David B. Blumenthal

51 papers A* 3B 3C 1Journal 37Unranked 7

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	How Meta-research Can Pave the Road Towards Trustworthy AI In Healthcare: Catalogue of Ideas and Roadmap for Future Research. CoRR Valerie K. Bürger, Marlie Besouw, Jana Fehr, Riana Minocher, Emma Moorhead, Isabel Velarde, Louis Agha-Mir-Salim, Julia Amann, Alexandra Bannach-Brown, David B. Blumenthal, Kaitlyn Hair, Bert Heinrichs, Moritz Herrmann, Elizabeth Hofvenschiöld, Sune Holm, Anne A. H. de Hond, Sara Kijewski, Stuart McLennan, Timo Minssen, Marco S. Nobile, Nico Pfeifer, Jessica L. Rohmann, Tony Ross-Hellauer, Marija Slavkovik, Karin Tafur, Eleonora Viganò, Magnus Westerlund, Tracey L. Weissgerber, Vince I. Madai
2025	J	`jnl`	Cellular morphodynamics as quantifiers for functional states of resident tissue macrophages in vivo. PLoS Comput. Biol. Miriam Schnitzerlein, Eric Greto, Anja Wegner, Anna Möller, Oliver Aust, Oumaima B. Brahim, David B. Blumenthal, Vasily Zaburdaev, Stefan Uderhardt
2025	J	`jnl`	Deep learning models for unbiased sequence-based PPI prediction plateau at an accuracy of 0.65. Bioinform. Timo Reim, Anne Hartebrodt, David B. Blumenthal, Judith Bernett, Markus List
2025	—	`conf`	Gene Co-expression Networks are Poor Proxies for Expert-Curated Gene Regulatory Networks. GbRPR Suryadipto Sarkar, David B. Blumenthal
2025	J	`jnl`	Inference of differential kinase interaction networks with KINference. Bioinform. Nicolai Meyerhöfer, Nevan J. Krogan, Benjamin J. Polacco, David B. Blumenthal
2025	J	`jnl`	NApy: Efficient Statistics in Python for Large-Scale Heterogeneous Data with Enhanced Support for Missing Data. CoRR Fabian Woller, Lis Arend, Christian Fuchsberger, Markus List, David B. Blumenthal
2024	—	`conf`	A Differentiable Approximation of the Graph Edit Distance. S+SSPR Julia Wallnig, Luc Brun, Benoit Gaüzère, Sébastien Bougleux, Florian Yger, David B. Blumenthal
2024	J	`jnl`	Cracking the black box of deep sequence-based protein-protein interaction prediction. Briefings Bioinform. Judith Bernett, David B. Blumenthal, Markus List
2024	J	`jnl`	Federated singular value decomposition for high-dimensional data. Data Min. Knowl. Discov. Anne Hartebrodt, Richard Röttger, David B. Blumenthal
2024	—	`conf`	NeDRex-Web: An Interactive Web Tool for Drug Repurposing by Exploring Heterogeneous Molecular Networks. BIBM Andreas Maier, Mahdie Rafiei, Elisa Anastasi, Olga I. Zolotareva, James Skelton, Maria L. Elkjaer, Ana I. Casas, Cristian Nogales, Harald H. H. W. Schmidt, Tim Kacprowski, David B. Blumenthal, Anil Wipat, Sepideh Sadegh, Jan Baumbach
2024	J	`jnl`	UnPaSt: unsupervised patient stratification by differentially expressed biclusters in omics data. CoRR Michael Hartung, Andreas Maier, Fernando M. Delgado-Chaves, Yuliya Burankova, Olga I. Isaeva, Fábio Malta de Sá Patroni, Daniel He, Casey Shannon, Katharina Kaufmann, Jens Johann Georg Lohmann, Alexey Savchik, Anne Hartebrodt, Zoe Chervontseva, Farzaneh Firoozbakht, Niklas Probul, Evgenia Zotova, Olga Tsoy, David B. Blumenthal, Martin Ester, Tanja Laske, Jan Baumbach, Olga I. Zolotareva
2023	J	`jnl`	Demographic confounders distort inference of gene regulatory and gene co-expression networks in cancer. Briefings Bioinform. Anna Ketteler, David B. Blumenthal
