Daniel H. Huson

74 papers A* 1A 2B 5C 6Journal 49Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
Sketch, capture and layout phylogenies.
PLoS Comput. Biol.
Daniel H. Huson
2024 J jnl
CatReNet: interactive analysis of (auto-) catalytic reaction networks.
Bioinform.
Daniel H. Huson, Joana C. Xavier, Mike A. Steel
2024 A* conf
Leverage the Explainability of Transformer Models to Improve the DNA 5-Methylcytosine Identification (Student Abstract).
AAAI
Wenhuan Zeng, Daniel H. Huson
2023 J jnl
MeganServer: facilitating interactive access to metagenomic data on a server.
Bioinform.
Anupam Gautam, Wenhuan Zeng, Daniel H. Huson
2023 J jnl
Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification.
Briefings Bioinform.
Anupam Gautam, Debaleena Bhowmik, Sayantani Basu, Wenhuan Zeng, Abhishake Lahiri, Daniel H. Huson, Sandip Paul
2023 J jnl
NeighborNet: improved algorithms and implementation.
Frontiers Bioinform.
David Bryant, Daniel H. Huson
2023 J jnl
Visualizing incompatibilities in phylogenetic trees using consensus outlines.
Frontiers Bioinform.
Daniel H. Huson, Banu Cetinkaya
2022 J jnl
DeepToA: an ensemble deep-learning approach to predicting the theater of activity of a microbiome.
Bioinform.
Wenhuan Zeng, Anupam Gautam, Daniel H. Huson
2021 J jnl
On the Application of Advanced Machine Learning Methods to Analyze Enhanced, Multimodal Data from Persons Infected with COVID-19.
Comput.
Wenhuan Zeng, Anupam Gautam, Daniel H. Huson
2021 J jnl
Tegula - exploring a galaxy of two-dimensional periodic tilings.
Comput. Aided Geom. Des.
Rüdiger Zeller, Olaf Delgado-Friedrichs, Daniel H. Huson
2020 J jnl
MAIRA- real-time taxonomic and functional analysis of long reads on a laptop.
BMC Bioinform.
Benjamin Albrecht, Caner Bagci, Daniel H. Huson
2020 J jnl
Tegula - exploring a galaxy of two-dimensional periodic tilings.
CoRR
Rüdiger Zeller, Olaf Delgado-Friedrichs, Daniel H. Huson
2018 J jnl
Autumn Algorithm - Computation of Hybridization Networks for Realistic Phylogenetic Trees.
IEEE ACM Trans. Comput. Biol. Bioinform.
Daniel H. Huson, Simone Linz
2018 J jnl
Dynamics of the human gut phageome during antibiotic treatment.
Comput. Biol. Chem.
Anna Górska, Silke Peter, Matthias Willmann, Ingo Autenrieth, Robert Schlaberg, Daniel H. Huson
2017 J jnl
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?
BMC Genom.
Monika Balvociute, Daniel H. Huson
2017 J jnl
The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery.
Nucleic Acids Res.
Mohammad Alanjary, Brent Kronmiller, Martina Adamek, Kai Blin, Tilmann Weber, Daniel H. Huson, Benjamin Philmus, Nadine Ziemert
2016 J jnl
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data.
PLoS Comput. Biol.
Daniel H. Huson, Sina Beier, Isabell Flade, Anna Górska, Mohamed El-Hadidi, Suparna Mitra, Hans-Joachim Ruscheweyh, Rewati Tappu
2016 J jnl
RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys.
BMC Bioinform.
Chao Xie, Chin Lui Wesley Goi, Daniel H. Huson, Peter F. R. Little, Rohan B. H. Williams
2014 J jnl
A poor man's BLASTX - high-throughput metagenomic protein database search using PAUDA.
Bioinform.
Daniel H. Huson, Chao Xie
2012 J jnl
Fast computation of minimum hybridization networks.
Bioinform.
Benjamin Albrecht, Céline Scornavacca, Alberto Cenci, Daniel H. Huson
2011 J jnl
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.
BMC Bioinform.
Suparna Mitra, Paul Rupek, Daniel C. Richter, Tim Urich, Jack A. Gilbert, Folker Meyer, Andreas Wilke, Daniel H. Huson
2011 J jnl
Tanglegrams for rooted phylogenetic trees and networks.
