Daniel Glez-Peña

81 papers A* 2A 1C 6Misc 15Journal 40Unranked 16

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	PIBAdb: a public cohort of multimodal colonoscopy videos and images including polyps with histological information. Comput. Methods Programs Biomed. Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Fernando Campos-Tato, Jesús Herrero, Manuel Puga, Laura Rivas, Eloy Sánchez, Águeda Iglesias, Laura Codesido, Ástrid Irene Díez-Martín, Pedro Davila-Piñón, Joaquín Cubiella, Florentino Fdez-Riverola, Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato
2025	J	`jnl`	Towards a more accurate and reliable evaluation of machine learning protein-protein interaction prediction model performance in the presence of unavoidable dataset biases. J. Integr. Bioinform. Alba Nogueira-Rodríguez, Daniel Glez-Peña, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández
2024	J	`jnl`	Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information. J. Integr. Bioinform. Daniel Glez-Peña, Hugo López-Fernández, Pedro Duque, Cristina P. Vieira, Jorge Vieira
2023	J	`jnl`	PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data. Nucleic Acids Res. María José Jiménez-Santos, Alba Nogueira-Rodríguez, Elena Piñeiro-Yáñez, Hugo López-Fernández, Santiago García-Martín, Paula Gómez-Plana, Miguel Reboiro-Jato, Gonzalo Gómez-López, Daniel Glez-Peña, Fátima Al-Shahrour
2022	J	`jnl`	Real-time polyp detection model using convolutional neural networks. Neural Comput. Appl. Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Fernando Campos-Tato, Jesús Herrero, Manuel Puga, David Remedios, Laura Rivas, Eloy Sánchez, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña
2021	J	`jnl`	Compi: a framework for portable and reproducible pipelines. PeerJ Comput. Sci. Hugo López-Fernández, Osvaldo Graña-Castro, Alba Nogueira-Rodríguez, Miguel Reboiro-Jato, Daniel Glez-Peña
2021	J	`jnl`	DREIMT: a drug repositioning database and prioritization tool for immunomodulation. Bioinform. Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López
2021	J	`jnl`	Deep Neural Networks approaches for detecting and classifying colorectal polyps. Neurocomputing Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Hugo López-Fernández, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Daniel Glez-Peña
2020	Misc	`conf`	Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines. PACBB Alba Nogueira-Rodríguez, Hugo López-Fernández, Osvaldo Graña-Castro, Miguel Reboiro-Jato, Daniel Glez-Peña
2019	—	`conf`	Deep Learning Techniques for Real Time Computer-Aided Diagnosis in Colorectal Cancer. DCAI (Special Sessions) Alba Nogueira-Rodríguez, Hugo López-Fernández, Daniel Glez-Peña
2019	Misc	`conf`	Proposal of a New Bioinformatics Pipeline for Metataxonomics in Precision Medicine. PACBB Osvaldo Graña-Castro, Hugo López-Fernández, Florentino Fdez-Riverola, Fátima Al-Shahrour, Daniel Glez-Peña
2018	J	`jnl`	Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data. Bioinform. Osvaldo Graña, Hugo López-Fernández, Florentino Fdez-Riverola, David G. Pisano, Daniel Glez-Peña
2018	J	`jnl`	Perceptions of the use of intelligent information access systems in university level active learning activities among teachers of biomedical subjects. Int. J. Medical Informatics Fernando Aparicio, Maria de la Luz Morales-Botello, Margarita Rubio, Asunción Hernando, Rafael Muñoz, Hugo López-Fernández, Daniel Glez-Peña, Florentino Fdez-Riverola, Manuel de la Villa, Manuel J. Maña López, Diego Gachet, Manuel de Buenaga Rodríguez