2023	J	`jnl`	On the role of network topology in German-Jewish recommendation letter networks in the early twentieth century. Appl. Netw. Sci. Lisa Gerlach, David B. Blumenthal
2023	J	`jnl`	Online bias-aware disease module mining with ROBUST-Web. Bioinform. Suryadipto Sarkar, Marta Lucchetta, Andreas Maier, Mohamed M. Abdrabbou, Jan Baumbach, Markus List, Martin H. Schaefer, David B. Blumenthal
2023	J	`jnl`	The edge-preservation similarity for comparing rooted, unordered, node-labeled trees. Pattern Recognit. Lett. Nicolas Boria, Jana Kiederle, Florian Yger, David B. Blumenthal
2022	J	`jnl`	Enumerating dissimilar minimum cost perfect and error-correcting bipartite matchings for robust data matching. Inf. Sci. David B. Blumenthal, Sébastien Bougleux, Anton Dignös, Johann Gamper
2022	J	`jnl`	Federated singular value decomposition for high dimensional data. CoRR Anne Hartebrodt, Richard Röttger, David B. Blumenthal
2022	J	`jnl`	Online Briefings Bioinform. Klaudia Adamowicz, Andreas Maier, Jan Baumbach, David B. Blumenthal
2022	C	`conf`	Querying Temporal Anomalies in Healthcare Information Systems and Beyond. ADBIS Christina Khnaisser, Hind Hamrouni, David B. Blumenthal, Anton Dignös, Johann Gamper
2022	J	`jnl`	Robust disease module mining via enumeration of diverse prize-collecting Steiner trees. Bioinform. Judith Bernett, Dominik Krupke, Sepideh Sadegh, Jan Baumbach, Sándor P. Fekete, Tim Kacprowski, Markus List, David B. Blumenthal
2021	J	`jnl`	A framework for modeling epistatic interaction. Bioinform. David B. Blumenthal, Jan Baumbach, Markus Hoffmann, Tim Kacprowski, Markus List
2021	J	`jnl`	BiCoN: network-constrained biclustering of patients and omics data. Bioinform. Olga Lazareva, Stefan Canzar, Kevin Yuan, Jan Baumbach, David B. Blumenthal, Paolo Tieri, Tim Kacprowski, Markus List
2021	A*	`conf`	Federated Principal Component Analysis for Genome-Wide Association Studies. ICDM Anne Hartebrodt, Reza Nasirigerdeh, David B. Blumenthal, Richard Röttger
2021	B	`conf`	Metric Indexing for Graph Similarity Search. SISAP Franka Bause, David B. Blumenthal, Erich Schubert, Nils M. Kriege
2021	J	`jnl`	Metric Indexing for Graph Similarity Search. CoRR Franka Bause, David B. Blumenthal, Erich Schubert, Nils M. Kriege
2021	A*	`conf`	On the Privacy of Federated Pipelines. SIGIR Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Jan Baumbach, David B. Blumenthal
2021	J	`jnl`	On the limits of active module identification. Briefings Bioinform. Olga Lazareva, Jan Baumbach, Markus List, David B. Blumenthal
2021	J	`jnl`	Scalable generalized median graph estimation and its manifold use in bioinformatics, clustering, classification, and indexing. Inf. Syst. David B. Blumenthal, Nicolas Boria, Sébastien Bougleux, Luc Brun, Johann Gamper, Benoit Gaüzère
2021	J	`jnl`	The Minimum Edit Arborescence Problem and Its Use in Compressing Graph Collections [Extended Version]. CoRR Lucas Gnecco, Nicolas Boria, Sébastien Bougleux, Florian Yger, David B. Blumenthal
2021	B	`conf`	The Minimum Edit Arborescence Problem and Its Use in Compressing Graph Collections. SISAP Lucas Gnecco, Nicolas Boria, Sébastien Bougleux, Florian Yger, David B. Blumenthal
2021	J	`jnl`	Upper Bounding Graph Edit Distance Based on Rings and Machine Learning. Int. J. Pattern Recognit. Artif. Intell. David B. Blumenthal, Johann Gamper, Sébastien Bougleux, Luc Brun
