David Gavaghan

37 papers A* 1B 2C 2Journal 16Unranked 16

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Filter inference: A scalable nonlinear mixed effects inference approach for snapshot time series data. PLoS Comput. Biol. David Augustin, Ben Lambert, Ken Wang, Antje-Christine Walz, Martin Robinson, David Gavaghan
2021	J	`jnl`	Barely sufficient practices in scientific computing. Patterns Graham Lee, Sebastian Bacon, Ian Bush, Laura Fortunato, David Gavaghan, Thibault Lestang, Caroline Morton, Martin Robinson, Philippe Rocca-Serra, Susanna-Assunta Sansone, Helena Webb
2020	J	`jnl`	Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan
2020	J	`jnl`	Model Evidence with Fast Tree Based Quadrature. CoRR Thomas Foster, Chon Lok Lei, Martin Robinson, David Gavaghan, Ben Lambert
2016	—	`conf`	Hierarchical Bayesian Modelling of Variability and Uncertainty in Synthetic Action Potential Traces. CinC Ross H. Johnstone, Rémi Bardenet, David Gavaghan, Liudmila Polonchuk, Mark Davies, Gary R. Mirams
2015	J	`jnl`	Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane
2014	C	`conf`	Model Composition for Biological Mathematical Systems. MODELSWARD Mandeep Gill, Steve McKeever, David Gavaghan
2014	J	`jnl`	Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane
2013	J	`jnl`	A local sensitivity analysis method for developing biological models with identifiable parameters: Application to cardiac ionic channel modelling. Future Gener. Comput. Syst. Anna Sher, Ken Wang, Andrew J. Wathen, Philip John Maybank, Gary R. Mirams, David Abramson, Denis Noble, David Gavaghan
2013	J	`jnl`	Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan
2012	J	`jnl`	A Bidomain Model of the Ventricular Specialized Conduction System of the Heart. SIAM J. Appl. Math. Rafel Bordas, Kathryn Gillow, David Gavaghan, Blanca Rodríguez, David Kay
2012	J	`jnl`	A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath. PLoS Comput. Biol. Sara-Jane Dunn, Paul L. Appleton, Scott A. Nelson, Inke S. Näthke, David Gavaghan, James M. Osborne
2012	J	`jnl`	Contrast-Independent Curvilinear Structure Detection in Biomedical Images. IEEE Trans. Image Process. Boguslaw Obara, Mark D. Fricker, David Gavaghan, Vicente Grau
2012	—	`conf`	Modular mathematical modelling of biological systems. SpringSim (TMS-DEVS) Mandeep Gill, Steve McKeever, David Gavaghan
2012	C	`conf`	Modules for Reusable and Collaborative Modelling of Biological Mathematical Systems. WETICE Mandeep Gill, Steve McKeever, David Gavaghan
2012	—	`conf`	Pulmonary lobe segmentation from CT images using fissureness, airways, vessels and multilevel B-splines. ISBI Tom Doel, Tahreema N. Matin, Fergus Gleeson, David Gavaghan, Vicente Grau
2012	—	`conf`	Resolving the Three-Dimensional Histology of the Heart. CMSB Matthew Gibb, Rebecca Burton, Christian Bollensdorff, Carlos Afonso, Tahier Mansoori, Ulrich Schotten, David Gavaghan, Blanca Rodríguez, Jürgen E. Schneider, Peter Kohl, Vicente Grau
2011	—	`conf`	Regionally Optimised Mathematical Models of Cardiac Myocyte Orientation in Rat Hearts. FIMH Ilyas E. Karadag, Martin J. Bishop, Patrick Hales, Jürgen E. Schneider, Peter Kohl, David Gavaghan, Vicente Grau
2010	—	`conf`	A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to L-type Calcium Channel Modelling. eScience Anna Sher, Ken Wang, Andrew J. Wathen, Gary R. Mirams, David Abramson, David Gavaghan
2010	—	`conf`	Electrochemical Parameter Optimization Using Scientific Workflows. eScience Colin Enticott, Thomas C. Peachey, David Abramson, Elena Mashkina, Chong-Yong Lee, Alan Bond, Gareth Kennedy, David Gavaghan, Darrell Elton
