David E. Breen

96 papers A* 4A 8B 9C 2Misc 2Journal 36Unranked 30

Year	Rank	Type	Title / Venue / Authors
2025	B	`conf`	From Analog Records to Computational Research Data: Building the AI-Ready Lab Notebook. IEEE Big Data Joel Pepper, Zach Siapano, Jacob Furst, Fernando J. Uribe-Romo, David E. Breen, Jane Greenberg
2024	B	`conf`	AI-Ready Data: Knowledge Extraction from Archival Lab Notebooks. IEEE Big Data Joel Pepper, Elizabeth Jones, Xintong Zhao, Jacob Furst, Kyle Langlois, Fernando J. Uribe-Romo, David E. Breen, Jane Greenberg
2024	—	`conf`	An Epithelium-Inspired Deformation Modeling Framework for 4D Sheets. ISVC (1) Joel Pepper, David E. Breen
2024	J	`jnl`	Computational metadata generation methods for biological specimen image collections. Int. J. Digit. Libr. Kevin Karnani, Joel Pepper, Yasin Bakis, Xiaojun Wang, Henry L. Bart Jr., David E. Breen, Jane Greenberg
2024	A	`conf`	RIMeshGNN: A Rotation-Invariant Graph Neural Network for Mesh Classification. WACV Bahareh Shakibajahromi, Edward Kim, David E. Breen
2024	J	`jnl`	Special issue editorial: Computational modeling, design and fabrication for textiles. Comput. Aided Des. David E. Breen, James McCann
2023	J	`jnl`	A Multi-Agent Approach to Binary Classification Using Swarm Intelligence. Future Internet Sean Grimes, David E. Breen
2023	B	`conf`	Specimen Outlining: A Computational Archival Science Approach. IEEE Big Data David E. Breen, Andrew Senin, Ajani Levere, Joel Pepper, Jane Greenberg
2022	B	`conf`	Metadata Verification: A Workflow for Computational Archival Science. IEEE Big Data Joel Pepper, Andrew Senin, Dom Jebbia, David E. Breen, Jane Greenberg
2021	—	`conf`	An agent-based approach to predicting lymph node metastasis status in breast cancer. BIBM Sean Grimes, Mark D. Zarella, Fernando U. Garcia, David E. Breen
2021	—	`conf`	Automated Classification Map Generation of Prostate Cancer using Deep Learning. BIBM Wenhan Tan, David E. Breen, Fernando U. Garcia, Mark D. Zarella
2021	—	`conf`	Automatic Metadata Generation for Fish Specimen Image Collections. JCDL Joel Pepper, Jane Greenberg, Yasin Bakis, Xiaojun Wang, Henry L. Bart Jr., David E. Breen
2021	J	`jnl`	Geometric modeling of complex knitting stitches using a bicontinuous surface and its offsets. Comput. Aided Geom. Des. Paras Wadekar, Chelsea Amanatides, Levi Kapllani, Geneviève Dion, Randall D. Kamien, David E. Breen
2021	J	`jnl`	TopoKnit : A Process-Oriented Representation for Modeling the Topology of Yarns in Weft-Knitted Textiles. CoRR Levi Kapllani, Chelsea Amanatides, Geneviève Dion, Vadim Shapiro, David E. Breen
2021	J	`jnl`	TopoKnit: A Process-Oriented Representation for Modeling the Topology of Yarns in Weft-Knitted Textiles. Graph. Model. Levi Kapllani, Chelsea Amanatides, Geneviève Dion, Vadim Shapiro, David E. Breen
2020	J	`jnl`	An optimized yarn-level geometric model for Finite Element Analysis of weft-knitted fabrics. Comput. Aided Geom. Des. Paras Wadekar, Vignesh Perumal, Geneviève Dion, Antonios Kontsos, David E. Breen
2020	J	`jnl`	Ortus: an Emotion-Driven Approach to (artificial) Biological Intelligence. CoRR Andrew W. E. McDonald, Sean Grimes, David E. Breen
2019	B	`conf`	Algorithmic Quilting Pattern Generation for Pieced Quilts. Graphics Interface Yifei Li, David E. Breen, James McCann, Jessica K. Hodgins