2018	J	`jnl`	S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data. Comput. Methods Programs Biomed. Hugo López-Fernández, Jose E. Araújo, Susana Jorge, Daniel Glez-Peña, Miguel Reboiro-Jato, Hugo Miguel Santos, Florentino Fdez-Riverola, José L. Capelo
2017	J	`jnl`	RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data. Comput. Methods Programs Biomed. Miriam Rubio-Camarillo, Hugo López-Fernández, Gonzalo Gómez-López, Angel Carro, José María Fernández, Coral Fustero Torre, Florentino Fdez-Riverola, Daniel Glez-Peña
2017	Misc	`conf`	S2P: A Desktop Application for Fast and Easy Processing of 2D-Gel and MALDI-Based Mass Spectrometry Protein Data. PACBB Hugo López-Fernández, Jose E. Araújo, Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, José Luis Capelo-Martínez
2016	J	`jnl`	A case-based reasoning system for aiding detection and classification of nosocomial infections. Decis. Support Syst. H. J. Gómez-Vallejo, Berta Uriel Latorre, M. Sande-Meijide, B. Villamarín-Bello, Reyes Pavón, Florentino Fernández Riverola, Daniel Glez-Peña
2016	J	`jnl`	LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data. J. Cheminformatics Hugo López-Fernández, Gustavo de S. Pessôa, Marco A. Z. Arruda, José Luis Capelo-Martínez, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato
2016	Misc	`conf`	RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data. PACBB Miriam Rubio-Camarillo, Hugo López-Fernández, Gonzalo Gómez-López, Angel Carro, José María Fernández, Florentino Fdez-Riverola, Daniel Glez-Peña, David G. Pisano
2015	Misc	`conf`	A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis. PACBB Osvaldo Graña, Miriam Rubio-Camarillo, Florentino Fdez-Riverola, David G. Pisano, Daniel Glez-Peña
2015	J	`jnl`	Enabling systematic, harmonised and large-scale biofilms data computation: The Biofilms Experiment Workbench. Comput. Methods Programs Biomed. Gael Pérez Rodríguez, Daniel Glez-Peña, Nuno F. Azevedo, Maria Olívia Pereira, Florentino Fdez-Riverola, Anália Lourenço
2015	J	`jnl`	Marky: A tool supporting annotation consistency in multi-user and iterative document annotation projects. Comput. Methods Programs Biomed. Martín Pérez-Pérez, Daniel Glez-Peña, Florentino Fdez-Riverola, Anália Lourenço
2015	J	`jnl`	Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery. BMC Bioinform. Hugo López-Fernández, Hugo Miguel Santos, José L. Capelo, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato
2014	J	`jnl`	A comprehensive analysis about the influence of low-level preprocessing techniques on mass spectrometry data for sample classification. Int. J. Data Min. Bioinform. Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Florentino Fernández Riverola
2014	J	`jnl`	A novel ensemble of classifiers that use biological relevant gene sets for microarray classification. Appl. Soft Comput. Miguel Reboiro-Jato, Fernando Díaz, Daniel Glez-Peña, Florentino Fdez-Riverola
2014	Misc	`conf`	BEW: Bioinformatics Workbench for Analysis of Biofilms Experimental Data. PACBB Gael Pérez Rodríguez, Daniel Glez-Peña, Nuno F. Azevedo, Maria Olívia Pereira, Florentino Fdez-Riverola, Anália Lourenço
2014	Misc	`conf`	Marky: A Lightweight Web Tracking Tool for Document Annotation. PACBB Martín Pérez-Pérez, Daniel Glez-Peña, Florentino Fdez-Riverola, Anália Lourenço
2014	J	`jnl`	Web scraping technologies in an API world. Briefings Bioinform. Daniel Glez-Peña, Anália Lourenço, Hugo López-Fernández, Miguel Reboiro-Jato, Florentino Fdez-Riverola
2013	Misc	`conf`	A Workflow for the Application of Biclustering to Mass Spectrometry Data. PACBB Hugo López-Fernández, Miguel Reboiro-Jato, Sara C. Madeira, Rubén López-Cortés, J. D. Nunes-Miranda, Hugo Miguel Santos, Florentino Fdez-Riverola, Daniel Glez-Peña
