Dario Pescini

45 papers B 4Misc 1Journal 19Unranked 21
YearRankTypeTitle / Venue / Authors
2022 J jnl
INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation.
PLoS Comput. Biol.
Marzia Di Filippo, Dario Pescini, Bruno Giovanni Galuzzi, Marcella Bonanomi, Daniela Gaglio, Eleonora Mangano, Clarissa Consolandi, Lilia Alberghina, Marco Vanoni, Chiara Damiani
2021 J jnl
Accelerated global sensitivity analysis of genome-wide constraint-based metabolic models.
BMC Bioinform.
Marco S. Nobile, Vasco Coelho, Dario Pescini, Chiara Damiani
2021 J jnl
Extending Association Rule Mining to Microbiome Pattern Analysis: Tools and Guidelines to Support Real Applications.
Frontiers Bioinform.
Giulia Agostinetto, Anna Sandionigi, Antonia Bruno, Dario Pescini, Maurizio Casiraghi
2021 J jnl
GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction.
PLoS Comput. Biol.
Marzia Di Filippo, Chiara Damiani, Dario Pescini
2020 J jnl
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System.
Fundam. Informaticae
Davide Maspero, Chiara Damiani, Marco Antoniotti, Alex Graudenzi, Marzia Di Filippo, Marco Vanoni, Giulio Caravagna, Riccardo Colombo, Daniele Ramazzotti, Dario Pescini
2019 — conf
Integration of Single-Cell RNA-Sequencing Data into Flux Balance Cellular Automata.
CIBB
Davide Maspero, Marzia Di Filippo, Fabrizio Angaroni, Dario Pescini, Giancarlo Mauri, Marco Vanoni, Alex Graudenzi, Chiara Damiani
2019 J jnl
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism.
PLoS Comput. Biol.
Chiara Damiani, Davide Maspero, Marzia Di Filippo, Riccardo Colombo, Dario Pescini, Alex Graudenzi, Hans V. Westerhoff, Lilia Alberghina, Marco Vanoni, Giancarlo Mauri
2018 J jnl
Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes.
BMC Bioinform.
Riccardo Colombo, Chiara Damiani, David R. Gilbert, Monika Heiner, Giancarlo Mauri, Dario Pescini
2018 — conf
Global Sensitivity Analysis of Constraint-Based Metabolic Models.
CIBB
Chiara Damiani, Dario Pescini, Marco S. Nobile
2018 — conf
Synchronization Effects in a Metabolism-Driven Model of Multi-cellular System.
WIVACE
Davide Maspero, Alex Graudenzi, Satwinder Singh, Dario Pescini, Giancarlo Mauri, Marco Antoniotti, Chiara Damiani
2017 J jnl
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect.
PLoS Comput. Biol.
Chiara Damiani, Riccardo Colombo, Daniela Gaglio, Fabrizia Mastroianni, Dario Pescini, Hans V. Westerhoff, Giancarlo Mauri, Marco Vanoni, Lilia Alberghina
2017 J jnl
popFBA: tackling intratumour heterogeneity with Flux Balance Analysis.
Bioinform.
Chiara Damiani, Marzia Di Filippo, Dario Pescini, Davide Maspero, Riccardo Colombo, Giancarlo Mauri
2016 — conf
Constraining Mechanism Based Simulations to Identify Ensembles of Parametrizations to Characterize Metabolic Features.
CIBB
Riccardo Colombo, Chiara Damiani, Giancarlo Mauri, Dario Pescini
2016 — conf
Constraint-Based Modeling and Simulation of Cell Populations.
WIVACE
Marzia Di Filippo, Chiara Damiani, Riccardo Colombo, Dario Pescini, Giancarlo Mauri
2016 — conf
Linking Alterations in Metabolic Fluxes with Shifts in Metabolite Levels by Means of Kinetic Modeling.
WIVACE
Chiara Damiani, Riccardo Colombo, Marzia Di Filippo, Dario Pescini, Giancarlo Mauri
2016 J jnl
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models.
Comput. Biol. Chem.
Marzia Di Filippo, Riccardo Colombo, Chiara Damiani, Dario Pescini, Daniela Gaglio, Marco Vanoni, Lilia Alberghina, Giancarlo Mauri
2014 J jnl
An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes.
Nat. Comput.
Chiara Damiani, Dario Pescini, Riccardo Colombo, Sara Molinari, Lilia Alberghina, Marco Vanoni, Giancarlo Mauri
2013 — conf
An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis.
WIVACE
Chiara Damiani, Riccardo Colombo, Sara Molinari, Dario Pescini, Daniela Gaglio, Marco Vanoni, Lilia Alberghina, Giancarlo Mauri
2013 — conf
GPU-powered Simulation Methodologies for Biological Systems.
WIVACE
Daniela Besozzi, Giulio Caravagna, Paolo Cazzaniga, Marco S. Nobile, Dario Pescini, Alessandro Re
2013 J jnl
In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae.
BMC Syst. Biol.
Flavio Amara, Riccardo Colombo, Paolo Cazzaniga, Dario Pescini, Attila Csikász-Nagy, Marco Falconi, Daniela Besozzi, Paolo Plevani
2013 B conf
Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization.