2019	J	`jnl`	Cell-level 3D reconstruction and quantification of the Drosophila wing imaginal disc. Int. J. Bioinform. Res. Appl. David E. Breen, Liyuan Sui, Linge Bai, Frank Jülicher, Christian Dahmann
2019	J	`jnl`	Directing chemotaxis-based spatial self-organisation via biased, random initial conditions. Int. J. Parallel Emergent Distributed Syst. Sean Grimes, Linge Bai, Andrew W. E. McDonald, David E. Breen
2019	A*	`conf`	Geodesy: Self-rising 2.5D Tiles by Printing along 2D Geodesic Closed Path. CHI Jianzhe Gu, David E. Breen, Jenny Hu, Lifeng Zhu, Ye Tao, Tyson Van de Zande, Guanyun Wang, Yongjie Jessica Zhang, Lining Yao
2018	J	`jnl`	Directing Chemotaxis-Based Spatial Self-Organization via Biased, Random Initial Conditions. CoRR Sean Grimes, Linge Bai, Andrew W. E. McDonald, David E. Breen
2018	—	`conf`	Image processing to extend effective OCT penetration depth in tissue. Digital Pathology Gautham Nandakumar, Shantel Maharaj, David E. Breen, Fernando U. Garcia, Mark D. Zarella
2017	—	`conf`	A Template Matching Model for Nuclear Segmentation in Digital Images of H&E Stained Slides. ICBBT Mark D. Zarella, Fernando U. Garcia, David E. Breen
2017	J	`jnl`	Detail-preserving level set surface editing and geometric texture transfer. Graph. Model. Manolya Eyiyurekli, David E. Breen
2017	—	`conf`	Ortus: An emotion-driven approach to (artificial) biological intelligence. ECAL Andrew W. E. McDonald, Sean Grimes, David E. Breen
2013	Misc	`conf`	3D surface reconstruction and visualization of the Drosophila wing imaginal disc at cellular resolution. Visualization and Data Analysis Linge Bai, Thomas Widmann, Frank Jülicher, Christian Dahmann, David E. Breen
2013	J	`jnl`	Self-organized sorting of heterotypic agents via a chemotaxis paradigm. Sci. Comput. Program. Linge Bai, Manolya Eyiyurekli, Peter I. Lelkes, David E. Breen
2012	—	`ch.`	Chemotaxis-Inspired Cellular Primitives for Self-Organizing Shape Formation. Morphogenetic Engineering, Toward Programmable Complex Systems Linge Bai, David E. Breen
2012	—	`conf`	Epithelial cell reconstruction and visualization of the developing Drosophila wing imaginal disc. BioVis David E. Breen, Thomas Widmann, Linge Bai, Frank Jülicher, Christian Dahmann
2012	J	`jnl`	OMAN: A Mobile Ad Hoc Network Design System. IEEE Trans. Mob. Comput. Alex Fridman, Steven Weber, Charles Graff, David E. Breen, Kapil R. Dandekar, Moshe Kam
2012	—	`conf`	Video Analysis Algorithms for Automated Categorization of Fly Behaviors. ISVC (2) Md. Alimoor Reza, Jeffrey Marker, Siddhita Mhatre, Aleister Saunders, Daniel Marenda, David E. Breen
2011	B	`conf`	Data structures for interactive high resolution level-set surface editing. Graphics Interface Manolya Eyiyurekli, David E. Breen
2011	—	`conf`	Image-based histologic grade estimation using stochastic geometry analysis. Computer-Aided Diagnosis Sokol Petushi, Jasper Zhang, Aladin Milutinovic, David E. Breen, Fernando U. Garcia
2010	Misc	`conf`	Chemotaxis-based sorting of self-organizing heterotypic agents. SAC Manolya Eyiyurekli, Linge Bai, Peter I. Lelkes, David E. Breen
2010	J	`jnl`	Interactive free-form level-set surface-editing operators. Comput. Graph. Manolya Eyiyurekli, David E. Breen
