Daniel Segrè

12 papers Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Integrative analysis across metagenomic taxonomic classifiers: A case study of the gut microbiome in aging and longevity in the Integrative Longevity Omics Study.
PLoS Comput. Biol.
Tanya T. Karagiannis, Ye Chen, Sarah Bald, Albert Tai, Eric R. Reed, Sofiya Milman, Stacy Andersen, Thomas T. Perls, Daniel Segrè, Paola Sebastiani, Meghan I. Short
2016 — conf
Optimal allocation of metabolic functions among organisms in a microbial ecosystem.
CDC
Qi Zhao, Daniel Segrè, Ioannis Ch. Paschalidis
2016 J jnl
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.
PLoS Comput. Biol.
Brian Granger, Yi-Chien Chang, Yan Wang, Charles DeLisi, Daniel Segrè, Zhenjun Hu
2015 — conf
Learning cellular objectives from fluxes by inverse optimization.
CDC
Qi Zhao, Arion Stettner, Ed Reznik, Daniel Segrè, Ioannis Ch. Paschalidis
2013 J jnl
Flux Imbalance Analysis and the Sensitivity of Cellular Growth to Changes in Metabolite Pools.
PLoS Comput. Biol.
Ed Reznik, Pankaj Mehta, Daniel Segrè
2012 J jnl
Comparative multi-goal tradeoffs in systems engineering of microbial metabolism.
BMC Syst. Biol.
David Byrne, Alexandra Dumitriu, Daniel Segrè
2012 J jnl
Temporal Expression-based Analysis of Metabolism.
PLoS Comput. Biol.
Sara B. Collins, Ed Reznik, Daniel Segrè
2011 J jnl
A system-level approach for deciphering the transcriptional response to prion infection.
Bioinform.
Mattia Zampieri, Giuseppe Legname, Daniel Segrè, Claudio Altafini
2011 J jnl
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Nucleic Acids Res.
Richard J. Roberts, Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Revonda M. Pokrzywa, Han-Pil Choi, Lina L. Faller, Jyotsna Guleria, Genevieve Housman, Niels Klitgord, Varun Mazumdar, Mark G. McGettrick, Lais Osmani, Rajeswari Swaminathan, Kevin R. Tao, Stanley Letovsky, Dennis Vitkup, Daniel Segrè, Steven L. Salzberg, Charles DeLisi, Martin Steffen, Simon Kasif
2010 J jnl
Environments that Induce Synthetic Microbial Ecosystems.
PLoS Comput. Biol.
Niels Klitgord, Daniel Segrè
2010 J jnl
Signatures of Arithmetic Simplicity in Metabolic Network Architecture.
PLoS Comput. Biol.
William J. Riehl, Paul L. Krapivsky, Sidney Redner, Daniel Segrè
2003 J jnl
Mesobiotic Emergence: molecular and Ensemble Complexity in Early Evolution.
Adv. Complex Syst.
Barak Shenhav, Daniel Segrè, Doron Lancet