Dana H. Brooks

162 papers A 4B 2Misc 7Journal 57Unranked 92

Year	Rank	Type	Title / Venue / Authors
2023	A	`conf`	AlignGraph: A Group of Generative Models for Graphs. SDM Kimia Shayestehfard, Dana H. Brooks, Stratis Ioannidis
2023	J	`jnl`	AlignGraph: A Group of Generative Models for Graphs. CoRR Kimia Shayestehfard, Dana H. Brooks, Stratis Ioannidis
2023	J	`jnl`	UncertainSCI: A Python Package for Noninvasive Parametric Uncertainty Quantification of Simulation Pipelines. J. Open Source Softw. Jess D. Tate, Zexin Liu, Jake A. Bergquist, Sumientra Rampersad, Dan White, Chantel Charlebois, Lindsay C. Rupp, Dana H. Brooks, Rob S. MacLeod, Akil Narayan
2023	J	`jnl`	UncertainSCI: Uncertainty quantification for computational models in biomedicine and bioengineering. Comput. Biol. Medicine Akil Narayan, Zexin Liu, Jake A. Bergquist, Chantel Charlebois, Sumientra Rampersad, Lindsay C. Rupp, Dana H. Brooks, Dan White, Jess D. Tate, Rob S. MacLeod
2022	—	`conf`	Effect of Segmentation Uncertainty on the ECGI Inverse Problem Solution and Source Localization. CinC Narimane Gassa, Machteld J. Boonstra, Beata Ondrusova, Jana Svehlíková, Dana H. Brooks, Akil Narayan, Ali S. Rababah, Peter M. van Dam, Rob S. MacLeod, Jess D. Tate, Nejib Zemzemi
2022	—	`conf`	Heart Position Uncertainty Quantification in the Inverse Problem of ECGI. CinC Jake A. Bergquist, Lindsay C. Rupp, Anna Busatto, Ben Orkild, Brian Zenger, Wilson Good, Jaume Coll-Font, Akil Narayan, Jess D. Tate, Dana H. Brooks, Rob S. MacLeod
2022	J	`jnl`	Reconstruction of cardiac position using body surface potentials. Comput. Biol. Medicine Jake A. Bergquist, Jaume Coll-Font, Brian Zenger, Lindsay C. Rupp, Wilson W. Good, Dana H. Brooks, Rob S. MacLeod
2022	J	`jnl`	Reducing Line-of-Block Artifacts in Cardiac Activation Maps Estimated Using ECG Imaging: A Comparison of Source Models and Estimation Methods. IEEE Trans. Biomed. Eng. Steffen Schuler, Matthias Schaufelberger, Laura R. Bear, Jake A. Bergquist, Matthijs J. M. Cluitmans, Jaume Coll-Font, Önder Nazim Onak, Brian Zenger, Axel Loewe, Rob S. MacLeod, Dana H. Brooks, Olaf Dössel
2022	—	`conf`	Segmentation Uncertainty Quantification in Cardiac Propagation Models. CinC Jess D. Tate, Nejib Zemzemi, Shireen Y. Elhabian, Beáta Ondrusová, Machteld J. Boonstra, Peter M. van Dam, Akil Narayan, Dana H. Brooks, Rob S. MacLeod
2022	—	`conf`	The Effect of Segmentation Variability in Forward ECG Simulation. CinC Beata Ondrusova, Machteld J. Boonstra, Jana Svehlíková, Dana H. Brooks, Peter M. van Dam, Ali S. Rababah, Akil Narayan, Rob S. MacLeod, Nejib Zemzemi, Jess D. Tate
2021	—	`conf`	A Cardiac Shape Model for Segmentation Uncertainty Quantification. CinC Jess D. Tate, Shireen Y. Elhabian, Nejib Zemzemi, Wilson W. Good, Peter M. van Dam, Dana H. Brooks, Rob S. MacLeod
2021	—	`conf`	Deep Adaptive Electrocardiographic Imaging with Generative Forward Model for Error Reduction. FIMH Maryam Toloubidokhti, Prashnna K. Gyawali, Omar A. Gharbia, Xiajun Jiang, Jaume Coll-Font, Jake A. Bergquist, Brian Zenger, Wilson W. Good, Dana H. Brooks, Rob S. MacLeod, Linwei Wang
2021	A	`conf`	Faster & More Reliable Tuning of Neural Networks: Bayesian Optimization with Importance Sampling. AISTATS Setareh Ariafar, Zelda Mariet, Dana H. Brooks, Jennifer G. Dy, Jasper Snoek
2021	A	`conf`	Rate-Regularization and Generalization in Variational Autoencoders. AISTATS Alican Bozkurt, Babak Esmaeili, Jean-Baptiste Tristan, Dana H. Brooks, Jennifer G. Dy, Jan-Willem van de Meent
2021	—	`conf`	Relationship Between Cardiac Isochrones and its Mean Anatomical Position in the Heart: The CineECG. CinC Machteld J. Boonstra, Dana H. Brooks, Peter Loh, Peter M. van Dam
