology images. Digital Pathology Xin Qi, Rebekah H. Gensure, David J. Foran, Lin Yang
2012	B	`conf`	Digitized tissue microarray classification using sparse reconstruction. Image Processing Fuyong Xing, Baiyang Liu, Xin Qi, David J. Foran, Lin Yang
2012	J	`jnl`	Ranked retrieval of segmented nuclei for objective assessment of cancer gene repositioning. BMC Bioinform. William J. Cukierski, Kaustav Nandy, Prabhakar R. Gudla, Karen J. Meaburn, Tom Misteli, David J. Foran, Stephen J. Lockett
2012	J	`jnl`	Robust Segmentation of Overlapping Cells in Histopathology Specimens Using Parallel Seed Detection and Repulsive Level Set. IEEE Trans. Biomed. Eng. Xin Qi, Fuyong Xing, David J. Foran, Lin Yang
2011	—	`conf`	Comparative performance analysis of stained histopathology specimens using RGB and multispectral imaging. Computer-Aided Diagnosis Xin Qi, Fuyong Xing, David J. Foran, Lin Yang
2011	—	`conf`	Dynamic online registration guided collaborative tracking of lung tumor movement in fluoroscopic videos. ISBI Baiyang Liu, Lin Yang, Casimir A. Kulikowski, Leiguang Gong, David J. Foran, Salma K. Jabbour, Ning J. Yue
2011	J	`jnl`	ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J. Am. Medical Informatics Assoc. David J. Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A. Goodell, Michael Reiss, Fusheng Wang, Tahsin M. Kurç, Tony Pan, Ashish Sharma, Joel H. Saltz
2010	—	`conf`	An adaptive tracking algorithm of lung tumors in fluoroscopy using online learned collaborative trackers. ISBI Baiyang Liu, Lin Yang, Casimir A. Kulikowski, Jinghao Zhou, Leiguang Gong, David J. Foran, Salma J. Jabbour, Ning J. Yue
2010	—	`conf`	High Performance Computing Techniques for Scaling Image Analysis Workflows. PARA (2) Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran
2010	—	`conf`	Metamerism in multispectral imaging of histopathology specimens. ISBI William J. Cukierski, David J. Foran
2009	—	`conf`	3D Segmentation of the Liver Using Free-Form Deformation Based on Boosting and Deformation Gradients. ISBI Hong Zhang, Lin Yang, David J. Foran, John L. Nosher, Peter J. Yim
2009	—	`conf`	A Parallel Point Matching Algorithm for Landmark Based Image Registration Using Multicore Platform. Euro-Par Lin Yang, Leiguang Gong, Hong Zhang, John L. Nosher, David J. Foran
2009	—	`conf`	A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens. ISBI David J. Foran, Lin Yang, Oncel Tuzel, Wenjin Chen, Jun Hu, Tahsin M. Kurç, Renato Ferreira, Joel H. Saltz
2009	J	`jnl`	A deformable model for tracking tumors across consecutive imaging studies. Int. J. Comput. Assist. Radiol. Surg. Gabriela Niculescu, John L. Nosher, M. D. Benjamin Schneider, David J. Foran
2009	—	`conf`	Investigating the use of autonomic cloudbursts for high-throughput medical image registration. GRID Hyunjoo Kim, Manish Parashar, David J. Foran, Lin Yang
2009	—	`conf`	Moving Beyond Color: the Case for Multispectral Imaging in Brightfield Pathology. ISBI William J. Cukierski, Xin Qi, David J. Foran
2009	J	`jnl`	PathMiner: A Web-Based Tool for Computer-Assisted Diagnostics in Pathology. IEEE Trans. Inf. Technol. Biomed. Lin Yang, Oncel Tuzel, Wenjin Chen, Peter Meer, Gratian Salaru, Lauri A. Goodell, David J. Foran
2009	J	`jnl`	Virtual Microscopy and Grid-Enabled Decision Support for Large-Scale Analysis of Imaged Pathology Specimens. IEEE Trans. Inf. Technol. Biomed. Lin Yang, Wenjin Chen, Peter Meer, Gratian Salaru, Lauri A. Goodell, Viktors Berstis, David J. Foran
2008	—	`conf`	A fast and accurate tracking algorithm of left ventricles in 3D echocardiography. ISBI Lin Yang, Bogdan Georgescu, Yefeng Zheng, David J. Foran, Dorin Comaniciu
2008	—	`conf`	Automatic Image Analysis of Histopathology Specimens Using Concave Vertex Graph. MICCAI (1) Lin Yang, Oncel Tuzel, Peter Meer, David J. Foran