2013	J	`jnl`	BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments. Comput. Methods Programs Biomed. Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Fernando Aparicio, Diego Gachet, Manuel Buenaga, Florentino Fdez-Riverola
2013	J	`jnl`	genEnsemble: A new model for the combination of classifiers and integration of biological knowledge applied to genomic data. Expert Syst. Appl. Miguel Reboiro-Jato, Rosalía Laza, Hugo López-Fernández, Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola
2012	J	`jnl`	A JAVA application framework for scientific software development. Softw. Pract. Exp. Florentino Fdez-Riverola, Daniel Glez-Peña, Hugo López-Fernández, Miguel Reboiro-Jato, José Ramón Méndez
2012	J	`jnl`	A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets. Int. J. Data Min. Bioinform. Miguel Reboiro-Jato, Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola
2012	Misc	`conf`	Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. PACBB Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
2012	Misc	`conf`	Biological Knowledge Integration in DNA Microarray Gene Expression Classification Based on Rough Set Theory. PACBB Diego Calvo-Dmgz, Juan F. Gálvez, Daniel Glez-Peña, Florentino Fdez-Riverola
2012	J	`jnl`	Using Variable Precision Rough Set for Selection and Classification of Biological Knowledge Integrated in DNA Gene Expression. J. Integr. Bioinform. Diego Calvo-Dmgz, Juan F. Gálvez, Daniel Glez-Peña, Silvana Gómez-Meire, Florentino Fdez-Riverola
2011	Misc	`conf`	An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies. PACBB Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano, Gonzalo Gómez-López
2011	Misc	`conf`	Building Proteomics Applications with the AIBench Application Framework. PACBB Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José L. Capelo, Florentino Fdez-Riverola
2011	Misc	`conf`	Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments. PACBB Daniel Glez-Peña, Osvaldo Graña, Florentino Fdez-Riverola, David G. Pisano
2011	—	`conf`	Medical-Miner at TREC 2011 Medical Records Track. TREC Juan Manuel Córdoba, Manuel J. Maña López, Noa P. Cruz Díaz, Jacinto Mata, Fernando Aparicio, Manuel de Buenaga Rodríguez, Daniel Glez-Peña, Florentino Fdez-Riverola
2011	J	`jnl`	PileLine: a toolbox to handle genome position information in next-generation sequencing studies. BMC Bioinform. Daniel Glez-Peña, Gonzalo Gómez-López, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano
2011	J	`jnl`	PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. Nucleic Acids Res. Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
2011	J	`jnl`	Rapid development of proteomic applications with the AIBench framework. J. Integr. Bioinform. Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José Luis Capelo-Martínez, Florentino Fdez-Riverola
2011	J	`jnl`	Using inductive learning to assess compound feed production in cooperative poultry farms. Expert Syst. Appl. Miguel Reboiro-Jato, Julia Glez-Dopazo, D. Glez, Rosalía Laza, Juan F. Gálvez, Reyes Pavón, Daniel Glez-Peña, Florentino Fdez-Riverola
2010	—	`conf`	A Comparative Study of Microarray Data Classification Methods Based on Ensemble Biological Relevant Gene Sets. IWPACBB Miguel Reboiro-Jato, Daniel Glez-Peña, Juan F. Gálvez, Rosalía Laza, Fernando Díaz, Florentino Fdez-Riverola
2010	J	`jnl`	AIBench: A rapid application development framework for translational research in biomedicine. Comput. Methods Programs Biomed. Daniel Glez-Peña, Miguel Reboiro-Jato, Paulo Maia, Miguel Rocha, Fernando Díaz, Florentino Fdez-Riverola