2021	J	`jnl`	Segmentation of cellular patterns in confocal images of melanocytic lesions in vivo via a multiscale encoder-decoder network (MED-Net). Medical Image Anal. Kivanç Köse, Alican Bozkurt, Christi Alessi-Fox, Melissa Gill, Caterina Longo, Giovanni Pellacani, Jennifer G. Dy, Dana H. Brooks, Milind Rajadhyaksha
2021	—	`conf`	Simultaneous Multi-heartbeat ECGI Solution with a Time-Varying Forward Model: A Joint Inverse Formulation. FIMH Jake A. Bergquist, Jaume Coll-Font, Brian Zenger, Lindsay C. Rupp, Wilson W. Good, Dana H. Brooks, Rob S. MacLeod
2021	—	`conf`	Uncertainty Quantification of the Effects of Segmentation Variability in ECGI. FIMH Jess D. Tate, Wilson W. Good, Nejib Zemzemi, Machteld J. Boonstra, Peter M. van Dam, Dana H. Brooks, Akil Narayan, Rob S. MacLeod
2021	J	`jnl`	Unsupervised Approaches for Out-Of-Distribution Dermoscopic Lesion Detection. CoRR Max Torop, Sandesh Ghimire, WenQian Liu, Dana H. Brooks, Octavia I. Camps, Milind Rajadhyaksha, Jennifer G. Dy, Kivanç Köse
2021	—	`conf`	Variation is the Norm: Brain State Dynamics Evoked By Emotional Video Clips. EMBC Ashutosh Singh, Christiana Westlin, Hedwig Eisenbarth, Elizabeth A. Reynolds Losin, Jessica R. Andrews-Hanna, Tor D. Wager, Ajay B. Satpute, Lisa Feldman Barrett, Dana H. Brooks, Deniz Erdogmus
2021	J	`jnl`	Variation is the Norm: Brain State Dynamics Evoked By Emotional Video Clips. CoRR Ashutosh Singh, Christiana Westlin, Hedwig Eisenbarth, Elizabeth A. Reynolds Losin, Jessica R. Andrews-Hanna, Tor D. Wager, Ajay B. Satpute, Lisa Feldman Barrett, Dana H. Brooks, Deniz Erdogmus
2020	—	`conf`	A Muscle Synergy Framework for Cross-Limb Reconstruction of Hand Muscle Activity Distal to a Virtual Wrist-Level Disarticulation. EMBC Spencer Lake Jacobs-Skolik, Don Liang, Dana H. Brooks, Deniz Erdogmus, Mathew Yarossi, Eugene Tunik
2020	J	`jnl`	Characterizing the transient electrocardiographic signature of ischemic stress using Laplacian Eigenmaps for dimensionality reduction. Comput. Biol. Medicine Wilson W. Good, Burak Erem, Brian Zenger, Jaume Coll-Font, Jake A. Bergquist, Dana H. Brooks, Rob S. MacLeod
2020	—	`conf`	Improving Localization of Cardiac Geometry Using ECGI. CinC Jake A. Bergquist, Jaume Coll-Font, Brian Zenger, Lindsay C. Rupp, Wilson W. Good, Dana H. Brooks, Rob S. MacLeod
2020	J	`jnl`	Mapping Motor Cortex Stimulation to Muscle Responses: A Deep Neural Network Modeling Approach. CoRR Md Navid Akbar, Mathew Yarossi, Marc Martinez-Gost, Marc A. Sommer, Moritz Dannhauer, Sumientra Rampersad, Dana H. Brooks, Eugene Tunik, Deniz Erdogmus
2020	—	`conf`	Mapping motor cortex stimulation to muscle responses: a deep neural network modeling approach. PETRA Md Navid Akbar, Mathew Yarossi, Marc Martinez-Gost, Marc A. Sommer, Moritz Dannhauer, Sumientra Rampersad, Dana H. Brooks, Eugene Tunik, Deniz Erdogmus
2020	—	`conf`	Motor cortex mapping using active gaussian processes. PETRA Razieh Faghihpirayesh, Tales Imbiriba, Mathew Yarossi, Eugene Tunik, Dana H. Brooks, Deniz Erdogmus
2020	J	`jnl`	Segmentation of Cellular Patterns in Confocal Images of Melanocytic Lesions in vivo via a Multiscale Encoder-Decoder Network (MED-Net). CoRR Kivanç Köse, Alican Bozkurt, Christi Alessi-Fox, Melissa Gill, Caterina Longo, Giovanni Pellacani, Jennifer G. Dy, Dana H. Brooks, Milind Rajadhyaksha
2020	—	`conf`	Shape Analysis of Segmentation Variability. CinC Jess D. Tate, Nejib Zemzemi, Wilson W. Good, Peter M. van Dam, Dana H. Brooks, Rob S. MacLeod
