Daniel Gibney - RankMe

45 papers A* 2A 7B 6C 7Journal 16Unranked 7

Year	Rank	Type	Title / Venue / Authors
2025	A	`conf`	A Work-Optimal Parallel Algorithm for Aligning Sequences to Genome Graphs. IPDPS Aranya Banerjee, Daniel Gibney, Helen Xu, Srinivas Aluru
2025	J	`jnl`	Contextual Pattern Mining and Counting. CoRR Ling Li, Daniel Gibney, Sharma V. Thankachan, Solon P. Pissis, Grigorios Loukides
2025	C	`conf`	Haplotype-Aware Long-Read Error Correction. WABI Parvesh Barak, Daniel Gibney, Chirag Jain
2025	B	`conf`	Integer Programming Framework for Pangenome-Based Genome Inference. RECOMB Ghanshyam Chandra, Md. Helal Hossen, Stephan Scholz, Alexander T. Dilthey, Daniel Gibney, Chirag Jain
2025	J	`jnl`	Non-overlapping indexing in BWT-runs bounded space. Theor. Comput. Sci. Daniel Gibney, Paul Macnichol, Sharma V. Thankachan
2025	A*	`conf`	Repetition Aware Text Indexing for Matching Patterns with Wildcards. ICALP Daniel Gibney, Jackson Huffstutler, Mano Prakash Parthasarathi, Sharma V. Thankachan
2025	A	`conf`	Two-Dimensional Longest Common Extension Queries in Compact Space. STACS Arnab Ganguly, Daniel Gibney, Rahul Shah, Sharma V. Thankachan
2025	—	`conf`	Wheeler Graphs and Wheeler Languages. The Expanding World of Compressed Data Nicola Cotumaccio, Giovanna D'Agostino, Daniel Gibney, Alberto Policriti, Nicola Prezza, Sharma V. Thankachan
2024	C	`conf`	Bounded-Ratio Gapped String Indexing. SPIRE Arnab Ganguly, Daniel Gibney, Paul Macnichol, Sharma V. Thankachan
2024	J	`jnl`	GraphSlimmer: Preserving Read Mappability with the Minimum Number of Variants. J. Comput. Biol. Neda Tavakoli, Daniel Gibney, Srinivas Aluru
2024	B	`conf`	Haplotype-Aware Sequence Alignment to Pangenome Graphs. RECOMB Ghanshyam Chandra, Daniel Gibney, Chirag Jain
2024	A	`conf`	Longest Common Substring with Gaps and Related Problems. ESA Aranya Banerjee, Daniel Gibney, Sharma V. Thankachan
2024	A*	`conf`	Near-Optimal Quantum Algorithms for Bounded Edit Distance and Lempel-Ziv Factorization. SODA Daniel Gibney, Ce Jin, Tomasz Kociumaka, Sharma V. Thankachan
2024	C	`conf`	Quantum Algorithms for Longest Common Substring with a Gap. SPIRE Daniel Gibney, Md. Helal Hossen
2024	J	`jnl`	Text Indexing for Faster Gapped Pattern Matching. Algorithms Md. Helal Hossen, Daniel Gibney, Sharma V. Thankachan
2023	J	`jnl`	Compressibility-Aware Quantum Algorithms on Strings. CoRR Daniel Gibney, Sharma V. Thankachan
2023	B	`conf`	Contextual Pattern Matching in Less Space. DCC Paniz Abedin, Oliver A. Chubet, Daniel Gibney, Sharma V. Thankachan
2023	J	`jnl`	Near-Optimal Quantum Algorithms for Bounded Edit Distance and Lempel-Ziv Factorization. CoRR Daniel Gibney, Ce Jin, Tomasz Kociumaka, Sharma V. Thankachan
2023	C	`conf`	Non-overlapping Indexing in BWT-Runs Bounded Space. SPIRE Daniel Gibney, Paul Macnichol, Sharma V. Thankachan
2023	—	`conf`	On the Hardness of Wildcard Pattern Matching on de Bruijn Graphs. ICCABS Arnab Ganguly, Daniel Gibney, Arghya Kusum Das, Sharma V. Thankachan
2022	J	`jnl`	Algorithms for Colinear Chaining with Overlaps and Gap Costs. J. Comput. Biol. Chirag Jain, Daniel Gibney, Sharma V. Thankachan
2022	B	`conf`	Co-linear Chaining with Overlaps and Gap Costs. RECOMB Chirag Jain, Daniel Gibney, Sharma V. Thankachan
