Daniel Gautheret

19 papers C 1Journal 18
YearRankTypeTitle / Venue / Authors
2025 C conf
REINDEER2: Practical Abundance Index at Scale.
SPIRE
Yohan Hernandez-Courbevoie, Mikaël Salson, Chloé Bessière, Haoliang Xue, Daniel Gautheret, Camille Marchet, Antoine Limasset
2021 J jnl
2-kupl: mapping-free variant detection from DNA-seq data of matched samples.
BMC Bioinform.
Yunfeng Wang, Haoliang Xue, Christine Pourcel, Yang Du, Daniel Gautheret
2021 J jnl
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
Nucleic Acids Res.
Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov
2020 J jnl
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.
Bioinform.
Camille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi
2018 J jnl
A benchmark study of scoring methods for non-coding mutations.
Bioinform.
Damien Drubay, Daniel Gautheret, Stefan Michiels
2018 J jnl
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.
Nucleic Acids Res.
David Couvin, Aude Bernheim, Claire Toffano-Nioche, Marie Touchon, Juraj Michalik, Bertrand Néron, Eduardo P. C. Rocha, Gilles Vergnaud, Daniel Gautheret, Christine Pourcel
2015 J jnl
A Dual Model for Prioritizing Cancer Mutations in the Non-coding Genome Based on Germline and Somatic Events.
PLoS Comput. Biol.
Jia Li, Marie-Anne Poursat, Damien Drubay, Arnaud Motz, Zohra Saci, Antonin Morillon, Stefan Michiels, Daniel Gautheret
2012 J jnl
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms.
Adv. Bioinformatics
Julien Allali, Cédric Saule, Cédric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet
2012 J jnl
NAPP: the Nucleic Acid Phylogenetic Profile Database.
Nucleic Acids Res.
Alban Ott, Anouar Idali, Antonin Marchais, Daniel Gautheret
2008 J jnl
Entropy Measures Quantify Global Splicing Disorders in Cancer.
PLoS Comput. Biol.
William Ritchie, Samuel Granjeaud, Denis Puthier, Daniel Gautheret
2008 J jnl
Mireval: a web tool for simple microRNA prediction in genome sequences.
Bioinform.
William Ritchie, François-Xavier Théodule, Daniel Gautheret
2006 J jnl
AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.
BMC Bioinform.
Vincent Le Texier, Jean-Jack M. Riethoven, Vasudev Kumanduri, Chellappa Gopalakrishnan, Fabrice Lopez, Daniel Gautheret, Thangavel Alphonse Thanaraj
2006 J jnl
Differential Repression of Alternative Transcripts: A Screen for miRNA Targets.
PLoS Comput. Biol.
Matthieu Legendre, William Ritchie, Fabrice Lopez, Daniel Gautheret
2005 J jnl
Computing expectation values for RNA motifs using discrete convolutions.
BMC Bioinform.
André Lambert, Matthieu Legendre, Jean-Fred Fontaine, Daniel Gautheret
2005 J jnl
Profile-based detection of microRNA precursors in animal genomes.
Bioinform.
Matthieu Legendre, André Lambert, Daniel Gautheret
2004 J jnl
The ERPIN server: an interface to profile-based RNA motif identification.
Nucleic Acids Res.
André Lambert, Jean-Fred Fontaine, Matthieu Legendre, Fabrice Leclerc, Emmanuelle Permal, François Major, Harald Putzer, Olivier Delfour, Bernard Michot, Daniel Gautheret
1994 J jnl
An RNA pattern matching program with enhanced performance and portability.
Comput. Appl. Biosci.
A. Laferriere, Daniel Gautheret, Robert Cedergren
1990 J jnl
Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA.
Comput. Appl. Biosci.
Daniel Gautheret, François Major, Robert Cedergren
1988 J jnl
A secondary and tertiary structure editor for nucleic acids.
Comput. Appl. Biosci.
Robert Cedergren, Daniel Gautheret, Guy Lapalme, François Major