IEEE Congress on Evolutionary Computation
Marco S. Nobile, Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri
2013 B conf
cupSODA: A CUDA-Powered Simulator of Mass-Action Kinetics.
PaCT
Marco S. Nobile, Daniela Besozzi, Paolo Cazzaniga, Giancarlo Mauri, Dario Pescini
2012 — conf
A GPU-Based Multi-swarm PSO Method for Parameter Estimation in Stochastic Biological Systems Exploiting Discrete-Time Target Series.
EvoBIO
Marco S. Nobile, Daniela Besozzi, Paolo Cazzaniga, Giancarlo Mauri, Dario Pescini
2012 — conf
Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs.
GECCO (Companion)
Marco S. Nobile, Daniela Besozzi, Paolo Cazzaniga, Giancarlo Mauri, Dario Pescini
2012 J jnl
The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae.
EURASIP J. Bioinform. Syst. Biol.
Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri, Sonia Colombo, Enzo Martegani
2011 B conf
Grid Computing for Sensitivity Analysis of Stochastic Biological Models.
PaCT
Ivan Merelli, Dario Pescini, Ettore Mosca, Paolo Cazzaniga, Carlo Maj, Giancarlo Mauri, Luciano Milanesi
2011 J jnl
Modeling Diffusion in a Signal Transduction Pathway: the Use of Virtual Volumes in P Systems.
Int. J. Found. Comput. Sci.
Daniela Besozzi, Paolo Cazzaniga, Stefania Cocolo, Giancarlo Mauri, Dario Pescini
2010 — conf
An Analysis on the Influence of Network Topologies on Local and Global Dynamics of Metapopulation Systems
AMCA-POP
Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri
2010 — conf
BioSimWare: A Software for the Modeling, Simulation and Analysis of Biological Systems.
Int. Conf. on Membrane Computing
Daniela Besozzi, Paolo Cazzaniga, Giancarlo Mauri, Dario Pescini
2010 J jnl
Computing with energy and chemical reactions.
Nat. Comput.
Alberto Leporati, Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Claudio Ferretti
2010 — conf
Modelling Spatial Heterogeneity and Macromolecular Crowding with Membrane Systems.
Int. Conf. on Membrane Computing
Ettore Mosca, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri, Luciano Milanesi
2009 J jnl
(Tissue) P systems with cell polarity.
Math. Struct. Comput. Sci.
Daniela Besozzi, Nadia Busi, Paolo Cazzaniga, Claudio Ferretti, Alberto Leporati, Giancarlo Mauri, Dario Pescini, Claudio Zandron
2009 — conf
A Comparison of Genetic Algorithms and Particle Swarm Optimization for Parameter Estimation in Stochastic Biochemical Systems.
EvoBIO
Daniela Besozzi, Paolo Cazzaniga, Giancarlo Mauri, Dario Pescini, Leonardo Vanneschi
2009 — conf
A Multi-volume Approach to Stochastic Modeling with Membrane Systems.
Algorithmic Bioprocesses
Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri
2009 — conf
A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems.
Workshop on Membrane Computing
Paolo Cazzaniga, Giancarlo Mauri, Luciano Milanesi, Ettore Mosca, Dario Pescini
2009 — conf
A study on the combined interplay between stochastic fluctuations and the number of flagella in bacterial chemotaxis
COMPMOD
Daniela Besozzi, Paolo Cazzaniga, Matteo Dugo, Dario Pescini, Giancarlo Mauri
2008 — conf
First Steps Towards a Wet Implementation for t-DPP.
Workshop on Membrane Computing
Dario Pescini, Paolo Cazzaniga, Claudio Ferretti, Giancarlo Mauri
2008 J jnl
Modelling metapopulations with stochastic membrane systems.
Biosyst.
Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri
2007 J jnl
Cycles and communicating classes in membrane systems and molecular dynamics.
Theor. Comput. Sci.
Michael Muskulus, Daniela Besozzi, Robert Brijder, Paolo Cazzaniga, Sanne Houweling, Dario Pescini, Grzegorz Rozenberg
2006 J jnl
Dynamical probabilistic P systems.
Int. J. Found. Comput. Sci.
Dario Pescini, Daniela Besozzi, Giancarlo Mauri, Claudio Zandron
2006 — conf
Tau Leaping Stochastic Simulation Method in P Systems.
Workshop on Membrane Computing
Paolo Cazzaniga, Dario Pescini, Daniela Besozzi, Giancarlo Mauri
2006 — conf
Towards Probabilistic Model Checking on P Systems Using PRISM.
Workshop on Membrane Computing
Francisco José Romero-Campero, Marian Gheorghe, Luca Bianco, Dario Pescini, Mario J. Pérez-Jiménez, Rodica Ceterchi
2006 — conf
Towards a P Systems Pseudomonas Quorum Sensing Model.
Workshop on Membrane Computing
Luca Bianco, Dario Pescini, Peter A. Siepmann, Natalio Krasnogor, Francisco José Romero-Campero, Marian Gheorghe
2005 B conf
Analysis and Simulation of Dynamics in Probabilistic P Systems.
DNA
Dario Pescini, Daniela Besozzi, Claudio Zandron, Giancarlo Mauri
2005 Misc conf
Investigating Local Evolutions in Dynamical Probabilistic P Systems.
SYNASC
Dario Pescini, Daniela Besozzi, Giancarlo Mauri