Daniel A. Beard

19 papers Misc 1Journal 18
YearRankTypeTitle / Venue / Authors
2025 J jnl
Identification of digital twins to guide interpretable AI for diagnosis and prognosis in heart failure.
npj Digit. Medicine
Feng Gu, Andrew J. Meyer, Filip Jezek, Shuangdi Zhang, Tonimarie Catalan, Alexandria Miller, Noah A. Schenk, Victoria E. Sturgess, Domingo Uceda, Rui Li, Emily Wittrup, Xinwei Hua, Brian E. Carlson, Yi-Da Tang, Farhan Raza, Kayvan Najarian, Scott L. Hummel, Daniel A. Beard
2021 J jnl
Hypoxic pulmonary vasoconstriction as a regulator of alveolar-capillary oxygen flux: A computational model of ventilation-perfusion matching.
PLoS Comput. Biol.
Andrew D. Marquis, Filip Jezek, David J. Pinsky, Daniel A. Beard
2018 J jnl
Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats.
PLoS Comput. Biol.
Michael A. Moxley, Kalyan C. Vinnakota, Jason N. Bazil, Nathan R. Qi, Daniel A. Beard
2017 J jnl
The feasibility of genome-scale biological network inference using Graphics Processing Units.
Algorithms Mol. Biol.
Raghuram Thiagarajan, Amir Alavi, Jagdeep T. Podichetty, Jason N. Bazil, Daniel A. Beard
2014 J jnl
Arterial Stiffening Provides Sufficient Explanation for Primary Hypertension.
PLoS Comput. Biol.
Klas H. Pettersen, Scott M. Bugenhagen, Javaid Nauman, Daniel A. Beard, Stig W. Omholt
2012 Misc conf
Making Computational Models Accessible through Ontologies and Visualization Tools.
AMIA
Nazanin Tabesh-Saleki, Mary Shimoyama, Brian E. Carlson, Christopher T. Thompson, Daniel A. Beard
2011 J jnl
A database of thermodynamic properties of the reactions of glycolysis, the tricarboxylic acid cycle, and the pentose phosphate pathway.
Database J. Biol. Databases Curation
Xin Li, Fan Wu, Feng Qi, Daniel A. Beard
2011 J jnl
Minimum Information About a Simulation Experiment (MIASE).
PLoS Comput. Biol.
Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère
2009 J jnl
An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model.
J. Comput. Phys.
Dexuan Xie, Ranjan K. Dash, Daniel A. Beard
2009 J jnl
BISEN: Biochemical Simulation Environment.
Bioinform.
Joep Vanlier, Fan Wu, Feng Qi, Kalyan C. Vinnakota, Yu Han, Ranjan K. Dash, F. Yang, Daniel A. Beard
2009 J jnl
Generating rate equations for complex enzyme systems by a computer-assisted systematic method.
BMC Bioinform.
Feng Qi, Ranjan K. Dash, Yu Han, Daniel A. Beard
2009 J jnl
Roles of the creatine kinase system and myoglobin in maintaining energetic state in the working heart.
BMC Syst. Biol.
Fan Wu, Daniel A. Beard
2009 J jnl
Strong Inference for Systems Biology.
PLoS Comput. Biol.
Daniel A. Beard, Martin J. Kushmerick
2008 J jnl
Linear analysis near a steady-state of biochemical networks: control analysis, correlation metrics and circuit theory.
BMC Syst. Biol.
William J. Heuett, Daniel A. Beard, Hong Qian
2006 J jnl
Correction: A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation.
PLoS Comput. Biol.
Daniel A. Beard
2006 J jnl
Modeling of Oxygen Transport and Cellular Energetics Explains Observations on In Vivo Cardiac Energy Metabolism.
PLoS Comput. Biol.
Daniel A. Beard
2005 J jnl
A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation.
PLoS Comput. Biol.
Daniel A. Beard
2003 J jnl
Constructing irregular surfaces to enclose macromolecular complexes for mesoscale modeling using the discrete surface charge optimization (DISCO) algorithm.
J. Comput. Chem.
Qing Zhang, Daniel A. Beard, Tamar Schlick
2000 J jnl
Computational challenges in simulating large DNA over long times.
Comput. Sci. Eng.
Tamar Schlick, Daniel A. Beard, Jing Huang, Daniel Strahs, Xiaoliang Qian