2020	—	`conf`	Using UncertainSCI to Quantify Uncertainty in Cardiac Simulations. CinC Lindsay C. Rupp, Zexin Liu, Jake A. Bergquist, Sumientra Rampersad, Dan White, Jess D. Tate, Dana H. Brooks, Akil Narayan, Rob S. MacLeod
2020	J	`jnl`	Weighting Is Worth the Wait: Bayesian Optimization with Importance Sampling. CoRR Setareh Ariafar, Zelda Mariet, Ehsan Elhamifar, Dana H. Brooks, Jennifer G. Dy, Jasper Snoek
2019	J	`jnl`	A Proximal Operator for Multispectral Phase Retrieval Problems. SIAM J. Optim. Biel Roig-Solvas, Lee Makowski, Dana H. Brooks
2019	J	`jnl`	ADMMBO: Bayesian Optimization with Unknown Constraints using ADMM. J. Mach. Learn. Res. Setareh Ariafar, Jaume Coll-Font, Dana H. Brooks, Jennifer G. Dy
2019	—	`conf`	An experimental and computational framework for modeling multi-muscle responses to transcranial magnetic stimulation of the human motor cortex. NER Mathew Yarossi, Fernando Quivira, Moritz Dannhauer, Marc A. Sommer, Dana H. Brooks, Deniz Erdogmus, Eugene Tunik
2019	—	`conf`	Comparison of Activation Times Estimation for Potential-Based ECG Imaging. CinC Matthias Schaufelberger, Steffen Schuler, Laura Bear, Matthijs J. M. Cluitmans, Jaume Coll-Font, Önder Nazim Onak, Olaf Dössel, Dana H. Brooks
2019	J	`jnl`	Evaluating Combinatorial Generalization in Variational Autoencoders. CoRR Alican Bozkurt, Babak Esmaeili, Dana H. Brooks, Jennifer G. Dy, Jan-Willem van de Meent
2019	J	`jnl`	Prospects for transcranial temporal interference stimulation in humans: A computational study. NeuroImage Sumientra Rampersad, Biel Roig-Solvas, Mathew Yarossi, Praveen P. Kulkarni, Emiliano Santarnecchi, Alan D. Dorval, Dana H. Brooks
2019	—	`conf`	Removing TMS Artifacts from EEG Recordings Using a Deep Gated Recurrent Unit. NER Andac Demir, Mathew Yarossi, Damon Hyde, Mouhsin Shafi, Dana H. Brooks, Deniz Erdogmus
2019	A	`conf`	Structured Disentangled Representations. AISTATS Babak Esmaeili, Hao Wu, Sarthak Jain, Alican Bozkurt, N. Siddharth, Brooks Paige, Dana H. Brooks, Jennifer G. Dy, Jan-Willem van de Meent
2019	—	`conf`	Transfer learning using low-dimensional subspaces for EMG-based classification of hand posture. NER Sezen Yagmur Günay, Mathew Yarossi, Dana H. Brooks, Eugene Tunik, Deniz Erdogmus
2018	—	`conf`	A Common-Ground Review of the Potential for Machine Learning Approaches in Electrocardiographic Imaging Based on Probabilistic Graphical Models. CinC Jaume Coll-Font, Linwei Wang, Dana H. Brooks
2018	—	`conf`	A Multiresolution Convolutional Neural Network with Partial Label Training for Annotating Reflectance Confocal Microscopy Images of Skin. MICCAI (2) Alican Bozkurt, Kivanç Köse, Christi Alessi-Fox, Melissa Gill, Jennifer G. Dy, Dana H. Brooks, Milind Rajadhyaksha
2018	J	`jnl`	A Multiresolution Deep Learning Framework for Automated Annotation of Reflectance Confocal Microscopy Images. CoRR Kivanç Köse, Alican Bozkurt, Christi Alessi-Fox, Melissa Gill, Dana H. Brooks, Jennifer G. Dy, Milind Rajadhyaksha
2018	J	`jnl`	A Potential-Based Inverse Spectral Method to Noninvasively Localize Discordant Distributions of Alternans on the Heart From the ECG. IEEE Trans. Biomed. Eng. Jaume Coll-Font, Burak Erem, Dana H. Brooks
2018	J	`jnl`	Can VAEs Generate Novel Examples? CoRR Alican Bozkurt, Babak Esmaeili, Dana H. Brooks, Jennifer G. Dy, Jan-Willem van de Meent
2018	J	`jnl`	Computationally optimized ECoG stimulation with local safety constraints. NeuroImage Seyhmus Guler, Moritz Dannhauer, Biel Roig-Solvas, Alexis Gkogkidis, Robert S. MacLeod, Tonio Ball, Jeffrey G. Ojemann, Dana H. Brooks
2018	J	`jnl`	Dirichlet Priors for MAP Inference of Protein Conformation Abundances from SAXS. J. Signal Process. Syst. A. Emre Onuk, Murat Akçakaya, Jaydeep P. Bardhan, Deniz Erdogmus, Dana H. Brooks, Lee Makowski