2010	J	`jnl`	ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Res. Daniel Glez-Peña, Daniel Gómez-Blanco, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David Posada
2010	—	`conf`	An Experimental Evaluation of a Novel Stochastic Method for Iterative Class Discovery on Real Microarray Datasets. IWPACBB Héctor Gómez, Daniel Glez-Peña, Miguel Reboiro-Jato, Reyes Pavón, Fernando Díaz, Florentino Fdez-Riverola
2010	J	`jnl`	BioDR: Semantic indexing networks for biomedical document retrieval. Expert Syst. Appl. Anália Lourenço, Rafael Carreira, Daniel Glez-Peña, José Ramón Méndez, Sónia Carneiro, Luis Mateus Rocha, Fernando Díaz, Eugénio C. Ferreira, Isabel Rocha, Florentino Fdez-Riverola, Miguel Rocha
2010	C	`conf`	Incorporating biological knowledge to microarray data classification through genomic data fusion. FUSION Daniel Glez-Peña, Marta Pérez-Fernández, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Marta Pérez, Fernando Díaz
2010	J	`jnl`	Medical-Miner: Integración de conocimiento textual explícito en técnicas de minería de datos para la creación de herramientas traslacionales en medicina. Proces. del Leng. Natural Manuel de Buenaga Rodríguez, Florentino Fdez-Riverola, Manuel J. Maña López, Enrique Puertas Sanz, Daniel Glez-Peña, Jacinto Mata
2010	—	`conf`	Multi-agent System for Mass Spectrometry Analysis. PAAMS (Special Sessions and Workshops) Miguel Reboiro-Jato, Daniel Glez-Peña, Hugo Miguel Santos, Mário S. Diniz, Carlos Lodeiro, José L. Capelo, Florentino Fdez-Riverola
2010	—	`conf`	PathAgent: Multi-agent System for Updated Pathway Information Integration. PAAMS (Special Sessions and Workshops) Miguel Reboiro-Jato, Daniel Glez-Peña, Rubén Domínguez, Gonzalo Gómez-López, David G. Pisano, Celso Campos, Florentino Fdez-Riverola
2010	J	`jnl`	PathJam: a new service for integrating biological pathway information. J. Integr. Bioinform. Daniel Glez-Peña, Miguel Reboiro-Jato, Rubén Domínguez, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
2010	J	`jnl`	Resumen de Tesis: Model for explicit biological knowledge integration in DNA microarray gene expression classification. Inteligencia Artif. Daniel Glez-Peña
2009	J	`jnl`	@Note: A workbench for Biomedical Text Mining. J. Biomed. Informatics Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha
2009	Misc	`conf`	A Multi-Agent System Approach for Algorithm Parameter Tuning. PAAMS Reyes Pavón, Daniel Glez-Peña, Rosalía Laza, Fernando Díaz, María Victoria Luzón
2009	—	`conf`	An Evolutionary Approach for Sample-Based Clustering on Microarray Data. IWANN (2) Daniel Glez-Peña, Fernando Díaz, José Ramón Méndez, Juan M. Corchado, Florentino Fdez-Riverola
2009	—	`conf`	Applying Text Mining to Search for Protein Patterns. IWANN (2) Pablo Vicente Carrera, Daniel Glez-Peña, Eva Lorenzo Iglesias, Lourdes Borrajo, Reyes Pavón, Rosalía Laza, Carmen M. Redondo Marey
2009	—	`conf`	Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. IWANN (2) Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Rafael Carreira, Luis M. Rocha, Daniel Glez-Peña, José Ramón Méndez, Florentino Fdez-Riverola, Fernando Díaz, Isabel Rocha, Miguel Rocha
2009	—	`conf`	Classification of MedLine Documents Using MeSH Terms. IWANN (2) Daniel Glez-Peña, Sira López, Reyes Pavón, Rosalía Laza, Eva Lorenzo Iglesias, Lourdes Borrajo
2009	—	`conf`	Current Efforts to Integrate Biological Pathway Information. IWANN (2) Daniel Glez-Peña, Rubén Domínguez, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
