David Gfeller

12 papers Misc 1Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
SuperSpot: coarse graining spatial transcriptomics data into metaspots.
Bioinform.
Matei Teleman, Aurélie A. G. Gabriel, Léonard Hérault, David Gfeller
2023 J jnl
The MHC Motif Atlas: a database of MHC binding specificities and ligands.
Nucleic Acids Res.
Daniel M. Tadros, Simon Eggenschwiler, Julien Racle, David Gfeller
2022 J jnl
Metacells untangle large and complex single-cell transcriptome networks.
BMC Bioinform.
Mariia Bilous, Loc Tran, Chiara Cianciaruso, Aurélie A. G. Gabriel, Hugo Michel, Santiago J. Carmona, Mikael J. Pittet, David Gfeller
2019 Misc conf
Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival.
PSB
Rachel M. Pyke, Raphael Genolet, Alexandre Harari, George Coukos, David Gfeller, Hannah Carter
2018 J jnl
Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins.
PLoS Comput. Biol.
Linda Dib, Nicolas Salamin, David Gfeller
2017 J jnl
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.
PLoS Comput. Biol.
Michal Bassani-Sternberg, Chloé Chong, Philippe Guillaume, Marthe Solleder, HuiSong Pak, Philippe O. Gannon, Lana E. Kandalaft, George Coukos, David Gfeller
2015 J jnl
Protein homology reveals new targets for bioactive small molecules.
Bioinform.
David Gfeller, Vincent Zoete
2014 J jnl
SwissTargetPrediction: a web server for target prediction of bioactive small molecules.
Nucleic Acids Res.
David Gfeller, Aurélien Grosdidier, Matthias Wirth, Antoine Daina, Olivier Michielin, Vincent Zoete
2013 J jnl
Shaping the interaction landscape of bioactive molecules.
Bioinform.
David Gfeller, Olivier Michielin, Vincent Zoete
2013 J jnl
SwissSidechain: a molecular and structural database of non-natural sidechains.
Nucleic Acids Res.
David Gfeller, Olivier Michielin, Vincent Zoete
2012 J jnl
Beyond the Binding Site: The Role of the β2 - β3 Loop and Extra-Domain Structures in PDZ Domains.
PLoS Comput. Biol.
Stefano Mostarda, David Gfeller, Francesco Rao
2012 J jnl
Expanding molecular modeling and design tools to non-natural sidechains.
J. Comput. Chem.
David Gfeller, Olivier Michielin, Vincent Zoete