Dario Ghersi

26 papers Misc 1Journal 15Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
TRain: T-cell receptor automated immunoinformatics.
BMC Bioinform.
Austin Seamann, Maia Bennett-Boehm, Ryan Ehrlich, Anna Gil, Liisa K. Selin, Dario Ghersi
2025 J jnl
VIPER: Virus Inhibition Via Peptide Engineering and Receptor Mimicry.
J. Comput. Biol.
Anna Sophie Klingenberg, Dario Ghersi
2022 J jnl
Variant calling enhances the identification of cancer cells in single-cell RNA sequencing data.
PLoS Comput. Biol.
William Gasper, Francesca Rossi, Matteo Ligorio, Dario Ghersi
2021 — conf
Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research.
BIBM
William Gasper, Jiahao Ma, Dario Ghersi, Etienne Z. Gnimpieba, Venkataramana Gadhamshetty, Parvathi Chundi
2021 J jnl
SwarmTCR: a computational approach to predict the specificity of T cell receptors.
BMC Bioinform.
Ryan Ehrlich, Larisa Kamga, Anna Gil, Katherine Ruiz De Luzuriaga, Liisa K. Selin, Dario Ghersi
2020 — conf
MeSH Indexing Using the Biomedical Citation Network.
BCB
William Gasper, Parvathi Chundi, Dario Ghersi
2020 J jnl
Measurement of structural change in co-expression networks from cancer gene expression data.
Int. J. Data Min. Bioinform.
Qianran Li, Dario Ghersi, Ishwor Thapa, Ling Zhang, Hesham Ali, Kate Cooper
2020 J jnl
NEEP: null empirically estimated p-values for high-throughput molecular survival analysis.
J. Open Source Softw.
Sean West, Hesham Ali, Dario Ghersi
2019 — ch.
Biological Pathway Analysis.
Encyclopedia of Bioinformatics and Computational Biology (1)
Ramakanth Chirravuri Venkata, Dario Ghersi
2019 — ch.
Biological Pathway Data Formats and Standards.
Encyclopedia of Bioinformatics and Computational Biology (1)
Ramakanth Chirravuri Venkata, Dario Ghersi
2019 — ch.
Cluster Analysis of Biological Networks.
Encyclopedia of Bioinformatics and Computational Biology (1)
Asuda Sharma, Hesham Ali, Dario Ghersi
2019 J jnl
FunSet: an open-source software and web server for performing and displaying Gene Ontology enrichment analysis.
BMC Bioinform.
Matthew L. Hale, Ishwor Thapa, Dario Ghersi
2019 — conf
Identifying Structural Changes in Correlation Networks Models of Cancer Gene Expression by Stage.
BIBM
Qianran Li, Dario Ghersi, Ishwor Thapa, Ling Zhang, Hesham Ali, Kate Cooper
2019 J jnl
Uncovering and characterizing splice variants associated with survival in lung cancer patients.
PLoS Comput. Biol.
Sean West, Sushil Kumar, Surinder K. Batra, Hesham Ali, Dario Ghersi
2018 J jnl
Two critical positions in zinc finger domains are heavily mutated in three human cancer types.
PLoS Comput. Biol.
Daniel Munro, Dario Ghersi, Mona Singh
2017 — conf
Analyzing T cell receptor alpha/beta usage in binding to the pMHC.
BIBM
Ryan Ehrlich, Dario Ghersi
2017 J jnl
Comparison of a quantum random number generator with pseudorandom number generators for their use in molecular Monte Carlo simulations.
J. Comput. Chem.
Dario Ghersi, Abhishek Parakh, Mihaly Mezei
2017 — conf
In-silico analysis of the "memory anti-Naïve" effect in anti-viral cross-reactive responses.
BIBM
Filippo Castiglione, Dario Ghersi, Franco Celada
2016 Misc conf
Forecasting the Spread of Mosquito-Borne Disease using Publicly Accessible Data: A Case Study in Chikungunya.
AMIA
Kathryn M. Cooper, Dhundy Bastola, Robin A. Gandhi, Dario Ghersi, Steven H. Hinrichs, Marsha Morien, Ann L. Fruhling
2016 — conf
Recovering Bound Forms of Protein Structures Using the Elastic Network Model and Molecular Interaction Fields.
BCB
Dario Ghersi, Roberto Sanchez
2015 — conf
A novel approach to identify shared fragments in drugs and natural products.
BIBM
Akshay Balasubramanya, Ishwor Thapa, Dhundy Bastola, Dario Ghersi
2015 J jnl
Genome-Wide Detection and Analysis of Multifunctional Genes.
PLoS Comput. Biol.
Yuri Pritykin, Dario Ghersi, Mona Singh
2014 J jnl
molBLOCKS: decomposing small molecule sets and uncovering enriched fragments.
Bioinform.
Dario Ghersi, Mona Singh
2013 J jnl
Disentangling function from topology to infer the network properties of disease genes.
BMC Syst. Biol.
Dario Ghersi, Mona Singh
2009 J jnl
EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures.
Bioinform.
Dario Ghersi, Roberto Sanchez
2009 J jnl
SITEHOUND-web: a server for ligand binding site identification in protein structures.
Nucleic Acids Res.
Marylens Hernandez, Dario Ghersi, Roberto Sanchez