2009	—	`conf`	Editing Level-Set Models with Sketched Curves. SBIM Manolya Eyiyurekli, Cindy Grimm, David E. Breen
2008	C	`conf`	A Simplification Algorithm for Visualizing the Structure of Complex Graphs. IV Daniel Hennessey, Daniel Brooks, Alex Fridman, David E. Breen
2008	J	`jnl`	A computational model of chemotaxis-based cell aggregation. Biosyst. Manolya Eyiyurekli, Prakash Manley, Peter I. Lelkes, David E. Breen
2008	—	`conf`	An Emergent System for Self-Aligning and Self-Organizing Shape Primitives. SASO Linge Bai, Manolya Eyiyurekli, David E. Breen
2008	A	`conf`	Automated shape composition based on cell biology and distributed genetic programming. GECCO Linge Bai, Manolya Eyiyurekli, David E. Breen
2008	J	`jnl`	Calculating Center of Mass in an Unbounded 2D Environment. J. Graph. Tools Linge Bai, David E. Breen
2008	—	`conf`	Self-organizing primitives for automated shape composition. Shape Modeling International Linge Bai, Manolya Eyiyurekli, David E. Breen
2008	—	`conf`	Self-organizing primitives for shape composition based on chemotaxis and genetic programming. SIGGRAPH Talks David E. Breen, Linge Bai, Manolya Eyiyurekli
2008	—	`conf`	Temporal Computational Objects: A Process for Dynamic Surface Generation. ISVC (2) Kurt W. Swanson, Kenneth A. Brakke, David E. Breen
2007	—	`conf`	A Computational System for Investigating Chemotaxis-Based Cell Aggregation. ECAL Manolya Eyiyurekli, Peter I. Lelkes, David E. Breen
2007	J	`jnl`	Contour-based surface reconstruction using MPU implicit models. Graph. Model. Ilya Braude, Jeffrey Marker, Ken Museth, Jonathan Nissanov, David E. Breen
2007	—	`conf`	Visualization of Resource Allocation in Large-Scale Mobile Ad Hoc Networks. ISVC (1) Alex Fridman, Daniel Hennessey, David E. Breen, Steven Weber, Moshe Kam
2006	—	`conf`	Contour-Based Surface Reconstruction using Implicit Curve Fitting, and Distance Field Filtering and Interpolation. VG@SIGGRAPH Jeffrey Marker, Ilya Braude, Ken Museth, David E. Breen
2005	J	`jnl`	Algorithms for Interactive Editing of Level Set Models. Comput. Graph. Forum Ken Museth, David E. Breen, Ross T. Whitaker, Sean Mauch, David Johnson
2005	A	`conf`	Level Set and PDE Methods for Visualization. IEEE Visualization David E. Breen, Mike Kirby, Aaron E. Lefohn, Ken Museth, Tobias Preusser, Guillermo Sapiro, Ross T. Whitaker
2005	—	`conf`	Stochastic Microgeometry for Displacement Mapping. SMI Craig A. Schroeder, David E. Breen, Christopher D. Cera, William C. Regli
2005	A	`conf`	Surface Reconstruction Via Contour Metamorphosis: An Eulerian Approach With Lagrangian Particle Tracking. IEEE Visualization Ola Nilsson, David E. Breen, Ken Museth
2004	—	`conf`	Level set and PDE methods for computer graphics. SIGGRAPH Course Notes David E. Breen, Ron Fedkiw, Ken Museth, Stanley J. Osher, Guillermo Sapiro, Ross T. Whitaker
2003	J	`jnl`	Level set modeling and segmentation of diffusion tensor magnetic resonance imaging brain data. J. Electronic Imaging Leonid Zhukov, Ken Museth, David E. Breen, Alan H. Barr, Ross T. Whitaker
2003	—	`ed.`	Proceedings of the 2003 ACM SIGGRAPH/Eurographics Symposium on Computer Animation, San Diego, CA, USA, July 26-27, 2003 Symposium on Computer Animation Rick Parent, Karan Singh, David E. Breen, Ming C. Lin
2002	B	`conf`	Dynamic deformable models for 3D MRI heart segmentation. Image Processing Leonid Zhukov, Zhaosheng Bao, Igor Guskov, John Wood, David E. Breen
