Daniel Valenzuela

23 papers B 4C 1Journal 14Unranked 2
YearRankTypeTitle / Venue / Authors
2021 J jnl
Founder reconstruction enables scalable and seamless pangenomic analysis.
Bioinform.
Tuukka Norri, Bastien Cazaux, Saska Dönges, Daniel Valenzuela, Veli Mäkinen
2021 J jnl
Lempel-Ziv Parsing for Sequences of Blocks.
Algorithms
Dmitry Kosolobov, Daniel Valenzuela
2020 J jnl
Lempel-Ziv-Like Parsing in Small Space.
Algorithmica
Dmitry Kosolobov, Daniel Valenzuela, Gonzalo Navarro, Simon J. Puglisi
2020 B conf
Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark.
BigData
Altti Ilari Maarala, Ossi Arasalo, Daniel Valenzuela, Keijo Heljanko, Veli Mäkinen
2019 J jnl
Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics.
IEEE ACM Trans. Comput. Biol. Bioinform.
Romeo Rizzi, Massimo Cairo, Veli Mäkinen, Alexandru I. Tomescu, Daniel Valenzuela
2019 J jnl
Lempel-Ziv-like Parsing in Small Space.
CoRR
Daniel Valenzuela, Dmitry Kosolobov, Gonzalo Navarro, Simon J. Puglisi
2018 J jnl
Towards pan-genome read alignment to improve variation calling.
BMC Genom.
Daniel Valenzuela, Tuukka Norri, Niko Välimäki, Esa Pitkänen, Veli Mäkinen
2017 — —
Algorithms and Data Structures for Sequence Analysis in the Pan-Genomic Era.
Daniel Valenzuela
2017 J jnl
Compressed Spaced Suffix Arrays.
Math. Comput. Sci.
Travis Gagie, Giovanni Manzini, Daniel Valenzuela
2017 J jnl
Interval scheduling maximizing minimum coverage.
Discret. Appl. Math.
Veli Mäkinen, Valeria Staneva, Alexandru I. Tomescu, Daniel Valenzuela, Sebastian Wilzbach
2016 C conf
Analyzing Relative Lempel-Ziv Reference Construction.
SPIRE
Travis Gagie, Simon J. Puglisi, Daniel Valenzuela
2016 B conf
CHICO: A Compressed Hybrid Index for Repetitive Collections.
SEA
Daniel Valenzuela
2016 — ch.
Compressed Suffix Array.
Encyclopedia of Algorithms
Djamal Belazzougui, Veli Mäkinen, Daniel Valenzuela
2016 J jnl
Diploid Alignment is NP-hard.
CoRR
Romeo Rizzi, Massimo Cairo, Veli Mäkinen, Daniel Valenzuela
2015 — conf
Diploid Alignments and Haplotyping.
ISBRA
Veli Mäkinen, Daniel Valenzuela
2015 J jnl
Interval scheduling maximizing minimum coverage.
CoRR
Veli Mäkinen, Valeria Staneva, Alexandru I. Tomescu, Daniel Valenzuela
2014 — conf
Compressed Spaced Suffix Arrays.
ICABD
Travis Gagie, Giovanni Manzini, Daniel Valenzuela
2014 J jnl
General Document Retrieval in Compact Space.
ACM J. Exp. Algorithmics
Gonzalo Navarro, Simon J. Puglisi, Daniel Valenzuela
2013 J jnl
Compressed Spaced Suffix Arrays.
CoRR
Travis Gagie, Giovanni Manzini, Daniel Valenzuela
2013 J jnl
Improved compressed indexes for full-text document retrieval.
J. Discrete Algorithms
Djamal Belazzougui, Gonzalo Navarro, Daniel Valenzuela
2012 B conf
Space-Efficient Top-k Document Retrieval.
SEA
Gonzalo Navarro, Daniel Valenzuela
2011 B conf
Practical Compressed Document Retrieval.
SEA
Gonzalo Navarro, Simon J. Puglisi, Daniel Valenzuela
2011 J jnl
Practical Top-K Document Retrieval in Reduced Space
CoRR
Gonzalo Navarro, Daniel Valenzuela