David Gomez-Cabrero

24 papers A* 2A 1Journal 21
YearRankTypeTitle / Venue / Authors
2025 J jnl
GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysis.
BMC Bioinform.
Asier Ortega-Legarreta, Alberto Maillo, Daniel Mouzo, Ana Rosa López-Pérez, Lara Kular, Majid Pahlevan Kakhki, Maja Jagodic, Jesper Tegnér, Vincenzo Lagani, Ewoud Ewing, David Gomez-Cabrero
2025 A* conf
Interpretable Causal Representation Learning for Biological Data in the Pathway Space.
ICLR
Jesus de la Fuente Cedeño, Robert Lehmann, Carlos Ruiz-Arenas, Jan Voges, Irene Marín-Goñi, Xabier Martinez de Morentin, David Gomez-Cabrero, Idoia Ochoa, Jesper Tegnér, Vincenzo Lagani, Mikel Hernaez
2025 J jnl
Interpretable Causal Representation Learning for Biological Data in the Pathway Space.
CoRR
Jesus de la Fuente, Robert Lehmann, Carlos Ruiz-Arenas, Jan Voges, Irene Marín-Goñi, Xabier Martinez de Morentin, David Gomez-Cabrero, Idoia Ochoa, Jesper Tegnér, Vincenzo Lagani, Mikel Hernaez
2024 J jnl
ClustAll: An R package for patient stratification in complex diseases.
PLoS Comput. Biol.
Asier Ortega-Legarreta, Sara Palomino-Echeverria, Estefania Huergo, Vincenzo Lagani, Narsis A. Kiani, Pierre-Emmanuel Rautou, Nuria Planell-Picola, Jesper Tegnér, David Gomez-Cabrero
2023 A conf
A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model.
INTERSPEECH
Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Narsis A. Kiani, David Gomez-Cabrero, Jesper N. Tegnér
2023 J jnl
A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model.
CoRR
Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Narsis Aftab Kiani, David Gomez-Cabrero, Jesper N. Tegnér
2023 J jnl
LIBRA: an adaptative integrative tool for paired single-cell multi-omics data.
Quant. Biol.
Xabier Martinez de Morentin, Sumeer Ahmad Khan, Robert Lehmann, Sally Sisi Qu, Alberto Maillo, Narsis A. Kiani, Felipe Prósper, Jesper Tegnér, David Gomez-Cabrero
2023 J jnl
Reusability report: Learning the transcriptional grammar in single-cell RNA-sequencing data using transformers.
Nat. Mac. Intell.
Sumeer Ahmad Khan, Alberto Maillo, Vincenzo Lagani, Robert Lehmann, Narsis A. Kiani, David Gomez-Cabrero, Jesper Tegnér
2023 A* conf
Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition.
EMNLP
Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Rohit Kumar, Narsis A. Kiani, David Gomez-Cabrero, Jesper Tegnér
2023 J jnl
Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition.
CoRR
Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Rohit Kumar, Narsis A. Kiani, David Gomez-Cabrero, Jesper N. Tegnér
2020 J jnl
GeneSetCluster: a tool for summarizing and integrating gene-set analysis results.
BMC Bioinform.
Ewoud Ewing, Nuria Planell-Picola, Maja Jagodic, David Gomez-Cabrero
2019 J jnl
Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.
PLoS Comput. Biol.
Camden Jansen, Ricardo N. Ramirez, Nicole C. El-Ali, David Gomez-Cabrero, Jesper Tegnér, Matthias Merkenschlager, Ana Conesa, Ali Mortazavi
2018 J jnl
Controllability, Multiplexing, and Transfer Learning in Networks using Evolutionary Learning.
CoRR
Rise Ooi, Chao-Han Huck Yang, Pin-Yu Chen, Víctor M. Eguíluz, Narsis Aftab Kiani, Hector Zenil, David Gomez-Cabrero, Jesper Tegnér
2017 J jnl
Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies.
BMC Bioinform.
Maria Needhamsen, Ewoud Ewing, Harald Lund, David Gomez-Cabrero, Robert Adam Harris, Lara Kular, Maja Jagodic
2016 J jnl
A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions.
BMC Bioinform.
Vincenzo Lagani, Argyro D. Karozou, David Gomez-Cabrero, Gilad Silberberg, Ioannis Tsamardinos
2016 J jnl
ChainRank, a chain prioritisation method for contextualisation of biological networks.
BMC Bioinform.
Ákos Tényi, Pedro de Atauri, David Gomez-Cabrero, Isaac Cano, Kim Clarke, Francesco Falciani, Marta Cascante, Josep Roca, Dieter Maier
2016 J jnl
Erratum to: A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions.
BMC Bioinform.
Vincenzo Lagani, Argyro D. Karozou, David Gomez-Cabrero, Gilad Silberberg, Ioannis Tsamardinos
2016 J jnl
From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration.
BMC Bioinform.
David Gomez-Cabrero, Jörg Menche, Claudia Vargas, Isaac Cano, Dieter Maier, Albert-László Barabási, Jesper Tegnér, Josep Roca
2016 J jnl
Public data and open source tools for multi-assay genomic investigation of disease.
Briefings Bioinform.
Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron
2015 J jnl
Assessing the consistency of public human tissue RNA-seq data sets.
Briefings Bioinform.
Frida Danielsson, Tojo James, David Gomez-Cabrero, Mikael Huss
2014 J jnl
Data integration in the era of omics: current and future challenges.
BMC Syst. Biol.
David Gomez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam-Rudloff, Ana Conesa, Jesper Tegnér
2014 J jnl
STATegra EMS: an Experiment Management System for complex next-generation omics experiments.
BMC Syst. Biol.
Rafael Hernández-de-Diego, Noemi Boix-Chova, David Gomez-Cabrero, Jesper Tegnér, Imad Abugessaisa, Ana Conesa
2013 J jnl
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Bioinform.
Andrew E. Teschendorff, Francesco Marabita, Matthias Lechner, Thomas E. Bartlett, Jesper Tegnér, David Gomez-Cabrero, Stephan Beck
2011 J jnl
ParkDB: a Parkinson's disease gene expression database.
Database J. Biol. Databases Curation
Cristian Taccioli, Vincenza Maselli, Jesper Tegnér, David Gomez-Cabrero, Gioia Altobelli, Warren Emmett, Francesco Lescai, Stefano Gustincich, Elia Stupka