Bioinform.
Céline Scornavacca, Franziska Zickmann, Daniel H. Huson
2010 J jnl
New common ancestor problems in trees and directed acyclic graphs.
Inf. Process. Lett.
Johannes Fischer, Daniel H. Huson
2010 — book
Phylogenetic Networks - Concepts, Algorithms and Applications.
Daniel H. Huson, Regula Rupp, Céline Scornavacca
2010 J jnl
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters.
Bioinform.
Leo van Iersel, Steven Kelk, Regula Rupp, Daniel H. Huson
2010 J jnl
Short clones or long clones? A simulation study on the use of paired reads in metagenomics.
BMC Bioinform.
Suparna Mitra, Max Schubach, Daniel H. Huson
2009 J jnl
Computing galled networks from real data.
Bioinform.
Daniel H. Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul
2009 J jnl
Drawing Rooted Phylogenetic Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Daniel H. Huson
2009 J jnl
Methods for comparative metagenomics.
BMC Bioinform.
Daniel H. Huson, Daniel C. Richter, Suparna Mitra, Alexander F. Auch, Stephan C. Schuster
2009 J jnl
Special Section: Phylogenetics.
IEEE ACM Trans. Comput. Biol. Bioinform.
Daniel H. Huson, Vincent Moulton, Mike A. Steel
2009 J jnl
Visual and statistical comparison of metagenomes.
Bioinform.
Suparna Mitra, Bernhard Klar, Daniel H. Huson
2008 J jnl
Improved Layout of Phylogenetic Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Philippe Gambette, Daniel H. Huson
2008 C conf
Summarizing Multiple Gene Trees Using Cluster Networks.
WABI
Daniel H. Huson, Regula Rupp
2007 B conf
Beyond Galled Trees - Decomposition and Computation of Galled Networks.
RECOMB
Daniel H. Huson, Tobias H. Klöpper
2007 J jnl
COPYCAT : cophylogenetic analysis tool.
Bioinform.
Jan P. Meier-Kolthoff, Alexander F. Auch, Daniel H. Huson, Markus Göker
2007 J jnl
Dendroscope: An interactive viewer for large phylogenetic trees.
BMC Bioinform.
Daniel H. Huson, Daniel C. Richter, Christian Rausch, Tobias Dezulian, Markus Franz, Regula Rupp
2007 J jnl
OSLay: optimal syntenic layout of unfinished assemblies.
Bioinform.
Daniel C. Richter, Stephan C. Schuster, Daniel H. Huson
2007 B conf
etagenome Analysis using Megan.
APBC
Daniel H. Huson, Alexander F. Auch, Qi Ji, Stephan C. Schuster
2006 J jnl
CrossLink: visualization and exploration of sequence relationships between (micro) RNAs.
Nucleic Acids Res.
Tobias Dezulian, Martin H. Schaefer, Roland Wiese, Detlef Weigel, Daniel H. Huson
2006 — ed.
German Conference on Bioinformatics GCB 2006, 19.09. 2006 - 22.09. 2006 in Tübingen, Germany
German Conference on Bioinformatics
Daniel H. Huson, Oliver Kohlbacher, Andrei N. Lupas, Kay Nieselt, Andreas Zell
2006 J jnl
Identification of plant microRNA homologs.
Bioinform.
Tobias Dezulian, Michael Remmert, Javier F. Palatnik, Detlef Weigel, Daniel H. Huson
2006 C conf
Reducing Distortion in Phylogenetic Networks.
WABI
Daniel H. Huson, Mike A. Steel, Jim Whitfield
2005 — ed.
Comparative Genomics, RECOMB 2005 International Workshop, RCG 2005, Dublin, Ireland, September 18-20, 2005, Proceedings
Comparative Genomics
Aoife McLysaght, Daniel H. Huson
2005 — conf
Computing recombination networks from binary sequences.
ECCB/JBI
Daniel H. Huson, Tobias H. Klöpper
2005 B conf
Reconstruction of Reticulate Networks from Gene Trees.
RECOMB
Daniel H. Huson, Tobias H. Klöpper, Peter J. Lockhart, Mike A. Steel
2005 J jnl
Whole-genome prokaryotic phylogeny.
Bioinform.
Stefan R. Henz, Daniel H. Huson, Alexander F. Auch, Kay Nieselt-Struwe, Stephan C. Schuster
2004 J jnl
Constructing Splits Graphs.