2018	—	`conf`	Effect of Segmentation Variation on ECG Imaging. CinC Jess D. Tate, Nejib Zemzemi, Wilson Good, Peter M. van Dam, Dana H. Brooks, Rob S. MacLeod
2018	—	`conf`	Novel Metric Using Laplacian Eigenmaps to Evaluate Ischemic Stress on the Torso Surface. CinC Wilson Good, Burak Erem, Jaume Coll-Font, Brian Zenger, Dana H. Brooks, Rob S. MacLeod, Milan Horacek
2017	J	`jnl`	A Marked Poisson Process Driven Latent Shape Model for 3D Segmentation of Reflectance Confocal Microscopy Image Stacks of Human Skin. IEEE Trans. Image Process. Sindhu Ghanta, Michael I. Jordan, Kivanç Köse, Dana H. Brooks, Milind Rajadhyaksha, Jennifer G. Dy
2017	—	`conf`	Analyzing Source Sampling to Reduce Error in ECG Forward Simulations. CinC Jess D. Tate, Karli Gillette, Brett M. Burton, Wilson Good, Jaume Coll-Font, Dana H. Brooks, Rob S. MacLeod
2017	J	`jnl`	Delineation of Skin Strata in Reflectance Confocal Microscopy Images using Recurrent Convolutional Networks with Toeplitz Attention. CoRR Alican Bozkurt, Kivanç Köse, Jaume Coll-Font, Christi Alessi-Fox, Dana H. Brooks, Jennifer G. Dy, Milind Rajadhyaksha
2017	—	`conf`	Delineation of Skin Strata in Reflectance Confocal Microscopy Images with Recurrent Convolutional Networks. CVPR Workshops Alican Bozkurt, Trevor Gale, Kivanç Köse, Christi Alessi-Fox, Dana H. Brooks, Milind Rajadhyaksha, Jennifer G. Dy
2017	—	`conf`	Detecting Ischemic Stress to the Myocardium Using Laplacian Eigenmaps and Changes to Conduction Velocity. CinC Wilson Good, Burak Erem, Jaume Coll-Font, Dana H. Brooks, Rob S. MacLeod
2017	—	`conf`	ECG-Based Reconstruction of Heart Position and Orientation with Bayesian Optimization. CinC Jaume Coll-Font, Dana H. Brooks
2017	—	`conf`	Overcoming Barriers to Quantification and Comparison of Electrocardiographic Imaging Methods: a Community-Based Approach. CinC Jwala Dhamala, Jaume Coll-Font, Jess D. Tate, María de la Salud Guillem Sánchez, Dana H. Brooks, Linwei Wang, Rob S. MacLeod, Sandesh Ghimire
2016	—	`conf`	A framework to optimize protein structure from solution scattering using ADMM and an elastic subdomain network. ISBI Biel Roig-Solvas, Jaydeep P. Bardhan, Deniz Erdogmus, Dana H. Brooks, Lee Makowski
2016	—	`conf`	Evaluation of numerical techniques for solving the current injection problem in biological tissues. ISBI Damon E. Hyde, Moritz Dannhauer, Simon K. Warfield, Rob S. MacLeod, Dana H. Brooks
2016	—	`conf`	Novel Biomarker for Evaluating Ischemic Stress Using an Electrogram Derived Phase Space. CinC Wilson Good, Burak Erem, Jaume Coll-Font, Dana H. Brooks, Rob S. MacLeod
2016	—	`conf`	Optimizing stimulus patterns for dense array TDCS with fewer sources than electrodes using a branch and bound algorithm. ISBI Seyhmus Guler, Moritz Dannhauer, Burak Erem, Robert S. MacLeod, Don M. Tucker, Sergei Turovets, Phan Luu, Waleed Meleis, Dana H. Brooks
2016	—	`conf`	Spatiotemporal Activation Time Estimation Improves Noninvasive Localization of Cardiac Electrical Activity. CinC Matthijs J. M. Cluitmans, Jaume Coll-Font, Burak Erem, Dana H. Brooks, Pietro Bonizzi, Joël M. H. Karel, Paul G. A. Volders, Ralf Peeters, Ronald L. Westra
2016	—	`conf`	The Consortium on Electrocardiographic Imaging. CinC Jaume Coll-Font, Dana H. Brooks, Peter M. van Dam, Jwala Dhamala, Olaf Dössel, María de la Salud Guillem Sánchez, Rob S. MacLeod, Danila Potyagaylo, Walther H. W. Schulze, Jess D. Tate, Linwei Wang
2015	—	`conf`	A sparse nonnegative demixing algorithm with intrinsic regularization for multiplexed fluorescence tomography. ISBI Vivian Pera, Dana H. Brooks, Mark Niedre