2022	C	`conf`	Feasibility of Flow Decomposition with Subpath Constraints in Linear Time. WABI Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru
2022	—	`conf`	Haplotype-aware variant selection for genome graphs. BCB Neda Tavakoli, Daniel Gibney, Srinivas Aluru
2022	J	`jnl`	On the Complexity of Recognizing Wheeler Graphs. Algorithmica Daniel Gibney, Sharma V. Thankachan
2022	J	`jnl`	On the Hardness of Sequence Alignment on De Bruijn Graphs. J. Comput. Biol. Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru
2022	C	`conf`	Quantum Time Complexity and Algorithms for Pattern Matching on Labeled Graphs. SPIRE Parisa Darbari, Daniel Gibney, Sharma V. Thankachan
2022	J	`jnl`	The Complexity of Approximate Pattern Matching on De Bruijn Graphs. CoRR Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru
2022	B	`conf`	The Complexity of Approximate Pattern Matching on de Bruijn Graphs. RECOMB Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru
2021	A	`conf`	Finding an Optimal Alphabet Ordering for Lyndon Factorization Is Hard. STACS Daniel Gibney, Sharma V. Thankachan
2021	J	`jnl`	I/O-optimal categorical 3-sided skyline queries. Theor. Comput. Sci. Arnab Ganguly, Daniel Gibney, Sharma V. Thankachan, Rahul Shah
2021	—	`conf`	Simple Reductions from Formula-SAT to Pattern Matching on Labeled Graphs and Subtree Isomorphism. SOSA Daniel Gibney, Gary Hoppenworth, Sharma V. Thankachan
2021	J	`jnl`	Text Indexing for Regular Expression Matching. Algorithms Daniel Gibney, Sharma V. Thankachan
2020	C	`conf`	An Efficient Elastic-Degenerate Text Index? Not Likely. SPIRE Daniel Gibney
2020	B	`conf`	FM-Index Reveals the Reverse Suffix Array. CPM Arnab Ganguly, Daniel Gibney, Sahar Hooshmand, M. Oguzhan Külekci, Sharma V. Thankachan
2020	A	`conf`	On the Complexity of BWT-Runs Minimization via Alphabet Reordering. ESA Jason W. Bentley, Daniel Gibney, Sharma V. Thankachan
2020	J	`jnl`	Quantifying Membership Inference Vulnerability via Generalization Gap and Other Model Metrics. CoRR Jason W. Bentley, Daniel Gibney, Gary Hoppenworth, Sumit Kumar Jha
2020	J	`jnl`	Simple Reductions from Formula-SAT to Pattern Matching on Labeled Graphs and Subtree Isomorphism. CoRR Daniel Gibney, Gary Hoppenworth, Sharma V. Thankachan
2020	A	`conf`	The Fine-Grained Complexity of Median and Center String Problems Under Edit Distance. ESA Gary Hoppenworth, Jason W. Bentley, Daniel Gibney, Sharma V. Thankachan
2019	—	`conf`	I/O Optimal Data Structures for Categorical Range Skyline Queries. CCCG Daniel Gibney, Sharma V. Thankachan, Arnab Ganguly, Rahul Shah
2019	J	`jnl`	On the Complexity of BWT-runs Minimization via Alphabet Reordering. CoRR Jason W. Bentley, Daniel Gibney, Sharma V. Thankachan
2019	A	`conf`	On the Hardness and Inapproximability of Recognizing Wheeler Graphs. ESA Daniel Gibney, Sharma V. Thankachan
2019	J	`jnl`	On the Hardness and Inapproximability of Recognizing Wheeler Graphs. CoRR Daniel Gibney, Sharma V. Thankachan
2018	—	`conf`	Faster Computation of Genome Mappability with one Mismatch. ICCABS Sahar Hooshmand, Paniz Abedin, Daniel Gibney, Srinivas Aluru, Sharma V. Thankachan
2018	—	`conf`	Faster Computation of Genome Mappability. BCB Sahar Hooshmand, Paniz Abedin, Daniel Gibney, Srinivas Aluru, Sharma V. Thankachan