IEEE ACM Trans. Comput. Biol. Bioinform.
Andreas W. M. Dress, Daniel H. Huson
2004 J jnl
Phylogenetic Super-Networks from Partial Trees.
IEEE ACM Trans. Comput. Biol. Bioinform.
Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel
2004 C conf
Phylogenetic Super-networks from Partial Trees.
WABI
Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel
2004 J jnl
Phylogenetic trees based on gene content.
Bioinform.
Daniel H. Huson, Mike A. Steel
2004 — conf
Syntenic Layout of Two Assemblies of Related Genomes.
German Conference on Bioinformatics
Olaf Delgado-Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson
2004 J jnl
VisRD--visual recombination detection.
Bioinform.
Kristoffer Forslund, Daniel H. Huson, Vincent Moulton
2003 — conf
A meta-viewer for biomolecular data.
GI Jahrestagung (1)
Olaf Delgado-Friedrichs, Tobias Dezulian, Daniel H. Huson
2003 C conf
Distance Corrections on Recombinant Sequences.
WABI
David Bryant, Daniel H. Huson, Tobias H. Klöpper, Kay Nieselt-Struwe
2002 C conf
Segment Match Refinement and Applications.
WABI
Aaron L. Halpern, Daniel H. Huson, Knut Reinert
2002 J jnl
The greedy path-merging algorithm for contig scaffolding.
J. ACM
Daniel H. Huson, Knut Reinert, Eugene W. Myers
2001 C conf
Comparing Assemblies Using Fragments and Mate-Pairs.
WABI
Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton
2001 — conf
Design of a compartmentalized shotgun assembler for the human genome.
ISMB (Supplement of Bioinformatics)
Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers
2001 B conf
The greedy path-merging algorithm for sequence assembly.
RECOMB
Daniel H. Huson, Knut Reinert, Eugene W. Myers
2001 — conf
Visualization challenges for a new cyberpharmaceutical computing paradigm.
IEEE Symposium on Parallel and Large-Data Visualization and Graphics
Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail
2000 J jnl
4-Regular Vertex-Transitive Tilings of E
Discret. Comput. Geom.
Olaf Delgado-Friedrichs, Daniel H. Huson
2000 A conf
The Conserved Exon Method for Gene Finding.
ISMB
Vineet Bafna, Daniel H. Huson
1999 J jnl
Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction.
J. Comput. Biol.
Daniel H. Huson, Scott Nettles, Tandy J. Warnow
1999 — conf
Estimating Large Distances in Phylogenetic Reconstruction.
WAE
Daniel H. Huson, Kelly Ann Smith, Tandy J. Warnow
1999 J jnl
Hybrid Tree Reconstruction Methods.
ACM J. Exp. Algorithmics
Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy J. Warnow, Shibu Yooseph
1999 B conf
Obtaining highly accurate topology estimates of evolutionary trees from very short sequences.
RECOMB
Daniel H. Huson, Scott Nettles, Tandy J. Warnow
1999 A conf
Solving Large Scale Phylogenetic Problems using DCM2.
ISMB
Daniel H. Huson, Lisa Vawter, Tandy J. Warnow
1999 J jnl
Tiling Space by Platonic Solids, I.
Discret. Comput. Geom.
Olaf Delgado-Friedrichs, Daniel H. Huson
1998 — conf
Hybrid Tree Reconstruction Methods.
WAE
Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy J. Warnow, Shibu Yooseph
1998 J jnl
SplitsTree: analyzing and visualizing evolutionary data.
Bioinform.
Daniel H. Huson
1998 J jnl
Two Finiteness Theorems for Periodic Tilings of d-Dimensional Euclidean Space.
Discret. Comput. Geom.
Nikolai P. Dolbilin, Andreas W. M. Dress, Daniel H. Huson
1996 J jnl
Analyzing and Visualizing Sequence and Distance Data Using SplitsTree.
Discret. Appl. Math.
Andreas W. M. Dress, Daniel H. Huson, Vincent Moulton
1995 — conf
Visualization of Periodic Tilings.
VisMath
Daniel H. Huson
1992 J jnl
The Classification of Quasi-Regular Polyhedra of Genus 2.
Discret. Comput. Geom.
Reinhard Franz, Daniel H. Huson