2015	—	`conf`	A statistical approach to incorporate multiple ECG or EEG recordings with artifactual variability into inverse solutions. ISBI Jaume Coll-Font, Burak Erem, Petr Stovícek, Dana H. Brooks
2015	—	`conf`	Combined delay and graph embedding of epileptic discharges in EEG reveals complex and recurrent nonlinear dynamics. ISBI Burak Erem, Damon Hyde, Jurriaan M. Peters, Frank H. Duffy, Dana H. Brooks, Simon K. Warfield
2015	—	`conf`	Comparison of Temporal Dimensionality Reduction Methods for Constrained Inverse in Cardiac Electrical Imaging. CinC Jaume Coll-Font, Danila Potyagaylo, Walther H. W. Schulze, Olaf Dössel, Dana H. Brooks
2015	J	`jnl`	Constrained Maximum Likelihood Estimation of Relative Abundances of Protein Conformation in a Heterogeneous Mixture From Small Angle X-Ray Scattering Intensity Measurements. IEEE Trans. Signal Process. A. Emre Onuk, Murat Akçakaya, Jaydeep P. Bardhan, Deniz Erdogmus, Dana H. Brooks, Lee Makowski
2015	—	`conf`	Evaluation of 2-norm versus Sparsity Regularization in Spline-Based Joint Reconstruction of Epicardial and Endocardial Potentials from Body-Surface Measurements. CinC Jaume Coll-Font, Brittany Purcell, Jingjia Xu, Petr Stovícek, Dana H. Brooks, Linwei Wang
2015	—	`conf`	Maximum a posteriori estimation of relative abundances of protein conformations. MLSP A. Emre Onuk, Murat Akçakaya, Jaydeep P. Bardhan, Deniz Erdogmus, Dana H. Brooks, Lee Makowski
2015	—	`conf`	Quantitative Comparison of Two Cardiac Electrical Imaging Methods to Localize Pacing Sites. CinC Jaume Coll-Font, Petr Stovícek, Dana H. Brooks, Peter M. van Dam
2014	J	`jnl`	Accelerated Learning-Based Interactive Image Segmentation Using Pairwise Constraints. IEEE Trans. Image Process. Jamshid Sourati, Deniz Erdogmus, Jennifer G. Dy, Dana H. Brooks
2014	J	`jnl`	Identifying Model Inaccuracies and Solution Uncertainties in Noninvasive Activation-Based Imaging of Cardiac Excitation Using Convex Relaxation. IEEE Trans. Medical Imaging Burak Erem, Peter M. van Dam, Dana H. Brooks
2014	—	`conf`	New Additions to the Toolkit for Forward/Inverse Problems in Electrocardiography within the SCIRun Problem Solving Environment. CinC Jaume Coll-Font, Brett M. Burton, Jess D. Tate, Burak Erem, Darrell J. Swenson, Dafang Wang, Dana H. Brooks, Peter M. van Dam, Rob S. MacLeod
2014	J	`jnl`	Using Transmural Regularization and Dynamic Modeling for Noninvasive Cardiac Potential Imaging of Endocardial Pacing With Imprecise Thoracic Geometry. IEEE Trans. Medical Imaging Burak Erem, Jaume Coll-Font, Ramon Martinez Orellana, Petr Stovícek, Dana H. Brooks
2014	—	`conf`	Using a new Time-Independent Average Method for Non-Invasive Cardiac Potential Imaging of Endocardial Pacing with Imprecise Thorax Geometry. CinC Jaume Coll-Font, Burak Erem, Petr Stovícek, Dana H. Brooks
2014	Misc	`conf`	Utilization of temporal trial dependency in ERP based BCIs. ACSSC Umut Orhan, Delia Fernandez-Canellas, Murat Akçakaya, Dana H. Brooks, Deniz Erdogmus
2014	J	`jnl`	Visualizing simulated electrical fields from electroencephalography and transcranial electric brain stimulation: A comparative evaluation. NeuroImage Sebastian Eichelbaum, Moritz Dannhauer, Mario Hlawitschka, Dana H. Brooks, Thomas R. Knösche, Gerik Scheuermann
2013	—	`conf`	An Inverse Spectral Method to Localize Discordant Alternans Regions on the Heart from Body Surface Measurements. FIMH Jaume Coll-Font, Burak Erem, Alain Karma, Dana H. Brooks
2013	J	`jnl`	Guest Editorial Special Issue on Medical Imaging and Image Computing in Computational Physiology. IEEE Trans. Medical Imaging Alejandro F. Frangi, Rod D. Hose, Peter J. Hunter, Nicholas Ayache, Dana H. Brooks