2009	J	`jnl`	DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data. BMC Bioinform. Daniel Glez-Peña, Rodrigo Álvarez, Fernando Díaz, Florentino Fdez-Riverola
2009	—	`ch.`	Fuzzy Patterns and GCS Networks to Clustering Gene Expression Data. Fuzzy Systems in Bioinformatics and Computational Biology Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola, José Ramón Méndez, Juan M. Corchado
2009	J	`jnl`	Managing irrelevant knowledge in CBR models for unsolicited e-mail classification. Expert Syst. Appl. José Ramón Méndez, Daniel Glez-Peña, Florentino Fdez-Riverola, Fernando Díaz, Juan M. Corchado
2009	J	`jnl`	WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis. Nucleic Acids Res. Daniel Glez-Peña, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
2009	J	`jnl`	geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research. BMC Bioinform. Daniel Glez-Peña, Fernando Díaz, Jesús M. Hernández, Juan M. Corchado, Florentino Fdez-Riverola
2009	Misc	`conf`	geneSetFinder: A Multiagent Architecture for Gathering Biological Information. PAAMS Daniel Glez-Peña, Julia Glez-Dopazo, Reyes Pavón, Rosalía Laza, Florentino Fdez-Riverola
2008	A*	`conf`	A Comparative Impact Study of Attribute Selection Techniques on Naïve Bayes Spam Filters. ICDM José Ramón Méndez, I. Cid, Daniel Glez-Peña, Miguel Rocha, Florentino Fdez-Riverola
2008	C	`conf`	A framework for the development of Biomedical Text Mining software tools. BIBE Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha
2008	—	`conf`	Beds and Bits: The Challenge of Translational Bioinformatics. IWPACBB Daniel Glez-Peña, Pablo Vicente Carrera, Gonzalo Gómez-López, Carmen M. Redondo Marey
2008	C	`conf`	Integrating Heterogeneous Data and Applications with Distributed-AIBENCH. HIS Julia Glez-Dopazo, Daniel Glez-Peña, Florentino Fdez-Riverola
2008	—	`conf`	Multiple-Microarray Analysis and Internet Gathering Information with Application for Aiding Medical Diagnosis in Cancer Research. IWPACBB Daniel Glez-Peña, Manuel Glez Bedia, Fernando Díaz, Florentino Fernández Riverola
2008	A*	`conf`	The Impact of Noise in Spam Filtering: A Case Study. ICDM I. Cid, L. R. Janeiro, José Ramón Méndez, Daniel Glez-Peña, Florentino Fdez-Riverola
2007	A	`conf`	A platform for the selection of genes in DNA microarraydata using evolutionary algorithms. GECCO Miguel Rocha, Rui Mendes, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola
2007	—	`conf`	Analyzing the Performance of Spam Filtering Methods When Dimensionality of Input Vector Changes. MLDM José Ramón Méndez, B. Corzo, Daniel Glez-Peña, Florentino Fernández Riverola, Fernando Díaz
2007	C	`conf`	Assessing Classification Accuracy in the Revision Stage of a CBR Spam Filtering System. ICCBR José Ramón Méndez, Carlos González, Daniel Glez-Peña, Florentino Fdez-Riverola, Fernando Díaz, Juan M. Corchado
2007	—	`conf`	Developing New Services for the Automotive Industry using Matrix. WEBIST (1) Silvia Alén, Daniel Glez-Peña, Florentino Fdez-Riverola
2007	—	`conf`	Relaxing Feature Selection in Spam Filtering by Using Case-Based Reasoning Systems. EPIA Workshops José Ramón Méndez, Florentino Fdez-Riverola, Daniel Glez-Peña, Fernando Díaz, Juan M. Corchado
2006	C	`conf`	Applying GCS Networks to Fuzzy Discretized Microarray Data for Tumour Diagnosis. IDEAL Fernando Díaz, Florentino Fdez-Riverola, Daniel Glez-Peña, Juan M. Corchado
2006	C	`conf`	Using Fuzzy Patterns for Gene Selection and Data Reduction on Microarray Data. IDEAL Fernando Díaz, Florentino Fdez-Riverola, Daniel Glez-Peña, Juan M. Corchado