2002	J	`jnl`	Level set surface editing operators. ACM Trans. Graph. Ken Museth, David E. Breen, Ross T. Whitaker, Alan H. Barr
2002	A	`conf`	Level-Set Segmentation From Multiple Non-Uniform Volume Datasets. IEEE Visualization Ken Museth, David E. Breen, Leonid Zhukov, Ross T. Whitaker
2001	J	`jnl`	3D Metamorphosis Between Different Types of Geometric Models. Comput. Graph. Forum David E. Breen, Sean Mauch, Ross T. Whitaker, Jia Mao
2001	—	`conf`	3D modeling and segmentation of diffusion weighted MRI data. Image-Guided Procedures Leonid Zhukov, Ken Museth, David E. Breen, Ross T. Whitaker
2001	J	`jnl`	A Level-Set Approach for the Metamorphosis of Solid Models. IEEE Trans. Vis. Comput. Graph. David E. Breen, Ross T. Whitaker
2001	A	`conf`	Fast Extraction of Adaptive Multiresolution Meshes with Guaranteed Properties from Volumetric Data. IEEE Visualization Marcel Gavriliu, Joel Carranza, David E. Breen, Alan H. Barr
2001	J	`jnl`	Modeling methods for the design of 3D broadcloth composite parts. Comput. Aided Des. Masaki Aono, David E. Breen, Michael J. Wozny
2001	—	`ed.`	Proceedings of the IEEE 2001 Symposium on Parallel and Large-Data Visualization and Graphics, PVG 2001, San Diego, California, USA, October 22-23, 2001 IEEE Symposium on Parallel and Large-Data Visualization and Graphics David E. Breen, Alan Heirich, Anton H. J. Koning
2001	—	`conf`	Scalable interactive volume rendering using off-the-shelf components. IEEE Symposium on Parallel and Large-Data Visualization and Graphics Santiago V. Lombeyda, Laurent Moll, Mark Shand, David E. Breen, Alan Heirich
2001	—	`conf`	Segmentation of Biological Volume Datasets Using a Level-Set Framework. VG Ross T. Whitaker, David E. Breen, Ken Museth, Neha Soni
2000	—	`ch.`	3D Scan-Conversion of CSG Models into Distance, Closest-Point and Colour Volumes. Volume Graphics (Graphics) David E. Breen, Sean Mauch, Ross T. Whitaker
2000	A	`conf`	Semi-regular mesh extraction from volumes. IEEE Visualization Zoë J. Wood, Peter Schröder, David E. Breen, Mathieu Desbrun
1999	—	`conf`	A level-set approach for the metamorphosis of solid models. SIGGRAPH Abstracts and Applications David E. Breen, Ross T. Whitaker
1999	J	`jnl`	Would your characters rather go naked?: Cloth Modeling and Animation. J. Graphics, GPU, & Game Tools Donald H. House, David E. Breen
1998	—	`conf`	3D Scan Conversion of CSG Models into Distance Volumes. VVS David E. Breen, Sean Mauch, Ross T. Whitaker
1997	C	`conf`	Automated Camera Calibration and 3D Egomotion Estimation for Augmented Reality Applications. CAIP Dieter Koller, Gudrun Klinker, Eric Rose, David E. Breen, Ross T. Whitaker, Mihran Tuceryan
1997	A*	`conf`	Can we get there from here? Current challenges in cloth design, modeling and animation (panel). SIGGRAPH David E. Breen, Jeffrey W. Eischen, Michael Kass, Nadia Magnenat-Thalmann, Maurizio Vecchione
1997	J	`jnl`	Confluence of Computer Vision and Interactrive Graphics for Augmented Reality. Presence Teleoperators Virtual Environ. Gudrun Klinker, Klaus H. Ahlers, David E. Breen, Pierre-Yves Chevalier, Chris Crampton, Douglas S. Greer, Dieter Koller, André Kramer, Eric Rose, Mihran Tuceryan, Ross T. Whitaker