2013	Misc	`conf`	Time invariant multi electrode averaging for biomedical signals. ICASSP Ramon Martinez Orellana, Burak Erem, Dana H. Brooks
2013	—	`conf`	Uncertainty Visualization in Forward and Inverse Cardiac Models. CinC Brett M. Burton, Burak Erem, Kristin Potter, Paul Rosen, Chris R. Johnson, Dana H. Brooks, Rob S. MacLeod
2012	—	`conf`	A pipeline for the simulation of transcranial direct current stimulation for realistic human head models using SCIRun/BioMesh3D. EMBC Moritz Dannhauer, Dana H. Brooks, Don M. Tucker, Robert S. MacLeod
2012	—	`conf`	Axon segmentation in microscopy images - A graphical model based approach. ISBI F. Noushin Golabchi, Dana H. Brooks
2012	—	`conf`	Constrained spectral clustering for image segmentation. MLSP Jamshid Sourati, Dana H. Brooks, Jennifer G. Dy, Deniz Erdogmus
2012	—	`conf`	Manifold learning for analysis of low-order nonlinear dynamics in high-dimensional electrocardiographic signals. ISBI Burak Erem, Petr Stovícek, Dana H. Brooks
2012	Misc	`conf`	Unsupervised wrinkle detection in reflectance confocal microscopy images of the human skin. ICASSP Jamshid Sourati, Dana H. Brooks, Jennifer G. Dy, Esra Ataer Cansizoglu, Deniz Erdogmus, Milind Rajadhyaksha
2011	—	`conf`	A toolkit for forward/inverse problems in electrocardiography within the SCIRun problem solving environment. EMBC Brett M. Burton, Jess D. Tate, Burak Erem, Darrell J. Swenson, Dafang Wang, Michael Steffen, Dana H. Brooks, Peter M. van Dam, Robert S. MacLeod
2011	—	`conf`	Analysis of the criteria of activation-based inverse electrocardiography using convex optimization. EMBC Burak Erem, Peter M. van Dam, Dana H. Brooks
2011	—	`conf`	Centerline extraction with principal curve tracing to improve 3D level set esophagus segmentation in CT images. EMBC Sila Kurugol, Erhan Bas, Deniz Erdogmus, Jennifer G. Dy, Gregory C. Sharp, Dana H. Brooks
2011	—	`conf`	Differential geometric approximation of the gradient and Hessian on a triangulated manifold. ISBI Burak Erem, Dana H. Brooks
2011	—	`conf`	Low-order 4D dynamical modeling of heart motion under respiration. ISBI M. Queralt Madrigal, Gilead Tadmor, G. Crosas Cano, Dana H. Brooks
2011	J	`jnl`	Modeling habituation in rat EEG-evoked responses via a neural mass model with feedback. Biol. Cybern. Srinivas Laxminarayan, Gilead Tadmor, Solomon Gilbert Diamond, Eric L. Miller, Maria Angela Franceschini, Dana H. Brooks
2011	—	`conf`	Progress on multimodal molecular / anatomical intravascular imaging of coronary vessels combining near infrared fluorescence and ultrasound. EMBC Georgios Mallas, Amir Rosenthal, Marcella A. Calfon, R. Nika Razansky, Adam Mauskapf, Farouc A. Jaffer, Dana H. Brooks, Vasilis Ntziachristos
2011	—	`conf`	Refractive effects on optical measurement of alveolar volume: A 2-D ray-tracing approach. EMBC Fatemeh Noushin Golabchi, Dana H. Brooks, Andrew Gouldstone, Charles A. DiMarzio
2011	—	`conf`	Spatiotemporal estimation of activation times of fractionated ECGs on complex heart surfaces. EMBC Burak Erem, Dana H. Brooks, Peter M. van Dam, Jeroen G. Stinstra, Rob S. MacLeod
2011	J	`jnl`	The challenges of writing portable, correct and high performance libraries for GPUs. SIGARCH Comput. Archit. News Miriam Leeser, Devon Yablonski, Dana H. Brooks, Laurie A. Smith King
2010	—	`conf`	3D level set esophagus segmentation in thoracic CT images using spatial, appearance and shape models. ISBI Sila Kurugol, Jennifer G. Dy, Gregory C. Sharp, Dana H. Brooks