2010	—	`conf`	On the Secure Sharing and Aggregation of Data to Support Systems Biology Research. DILS Andrew Simpson, Mark Slaymaker, David Gavaghan
2009	J	`jnl`	Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan
2009	—	`conf`	Comparison of Rule-Based and DTMRI-Derived Fibre Architecture in a Whole Rat Ventricular Computational Model. FIMH Martin J. Bishop, Patrick Hales, Gernot Plank, David Gavaghan, Jürgen E. Schneider, Vicente Grau
2008	—	`conf`	High Performance Computer Simulations of Cardiac Electrical Function Based on High Resolution MRI Datasets. ICCS (1) Michal Plotkowiak, Blanca Rodríguez, Gernot Plank, Jürgen E. Schneider, David Gavaghan, Peter Kohl, Vicente Grau
2008	—	`conf`	Incorporating Local Ca2 ICCS (1) Anna Sher, David Abramson, Colin Enticott, Slavisa Garic, David Gavaghan, Denis Noble, Penelope Noble, Tom Peachey
2008	J	`jnl`	Predicting Tumor Location by Modeling the Deformation of the Breast. IEEE Trans. Biomed. Eng. Pras Pathmanathan, David Gavaghan, Jonathan P. Whiteley, S. Jonathan Chapman, J. Michael Brady
2007	—	`conf`	An Iterative Method for Registration of High-Resolution Cardiac Histoanatomical and Mri Images. ISBI Tahier Mansoori, Gernot Plank, Rebecca Burton, Jürgen E. Schneider, Peter Kohl, David Gavaghan, Vicente Grau
2007	J	`jnl`	Integrative Biology - the challenges of developing a collaborative research environment for heart and cancer modelling. Future Gener. Comput. Syst. Sharon Lloyd, David Gavaghan, Andrew Simpson, Matthew Mascord, Clint Seneurine, Geoff Williams, Joe Pitt-Francis, David R. S. Boyd, Damian Mac Randal, Lakshmi Sastry
2006	B	`conf`	A Prototype Infrastructure for the Secure Aggregation of Imaging and Pathology Data for Colorectal Cancer Care. CBMS Mark Slaymaker, Andrew Simpson, Michael Brady, David Gavaghan, Fiona Reddington, Phil Quirke
2006	—	`conf`	Vulnerability to electric shocks in the regionally-ischemic ventricles. EMBC Blanca Rodríguez, Brock Tice, Robert Blake, David Gavaghan, Natalia A. Trayanova
2005	B	`conf`	Challenges of Ultra Large Scale Integration of Biomedical Computing Systems. CBMS Richard H. J. Begent, J. Michael Brady, Anthony Finkelstein, David Gavaghan, Peter Kerr, Helen Parkinson, Fiona Reddington, J. Max Wilkinson
2005	J	`jnl`	Oxygen transport to muscle tissue where regions of low oxygen tension exist. Math. Comput. Model. Jonathan P. Whiteley, David Gavaghan, Clive E. W. Hahn
2004	—	`conf`	Predicting Tumour Location by Simulating Large Deformations of the Breast Using a 3D Finite Element Model and Nonlinear Elasticity. MICCAI (2) Pras Pathmanathan, David Gavaghan, Jonathan P. Whiteley, Michael Brady, Martyn P. Nash, Poul M. F. Nielsen, Vijay Rajagopal
2002	—	`conf`	Climateprediction.net: Design Principles for Publicresource Modeling Research. IASTED PDCS Dave Stainforth, Jamie Kettleborough, Andrew P. Martin, Andrew Simpson, R. Gillis, A. Akkas, R. Gault, Mat Collins, David Gavaghan, Myles Allen
2002	J	`jnl`	The Dynamics and Pinning of a Spike for a Reaction-Diffusion System. SIAM J. Appl. Math. Darragh McInerney, David Gavaghan, Michael Jeffrey Ward, Paul Houston, Philip K. Maini
2002	—	`conf`	XML for Visualization. EuroWeb Ken W. Brodlie, Jason D. Wood, David A. Duce, Julian R. Gallop, David Gavaghan, Michael B. Giles, S. Hague, Jeremy Walton, M. Rudgyard, Brian Collins, J. Ibbotson, Alan Knox
2000	A*	`conf`	Discovering the Structure of Partial Differential Equations from Example Behaviour. ICML Ljupco Todorovski, Saso Dzeroski, Ashwin Srinivasan, Jonathan P. Whiteley, David Gavaghan