2020	J	`jnl`	Comparing heuristics for graph edit distance computation. VLDB J. David B. Blumenthal, Nicolas Boria, Johann Gamper, Sébastien Bougleux, Luc Brun
2020	J	`jnl`	EpiGEN: an epistasis simulation pipeline. Bioinform. David B. Blumenthal, Lorenzo Viola, Markus List, Jan Baumbach, Paolo Tieri, Tim Kacprowski
2020	J	`jnl`	Fast linear sum assignment with error-correction and no cost constraints. Pattern Recognit. Lett. Sébastien Bougleux, Benoit Gaüzère, David B. Blumenthal, Luc Brun
2020	J	`jnl`	Federated Multi-Mini-Batch: An Efficient Training Approach to Federated Learning in Non-IID Environments. CoRR Mohammad Bakhtiari, Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Amirhossein Bayat, David B. Blumenthal, Markus List, Jan Baumbach
2020	J	`jnl`	Finding k-shortest paths with limited overlap. VLDB J. Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser, David B. Blumenthal
2020	J	`jnl`	Improved local search for graph edit distance. Pattern Recognit. Lett. Nicolas Boria, David B. Blumenthal, Sébastien Bougleux, Luc Brun
2020	J	`jnl`	On the exact computation of the graph edit distance. Pattern Recognit. Lett. David B. Blumenthal, Johann Gamper
2020	J	`jnl`	Privacy-preserving Artificial Intelligence Techniques in Biomedicine. CoRR Reihaneh Torkzadehmahani, Reza Nasirigerdeh, David B. Blumenthal, Tim Kacprowski, Markus List, Julian O. Matschinske, Julian Späth, Nina Kerstin Wenke, Béla Bihari, Tobias Frisch, Anne Hartebrodt, Anne-Christin Hauschild, Dominik Heider, Andreas Holzinger, Walter Hötzendorfer, Markus Kastelitz, Rudolf Mayer, Cristian Nogales, Anastasia Pustozerova, Richard Röttger, Harald H. H. W. Schmidt, Ameli Schwalber, Christof Tschohl, Andrea Wohner, Jan Baumbach
2020	J	`jnl`	What is meaningful research and how should we measure it? Scientometrics Sven Helmer, David B. Blumenthal, Kathrin Paschen
2019	—	`conf`	GEDLIB: A C++ Library for Graph Edit Distance Computation. GbRPR David B. Blumenthal, Sébastien Bougleux, Johann Gamper, Luc Brun
2019	J	`jnl`	Improved local search for graph edit distance. CoRR Nicolas Boria, David B. Blumenthal, Sébastien Bougleux, Luc Brun
2019	J	`jnl`	New Techniques for Graph Edit Distance Computation. CoRR David B. Blumenthal
2019	J	`jnl`	Upper Bounding GED via Transformations to LSAPE Based on Rings and Machine Learning. CoRR David B. Blumenthal, Sébastien Bougleux, Johann Gamper, Luc Brun
2018	—	`conf`	Finding SIGSPATIAL/GIS Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser, David B. Blumenthal
2018	J	`jnl`	Finding k-Dissimilar Paths with Minimum Collective Length. CoRR Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser, David B. Blumenthal
2018	J	`jnl`	Improved Lower Bounds for Graph Edit Distance. IEEE Trans. Knowl. Data Eng. David B. Blumenthal, Johann Gamper
2018	B	`conf`	Quasimetric Graph Edit Distance as a Compact Quadratic Assignment Problem. ICPR David B. Blumenthal, Évariste Daller, Sébastien Bougleux, Luc Brun, Johann Gamper
2018	—	`conf`	Ring Based Approximation of Graph Edit Distance. S+SSPR David B. Blumenthal, Sébastien Bougleux, Johann Gamper, Luc Brun
2017	A*	`conf`	Correcting and Speeding-Up Bounds for Non-Uniform Graph Edit Distance. ICDE David B. Blumenthal, Johann Gamper
2017	—	`conf`	Exact Computation of Graph Edit Distance for Uniform and Non-uniform Metric Edit Costs. GbRPR David B. Blumenthal, Johann Gamper