2010	—	`conf`	3D reconstruction for multimodality phase microscopy using boundary detection constraints. ISBI Heidy Sierra, Dana H. Brooks, Charles A. DiMarzio
2010	J	`jnl`	Data Specific Spatially Varying Regularization for Multimodal Fluorescence Molecular Tomography. IEEE Trans. Medical Imaging Damon Hyde, Eric L. Miller, Dana H. Brooks, Vasilis Ntziachristos
2010	B	`conf`	Locally Deformable Shape Model to Improve 3D Level Set Based Esophagus Segmentation. ICPR Sila Kurugol, Necmiye Ozay, Jennifer G. Dy, Gregory C. Sharp, Dana H. Brooks
2009	J	`jnl`	Combined Optical Imaging and Mammography of the Healthy Breast: Optical Contrast Derived From Breast Structure and Compression. IEEE Trans. Medical Imaging Qianqian Fang, Stefan A. Carp, Juliette Selb, Gregory Boverman, Quan Zhang, Daniel B. Kopans, Richard H. Moore, Eric L. Miller, Dana H. Brooks, David A. Boas
2009	—	`conf`	Differential Equation-Driven Regularization for Joint FMT-CT Imaging. ISBI Damon Hyde, Eric L. Miller, Dana H. Brooks, Vasilis Ntziachristos
2009	J	`jnl`	Hybrid FMT-CT imaging of amyloid-β plaques in a murine Alzheimer's disease model. NeuroImage Damon Hyde, Ruben de Kleine, Sarah A. MacLaurin, Eric L. Miller, Dana H. Brooks, Thomas Krucker, Vasilis Ntziachristos
2009	—	`conf`	Increasing Temporal Resolution in Hybrid 3D EPI fMRI Studies Using Unfold. ISBI Onur Afacan, William Scott Hoge, Dana H. Brooks, István Ákos Mórocz
2009	—	`conf`	Localizing the Dermis/Epidermis Boundary in Reflectance Confocal Microscopy Images with a Hybrid Classification Algorithm. ISBI Sila Kurugol, Jennifer G. Dy, Milind Rajadhyaksha, Dana H. Brooks
2008	—	`conf`	Detection of the dermis/epidermis boundary in reflectance confocal images using multi-scale classifier with adaptive texture features. ISBI Sila Kurugol, Jennifer G. Dy, Milind Rajadhyaksha, Dana H. Brooks
2008	J	`jnl`	Estimation and Statistical Bounds for Three-Dimensional Polar Shapes in Diffuse Optical Tomography. IEEE Trans. Medical Imaging Gregory Boverman, Eric L. Miller, Dana H. Brooks, David Isaacson, Qianqian Fang, David A. Boas
2008	—	`conf`	New techniques for data fusion in multimodal FMT-CT imaging. ISBI Damon Hyde, Eric L. Miller, Dana H. Brooks, Vasilis Ntziachristos
2008	—	`conf`	RLS-grappa: Reconstructing parallel MRI data with adaptive filters. ISBI William Scott Hoge, Fernando Gallego, Zhikui Xiao, Dana H. Brooks
2007	J	`jnl`	3-D Electrical Impedance Tomography for Piecewise Constant Domains With Known Internal Boundaries. IEEE Trans. Biomed. Eng. Saeed Babaeizadeh, Dana H. Brooks, David Isaacson
2007	J	`jnl`	A Statistical Approach to Inverting the Born Ratio. IEEE Trans. Medical Imaging Damon Hyde, Eric L. Miller, Dana H. Brooks, Vasilis Ntziachristos
2007	J	`jnl`	Analysis and Exploitation of Matrix Structure Arising in Linearized Optical Tomographic Imaging. SIAM J. Matrix Anal. Appl. Damon Hyde, Misha Elena Kilmer, Dana H. Brooks, Eric L. Miller
2007	—	`conf`	Analysis of reconstructions in full view fluorescence molecular tomography. Computational Imaging Damon Hyde, Antoine Soubret, Joshua Dunham, Tobias Lasser, Eric L. Miller, Dana H. Brooks, Vasilis Ntziachristos
2007	—	`conf`	Comparing Mr Imaging Properties of Spiral Trajectories Using the Singular Spectrum of the Analytical Fourier Basis Cross-Correlation Matrix. ISBI Onur Afacan, Dimitris Mitsouras, Dana H. Brooks, Robert V. Mulkern, Frank J. Rybicki
2007	J	`jnl`	Electrical Impedance Tomography for Piecewise Constant Domains Using Boundary Element Shape-Based Inverse Solutions. IEEE Trans. Medical Imaging Saeed Babaeizadeh, Dana H. Brooks
