David J. Arenillas

14 papers B 1Journal 13
YearRankTypeTitle / Venue / Authors
2023 J jnl
OnTarget:
Nucleic Acids Res.
Oriol Fornes, Tamar Vered Av-Shalom, Andrea J. Korecki, Rachelle A. Farkas, David J. Arenillas, Anthony Mathelier, Elizabeth M. Simpson, Wyeth W. Wasserman
2018 J jnl
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.
Nucleic Acids Res.
Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime Abraham Castro-Mondragón, Robin van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni, Ge Tan, Damir Baranasic, David J. Arenillas, Albin Sandelin, Klaas Vandepoele, Boris Lenhard, Benoît Ballester, Wyeth W. Wasserman, François Parcy, Anthony Mathelier
2018 J jnl
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.
Nucleic Acids Res.
Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime Abraham Castro-Mondragón, Robin van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni, Ge Tan, Damir Baranasic, David J. Arenillas, Albin Sandelin, Klaas Vandepoele, Boris Lenhard, Benoît Ballester, Wyeth W. Wasserman, François Parcy, Anthony Mathelier
2017 J jnl
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.
Nucleic Acids Res.
Marina Lizio, Jayson Harshbarger, Imad Abugessaisa, Shuei Noguchi, Atsushi Kondo, Jessica Severin, Chris Mungall, David J. Arenillas, Anthony Mathelier, Yulia A. Medvedeva, Andreas Lennartsson, Finn Drabløs, Jordan A. Ramilowski, Owen J. L. Rackham, Julian Gough, Robin Andersson, Albin Sandelin, Hans Ienasescu, Hiromasa Ono, Hidemasa Bono, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, Takeya Kasukawa, Hideya Kawaji
2016 J jnl
CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs.
Bioinform.
David J. Arenillas, Alistair R. R. Forrest, Hideya Kawaji, Timo Lassmann, Wyeth W. Wasserman, Anthony Mathelier
2016 J jnl
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles.
Nucleic Acids Res.
Anthony Mathelier, Oriol Fornes, David J. Arenillas, Chih-Yu Chen, Grégoire Denay, Jessica J. Y. Lee, Wenqiang Shi, Casper Shyr, Ge Tan, Rebecca Worsley-Hunt, Allen W. Zhang, François Parcy, Boris Lenhard, Albin Sandelin, Wyeth W. Wasserman
2014 J jnl
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.
Nucleic Acids Res.
Anthony Mathelier, Xiaobei Zhao, Allen W. Zhang, François Parcy, Rebecca Worsley-Hunt, David J. Arenillas, Sorana Buchman, Chih-Yu Chen, Alice Yi Chou, Hans Ienasescu, Jonathan S. Lim, Casper Shyr, Ge Tan, Michelle Zhou, Boris Lenhard, Albin Sandelin, Wyeth W. Wasserman
2011 J jnl
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.
BMC Bioinform.
Antony Le Béchec, Elodie Portales-Casamar, Guillaume Vetter, Michèle Moes, Pierre-Joachim Zindy, Anne Saumet, David J. Arenillas, Charles Theillet, Wyeth W. Wasserman, Charles-Henri Lecellier, Evelyne Friederich
2011 J jnl
Validation of Skeletal Muscle
PLoS Comput. Biol.
Andrew T. Kwon, Alice Yi Chou, David J. Arenillas, Wyeth W. Wasserman
2010 J jnl
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.
Nucleic Acids Res.
Elodie Portales-Casamar, Supat Thongjuea, Andrew T. Kwon, David J. Arenillas, Xiaobei Zhao, Eivind Valen, Dimas Yusuf, Boris Lenhard, Wyeth W. Wasserman, Albin Sandelin
2009 J jnl
The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences.
Nucleic Acids Res.
Elodie Portales-Casamar, David J. Arenillas, Jonathan S. Lim, Magdalena I. Swanson, Steven Jiang, Anthony McCallum, Stefan Kirov, Wyeth W. Wasserman
2008 J jnl
In Silico Detection of Sequence Variations Modifying Transcriptional Regulation.
PLoS Comput. Biol.
Malin C. Andersen, Pär G. Engström, Stuart Lithwick, David J. Arenillas, Per Eriksson, Boris Lenhard, Wyeth W. Wasserman, Jacob Odeberg
2007 J jnl
oPOSSUM: integrated tools for analysis of regulatory motif over-representation.
Nucleic Acids Res.
Shannan J. Ho Sui, Debra L. Fulton, David J. Arenillas, Andrew T. Kwon, Wyeth W. Wasserman
2006 B conf
Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes.
APBC
Shao-Shan Huang, Debra L. Fulton, David J. Arenillas, Paul Perco, Shannan J. Ho Sui, James R. Mortimer, Wyeth W. Wasserman