1997	J	`jnl`	Cost minimization for animated geometric models in computer graphics. Comput. Animat. Virtual Worlds David E. Breen
1997	B	`conf`	Real-time vision-based camera tracking for augmented reality applications. VRST Dieter Koller, Gudrun Klinker, Eric Rose, David E. Breen, Ross T. Whitaker, Mihran Tuceryan
1996	J	`jnl`	Computer Graphics in Textiles and Apparel Modeling. IEEE Computer Graphics and Applications David E. Breen
1996	J	`jnl`	Fitting a woven cloth model to a curved surface: dart insertion. IEEE Computer Graphics and Applications Masaki Aono, Paolo Denti, David E. Breen, Michael J. Wozny
1996	J	`jnl`	Interactive Occlusion and Automatic Object Placement for Augmented Reality. Comput. Graph. Forum David E. Breen, Ross T. Whitaker, Eric Rose, Mihran Tuceryan
1995	—	`ch.`	Annotating Real-World Objects Using Augmented Reality. Computer Graphics Eric Rose, David E. Breen, Klaus H. Ahlers, Chris Crampton, Mihran Tuceryan, Ross T. Whitaker, Douglas S. Greer
1995	J	`jnl`	Calibration Requirements and Procedures for a Monitor-Based Augmented Reality System. IEEE Trans. Vis. Comput. Graph. Mihran Tuceryan, Douglas S. Greer, Ross T. Whitaker, David E. Breen, Eric Rose, Klaus H. Ahlers, Chris Crampton
1995	J	`jnl`	Distributed Augmented Reality for Collaborative Design Applications. Comput. Graph. Forum Klaus H. Ahlers, André Kramer, David E. Breen, Pierre-Yves Chevalier, Chris Crampton, Eric Rose, Mihran Tuceryan, Ross T. Whitaker, Douglas S. Greer
1995	J	`jnl`	Object Calibration for Augmented Reality. Comput. Graph. Forum Ross T. Whitaker, Chris Crampton, David E. Breen, Mihran Tuceryan, Eric Rose
1994	J	`jnl`	Fitting a woven-cloth model to a curved surface: mapping algorithms. Comput. Aided Des. Masaki Aono, David E. Breen, Michael J. Wozny
1994	A*	`conf`	Predicting the drape of woven cloth using interacting particles. SIGGRAPH David E. Breen, Donald H. House, Michael J. Wozny
1992	—	`conf`	A computer-aided broadcloth composite layout design system. Geometric Modeling Masaki Aono, David E. Breen, Michael J. Leonard
1992	J	`jnl`	A physically-based particle model of woven cloth. Vis. Comput. David E. Breen, Donald H. House, Phillip H. Getto
1991	—	`conf`	Constructive Cubes: CSG Evaluation For Display Using Discrete 3-D Scalar Data Sets. Eurographics David E. Breen
1991	A*	`conf`	Geometrically deformed models: a method for extracting closed geometric models form volume data. SIGGRAPH James V. Miller, David E. Breen, William E. Lorensen, Robert M. O'Bara, Michael J. Wozny
1990	J	`jnl`	An object-oriented architecture for a computer animation system. Vis. Comput. Phillip H. Getto, David E. Breen
1990	A	`conf`	Extracting Geometric Models Through Constraint Minimization. IEEE Visualization James V. Miller, David E. Breen, Michael J. Wozny
1989	—	`conf`	Message-Based Object-Oriented Interaction Modeling. Eurographics David E. Breen, Volker Kühn
1989	B	`conf`	Object-oriented programming in a conventional programming environment. COMPSAC David E. Breen, Phillip H. Getto, Anthony A. Apodaca
1987	—	`conf`	The Clockworks: An Object-Oriented Computer Animation System. Eurographics David E. Breen, Phillip H. Getto, Anthony A. Apodaca, Daniel G. Schmidt, Brion D. Sarachan
1986	—	`conf`	Creation and Smooth-Shading of Steiner Patch Tessellations. FJCC David E. Breen