2008	J	`jnl`	Computer-assisted assessment of the Human Epidermal Growth Factor Receptor 2 immunohistochemical assay in imaged histologic sections using a membrane isolation algorithm and quantitative analysis of positive controls. BMC Medical Imaging Bonnie Hall, Monica Ianosi-Irimie, Parisa Javidian, Wenjin Chen, Shridar Ganesan, David J. Foran
2008	—	`conf`	Using Betweenness Centrality to Identify Manifold Shortcuts. ICDM Workshops William J. Cukierski, David J. Foran
2007	—	`conf`	A Clinically Motivated 2-Fold Framework for Quantifying and Classifying Immunohistochemically Stained Specimens. MICCAI (2) Bonnie Hall, Wenjin Chen, Michael Reiss, David J. Foran
2007	—	`conf`	A Variational Framework for Partially Occluded Image Segmentation using Coarse to Fine Shape Alignment and Semi-Parametric Density Approximation. ICIP (1) Lin Yang, David J. Foran
2007	J	`jnl`	Classification of hematologic malignancies using texton signatures. Pattern Anal. Appl. Oncel Tuzel, Lin Yang, Peter Meer, David J. Foran
2007	—	`conf`	High Throughput Analysis of Breast Cancer Specimens on the Grid. MICCAI (1) Lin Yang, Wenjin Chen, Peter Meer, Gratian Salaru, Michael D. Feldman, David J. Foran
2007	A*	`conf`	Multiple Class Segmentation Using A Unified Framework over Mean-Shift Patches. CVPR Lin Yang, Peter Meer, David J. Foran
2005	J	`jnl`	Image mining for investigative pathology using optimized feature extraction and data fusion. Comput. Methods Programs Biomed. Wenjin Chen, Peter Meer, Bogdan Georgescu, Wei He, Lauri A. Goodell, David J. Foran
2005	J	`jnl`	Unsupervised segmentation based on robust estimation and color active contour models. IEEE Trans. Inf. Technol. Biomed. Lin Yang, Peter Meer, David J. Foran
2004	J	`jnl`	A Prototype for Unsupervised Analysis of Tissue Microarrays for Cancer Research and Diagnostics. IEEE Trans. Inf. Technol. Biomed. Wenjin Chen, Michael Reiss, David J. Foran
2004	—	`conf`	Engineering a Peer-to-Peer Collaboratory for Tissue Microarray Research. CLADE Cristina Schmidt, Manish Parashar, Wenjin Chen, David J. Foran
2003	B	`conf`	Volumetry of Hepatic Metastases in Computed Tomography Using the Watershed and Active Contour Algorithms. CBMS Peter J. Yim, David J. Foran
2002	Misc	`conf`	A Dynamic Imaging Database for 3-D Morphologic Analysis and Clinical Assessment in Diagnostic Radiology. AMIA Gabriela Niculescu, Louay Toni, David J. Foran, John L. Nosher, Kevin J. DeMarco
2002	Misc	`conf`	Unsupervised imaging, registration and archiving of tissue microarrays. AMIA Wenjin Chen, David J. Foran, Michael Reiss
2000	J	`jnl`	Computer-assisted discrimination among malignant lymphomas and leukemia using immunophenotyping, intelligent image repositories, and telemicroscopy. IEEE Trans. Inf. Technol. Biomed. David J. Foran, Dorin Comaniciu, Peter Meer, Lauri A. Goodell
1999	B	`conf`	Decision Support System for Multiuser Remote Microscopy in Telepathology. CBMS Dorin Comaniciu, Bogdan Georgescu, Peter Meer, Wenjin Chen, David J. Foran
1999	J	`jnl`	Image-guided decision support system for pathology. Mach. Vis. Appl. Dorin Comaniciu, Peter Meer, David J. Foran
1998	A	`conf`	Bimodal system for interactive indexing and retrieval of pathology images. WACV Dorin Comaniciu, Peter Meer, David J. Foran, Attila Medl
1998	A	`conf`	Bimodal system for interactive indexing and retrieval of pathology images. WACV Dorin Comaniciu, Peter Meer, David J. Foran, Attila Medl
1998	B	`conf`	Shape-based image indexing and retrieval for diagnostic pathology. ICPR Dorin Comaniciu, Peter Meer, David J. Foran
1997	J	`jnl`	Compression guidelines for diagnostic telepathology. IEEE Trans. Inf. Technol. Biomed. David J. Foran, Peter Meer, Thomas V. Papathomas, Ivan Marsic
1996	—	`conf`	Establishing perceptual criteria on image quality in diagnostic telepathology. ICIP (1) David J. Foran, Peter Meer, Thomas V. Papathomas, Ivan Marsic, Leiguang Gong, Casimir A. Kulikowski, R. L. Trelstad