Daniel W. A. Buchan

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
Foldclass and Merizo-search: scalable structural similarity search for single- and multi-domain proteins using geometric learning.
Bioinform.
Shaun M. Kandathil, Andy M. Lau, Daniel W. A. Buchan, David T. Jones
2025 J jnl
Less is more: improving cell-type identification with augmentation-free single-cell RNA-Seq contrastive learning.
Bioinform.
Ibrahim Alsaggaf, Daniel W. A. Buchan, Cen Wan
2020 J jnl
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
Nucleic Acids Res.
Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Robert D. Finn, Julian Gough, David T. Jones, Lawrence A. Kelley, Typhaine Paysan-Lafosse, Su Datt Lam, Alexey G. Murzin, Arun Prasad Pandurangan, Gustavo A. Salazar, Marcin J. Skwark, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo
2019 J jnl
The PSIPRED Protein Analysis Workbench: 20 years on.
Nucleic Acids Res.
Daniel W. A. Buchan, David T. Jones
2017 J jnl
EigenTHREADER: analogous protein fold recognition by efficient contact map threading.
Bioinform.
Daniel W. A. Buchan, David T. Jones
2015 J jnl
Genome3D: exploiting structure to help users understand their sequences.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Domenico Cozzetto, Jose M. Dana, Ioannis Filippis, Julian Gough, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Jaina Mistry, Alexey G. Murzin, Bernardo Ochoa-Montaño, Matt E. Oates, Marco Punta, Owen J. L. Rackham, Jonathan Stahlhacke, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo
2013 J jnl
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana, Ioannis Filippis, Julian Gough, Sarah Hunter, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Alex L. Mitchell, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham, James Smith, Michael J. E. Sternberg, Sameer Velankar, Corin Yeats, Christine A. Orengo
2013 J jnl
Protein function prediction by massive integration of evolutionary analyses and multiple data sources.
BMC Bioinform.
Domenico Cozzetto, Daniel W. A. Buchan, Kevin Bryson, David T. Jones
2013 J jnl
Scalable web services for the PSIPRED Protein Analysis Workbench.
Nucleic Acids Res.
Daniel W. A. Buchan, Federico Minneci, Tim C. O. Nugent, Kevin Bryson, David T. Jones
2012 J jnl
PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments.
Bioinform.
David T. Jones, Daniel W. A. Buchan, Domenico Cozzetto, Massimiliano Pontil
2010 J jnl
Protein annotation and modelling servers at University College London.
Nucleic Acids Res.
Daniel W. A. Buchan, S. M. Ward, Anna E. Lobley, Timothy Nugent, Kevin Bryson, David T. Jones
2003 J jnl
Gene3D: structural assignments for the biologist and bioinformaticist alike.
Nucleic Acids Res.
Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David A. Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo
2001 J jnl
A rapid classification protocol for the CATH Domain Database to support structural genomics.
Nucleic Acids Res.
Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David A. Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo