Daniel Hoffmann

39 papers A* 2A 2B 1Journal 26Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
BAYAS: simplifying access to Bayesian analysis for biologists.
Bioinform.
Christoph Waterkamp, Daniel Hoffmann
2024 J jnl
scBubbletree: computational approach for visualization of single cell RNA-seq data.
BMC Bioinform.
Simo Kitanovski, Yingying Cao, Dimitris Ttoouli, Farnoush Farahpour, Jun Wang, Daniel Hoffmann
2022 J jnl
HAMdetector: a Bayesian regression model that integrates information to detect HLA-associated mutations.
Bioinform.
Daniel Habermann, Hadi Kharimzadeh, Andreas Walker, Yang Li, Rongge Yang, Rolf Kaiser, Zabrina L. Brumme, Jörg Timm, Michael Roggendorf, Daniel Hoffmann
2021 J jnl
Classifier uncertainty: evidence, potential impact, and probabilistic treatment.
PeerJ Comput. Sci.
Niklas Tötsch, Daniel Hoffmann
2020 J jnl
A Self-Adaptive and Self-Sufficient Energy Harvesting System.
Sensors
Mario Mösch, Gerhard Fischerauer, Daniel Hoffmann
2020 J jnl
Classifier uncertainty: evidence, potential impact, and probabilistic treatment.
CoRR
Niklas Tötsch, Daniel Hoffmann
2020 J jnl
IgGeneUsage: differential gene usage in immune repertoires.
Bioinform.
Simo Kitanovski, Daniel Hoffmann
2018 J jnl
Locating Large, Flexible Ligands on Proteins.
J. Chem. Inf. Model.
Jean-Noël Grad, Alba Gigante, Christoph Wilms, Jan Nikolaj Dybowski, Ludwig Ohl, Christian Ottmann, Carsten Schmuck, Daniel Hoffmann
2017 J jnl
Quantitative Comparison of Abundance Structures of Generalized Communities: From B-Cell Receptor Repertoires to Microbiomes.
PLoS Comput. Biol.
Mohammadkarim Saeedghalati, Farnoush Farahpour, Bettina Budeus, Anja Lange, Astrid M. Westendorf, Marc Seifert, Ralf Küppers, Daniel Hoffmann
2016 A conf
Using A/B testing in MOOC environments.
LAK
Jan Renz, Daniel Hoffmann, Thomas Staubitz, Christoph Meinel
2015 A* conf
Proprioceptive Interaction.
CHI
Pedro Lopes, Alexandra Ion, Willi Mueller, Daniel Hoffmann, Patrik Jonell, Patrick Baudisch
2015 — conf
Proprioceptive Interaction.
CHI Extended Abstracts
Pedro Lopes, Alexandra Ion, Willi Müller, Daniel Hoffmann, Patrik Jonell, Patrick Baudisch
2014 J jnl
A simple structure-based model for the prediction of HIV-1 co-receptor tropism.
BioData Min.
Dominik Heider, Jan Dybowski, Christoph Wilms, Daniel Hoffmann
2014 J jnl
Signaling Domain of Sonic Hedgehog as Cannibalistic Calcium-Regulated Zinc-Peptidase.
PLoS Comput. Biol.
Rocio Rebollido-Rios, Shyam Bandari, Christoph Wilms, Stanislav Jakuschev, Andrea Vortkamp, Kay Grobe, Daniel Hoffmann
2013 — conf
GravitySpace: tracking users and their poses in a smart room using a pressure-sensing floor.
CHI Extended Abstracts
Alan Bränzel, Christian Holz, Daniel Hoffmann, Dominik Schmidt, Marius Knaust, Patrick Lühne, René Meusel, Stephan Richter, Patrick Baudisch
2013 A* conf
GravitySpace: tracking users and their poses in a smart room using a pressure-sensing floor.
CHI
Alan Bränzel, Christian Holz, Daniel Hoffmann, Dominik Schmidt, Marius Knaust, Patrick Lühne, René Meusel, Stephan Richter, Patrick Baudisch
2012 J jnl
The Normal-Mode Entropy in the MM/GBSA Method: Effect of System Truncation, Buffer Region, and Dielectric Constant.
J. Chem. Inf. Model.
Samuel Genheden, Oliver Kuhn, Paulius Mikulskis, Daniel Hoffmann, Ulf Ryde
2012 — conf
Unsupervised Dimension Reduction Methods for Protein Sequence Classification.
GfKl
Dominik Heider, Christoph Bartenhagen, Jan Nikolaj Dybowski, Sascha Hauke, Martin Pyka, Daniel Hoffmann
2011 J jnl
Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers.
BioData Min.
Jan Nikolaj Dybowski, Mona Riemenschneider, Sascha Hauke, Martin Pyka, Jens Verheyen, Daniel Hoffmann, Dominik Heider
2011 J jnl
Interpol: An R package for preprocessing of protein sequences.
BioData Min.
Dominik Heider, Daniel Hoffmann
2010 J jnl
Predicting Bevirimat resistance of HIV-1 from genotype.
BMC Bioinform.
Dominik Heider, Jens Verheyen, Daniel Hoffmann
2010 J jnl
Prediction of Co-Receptor Usage of HIV-1 from Genotype.
PLoS Comput. Biol.
Jan Nikolaj Dybowski, Dominik Heider, Daniel Hoffmann
2010 — conf
Spatial contiguity and implicit learning in hypertext.
HT
Seungoh Paek, Daniel Hoffmann, Antonios Saravanos
2009 J jnl
A Novel Algorithm for Macromolecular Epitope Matching.
Algorithms
Stanislav Jakuschev, Daniel Hoffmann
2008 J jnl
Evolutionary Pareto-optimization of stably folding peptides.
BMC Bioinform.
Wolfram Gronwald, Tim Hohm, Daniel Hoffmann
2006 J jnl
A Multiobjective Evolutionary Method for the Design of Peptidic Mimotopes.
J. Comput. Biol.
Tim Hohm, Philipp Limbourg, Daniel Hoffmann
2006 — conf
Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV.
DILS
Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig
2005 A conf
A multi-objective evolutionary approach to peptide structure redesign and stabilization.
GECCO
Tim Hohm, Daniel Hoffmann
2005 — conf
Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking.
PKDD
Tobias Sing, Valentina Svicher, Niko Beerenwinkel, Francesca Ceccherini-Silberstein, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Mark Oette, Jürgen K. Rockstroh, Gerd Fätkenheuer, Carlo-Federico Perno, Thomas Lengauer
2005 J jnl
Computational methods for the design of effective therapies against drug resistant HIV strains.
Bioinform.
Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer
2005 J jnl
Learning Multiple Evolutionary Pathways from Cross-Sectional Data.
J. Comput. Biol.
Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
2005 J jnl
Mtreemix: a software package for learning and using mixture models of mutagenetic trees.
Bioinform.
Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer
2004 B conf
Learning multiple evolutionary pathways from cross-sectional data.
RECOMB
Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
2003 J jnl
Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes.
Nucleic Acids Res.
Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter
2003 — conf
Methods for optimizing antiviral combination therapies.
ISMB (Supplement of Bioinformatics)
Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig
2002 J jnl
Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype.
Proc. Natl. Acad. Sci. USA
Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
2001 J jnl
Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests.
IEEE Intell. Syst.
Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
2001 — conf
Identifying drug resistance-associated patterns in HIV genotypes.
German Conference on Bioinformatics
Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
1988 J jnl
Microprocessor-based robotic system for control of fluid connections in the cardiac catheterization laboratory.
IEEE Trans. Biomed. Eng.
Lloyd A. Marks, Kenneth L. Short, Daniel Hoffmann, Albert Lew