Daniel Doerr

25 papers B 2C 4Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2025 C conf
Human Readable Compression of GFA Paths Using Grammar-Based Code.
WABI
Peter Heringer, Daniel Doerr
2025 J jnl
Reconstructing rearrangement phylogenies of natural genomes.
Algorithms Mol. Biol.
Leonard Bohnenkämper, Jens Stoye, Daniel Doerr
2024 J jnl
Panacus: fast and exact pangenome growth and core size estimation.
Bioinform.
Luca Parmigiani, Erik Garrison, Jens Stoye, Tobias Marschall, Daniel Doerr
2023 J jnl
Algorithms for the genome median under a restricted measure of rearrangement.
RAIRO Oper. Res.
Helmuth O. M. Silva, Diego P. Rubert, Eloi Araujo, Eckhard Steffen, Daniel Doerr, Fábio Viduani Martinez
2023 J jnl
Constructing founder sets under allelic and non-allelic homologous recombination.
Algorithms Mol. Biol.
Konstantinn Bonnet, Tobias Marschall, Daniel Doerr
2023 J jnl
Correction: Constructing founder sets under allelic and non-allelic homologous recombination.
Algorithms Mol. Biol.
Konstantinn Bonnet, Tobias Marschall, Daniel Doerr
2023 J jnl
Fast computation of approximate weak common intervals in multiple indeterminate strings.
CoRR
Daniel Doerr, Bernard M. E. Moret
2022 C conf
Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination.
WABI
Konstantinn Bonnet, Tobias Marschall, Daniel Doerr
2021 J jnl
Computing the Rearrangement Distance of Natural Genomes.
J. Comput. Biol.
Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye
2021 J jnl
Small Parsimony for Natural Genomes in the DCJ-Indel Model.
CoRR
Daniel Doerr, Cédric Chauve
2021 J jnl
Small parsimony for natural genomes in the DCJ-indel model.
J. Bioinform. Comput. Biol.
Daniel Doerr, Cédric Chauve
2021 J jnl
The potential of family-free rearrangements towards gene orthology inference.
J. Bioinform. Comput. Biol.
Diego P. Rubert, Daniel Doerr, Marília D. V. Braga
2020 B conf
Computing the Rearrangement Distance of Natural Genomes.
RECOMB
Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye
2020 J jnl
Computing the rearrangement distance of natural genomes.
CoRR
Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye
2017 — conf
Finding Teams in Graphs and Its Application to Spatial Gene Cluster Discovery.
RECOMB-CG
Tizian Schulz, Jens Stoye, Daniel Doerr
2017 J jnl
New Genome Similarity Measures based on Conserved Gene Adjacencies.
J. Comput. Biol.
Daniel Doerr, Luis Antonio Brasil Kowada, Eloi Araujo, Shachi Deshpande, Simone Dantas, Bernard M. E. Moret, Jens Stoye
2017 J jnl
The gene family-free median of three.
Algorithms Mol. Biol.
Daniel Doerr, Metin Balaban, Pedro Feijão, Cédric Chauve
2016 B conf
New Genome Similarity Measures Based on Conserved Gene Adjacencies.
RECOMB
Luis Antonio Brasil Kowada, Daniel Doerr, Simone Dantas, Jens Stoye
2016 C conf
The Gene Family-Free Median of Three.
WABI
Daniel Doerr, Pedro Feijão, Metin Balaban, Cédric Chauve
2016 J jnl
The gene family-free median of three.
CoRR
Daniel Doerr, Pedro Feijão, Metin Balaban, Cédric Chauve
2013 — ch.
The Potential of Family-Free Genome Comparison.
Models and Algorithms for Genome Evolution
Marília D. V. Braga, Cédric Chauve, Daniel Doerr, Katharina Jahn, Jens Stoye, Annelyse Thévenin, Roland Wittler
2012 — conf
Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains.
HealthGIS
Daniel Doerr, Kun Hu, Sondra R. Renly, Stefan Edlund, Matthew A. Davis, James H. Kaufman, Justin Lessler, Matthias Filter, Annemarie Käsbohrer, Bernd Appel
2012 J jnl
Gene family assignment-free comparative genomics.
BMC Bioinform.
Daniel Doerr, Annelyse Thévenin, Jens Stoye
2012 J jnl
Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions.
Algorithms Mol. Biol.
Daniel Doerr, Ilan Gronau, Shlomo Moran, Irad Yavneh
2011 C conf
Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions - (Extended Abstract).
WABI
Daniel Doerr, Ilan Gronau, Shlomo Moran, Irad Yavneh