2007	—	`conf`	Fast Regularized Reconstruction of Non-Uniformly Subsampled Partial-Fourier Parallel MRI Data. ISBI William Scott Hoge, Misha Elena Kilmer, Carlos Zacarias-Almarcha, Dana H. Brooks
2007	J	`jnl`	Methods of Solving Reduced Lead Systems for Inverse Electrocardiography. IEEE Trans. Biomed. Eng. Alireza Ghodrati, Dana H. Brooks, Robert S. MacLeod
2007	—	`conf`	Open-Source Environment for Interactive Finite Element Modeling of Optimal ICD Electrode Placement. FIMH Matthew A. Jolley, Jeroen G. Stinstra, David M. Weinstein, Steve Pieper, Raúl San José Estépar, Gordon L. Kindlmann, Robert S. MacLeod, Dana H. Brooks, John K. Triedman
2006	—	`conf`	A spatio-temporal reconstruction algorithm for diffuse optical tomography based on a hemodynamic response function model. ISBI Yiheng Zhang, Dana H. Brooks, David A. Boas
2006	—	`conf`	A statistical method for inverting the Born ratio. ISBI Damon Hyde, Eric L. Miller, Dana H. Brooks, Vasilis Ntziachristos
2006	—	`conf`	A wavefront-based constraint for potential surface solutions in inverse electrocardiography. EMBC Alireza Ghodrati, Andrew Keely, Gilead Tadmor, Robert S. MacLeod, Dana H. Brooks
2006	—	`conf`	Effects of electrode location error on boundary element impedance tomography solutions: CR bounds and simulation results. ISBI Saeed Babaeizadeh, Dana H. Brooks
2006	J	`jnl`	Electrode boundary conditions and experimental validation for BEM-based EIT forward and inverse solutions. IEEE Trans. Medical Imaging Saeed Babaeizadeh, Dana H. Brooks, David Isaacson, Jonathan C. Newell
2006	—	`conf`	Fast regularized reconstruction of non-uniformly subsampled parallel MRI data. ISBI William Scott Hoge, Misha Elena Kilmer, Steven Haker, Dana H. Brooks, Walid E. Kyriakos
2006	—	`conf`	Image Based Modeling of Defibrillation in Children. EMBC Matthew A. Jolley, John K. Triedman, Carl-Fredrik Westin, David M. Weinstein, Robert S. MacLeod, Dana H. Brooks
2006	—	`conf`	Imaging Error from Mislocation of Surface Sensors: Sensitivity, Detection, and Estimate Correction, with Application to EIT. ICASSP (2) Saeed Babaeizadeh, Dana H. Brooks
2006	J	`jnl`	Improved Performance of Bayesian Solutions for Inverse Electrocardiography Using Multiple Information Sources. IEEE Trans. Biomed. Eng. Yesim Serinagaoglu, Dana H. Brooks, Robert S. MacLeod
2006	—	`conf`	On the Complimentarity of Sense and Grappa in Parallel MR Imaging. EMBC W. Scott Hoge, Dana H. Brooks
2006	—	`conf`	Spherical harmonics for shape-based inverse problems as applied to electrical impedance tomography. Computational Imaging Saeed Babaeizadeh, Dana H. Brooks
2006	J	`jnl`	Wavefront-based models for inverse electrocardiography. IEEE Trans. Biomed. Eng. Alireza Ghodrati, Dana H. Brooks, Gilead Tadmor, Robert S. MacLeod
2005	—	`conf`	A Deformable-radius B-Spline Method for Shape-based Inverse Problems, as Applied to Electrical Impedance Tomography. ICASSP (2) Saeed Babaeizadeh, Dana H. Brooks, David Isaacson
2005	—	`conf`	A Method to Reconstruct Activation Wavefronts Without Isotropy Assumptions Using a Level Sets Approach. FIMH Felipe Calderero, Alireza Ghodrati, Dana H. Brooks, Gilead Tadmor, Robert S. MacLeod
2005	J	`jnl`	Bayesian solutions and performance analysis in bioelectric inverse problems. IEEE Trans. Biomed. Eng. Yesim Serinagaoglu, Dana H. Brooks, Robert S. MacLeod
2005	J	`jnl`	Identification of cardiac rhythm features by mathematical analysis of vector fields. IEEE Trans. Biomed. Eng. Tamara N. Fitzgerald, Dana H. Brooks, John K. Triedman
2005	—	`conf`	Sampling Strategies to Enable Computationally Efficient SPACE-RIP for 3D Parallel MR Imaging. ICASSP (2) William Scott Hoge, Lei Zhao, Dana H. Brooks, Walid E. Kyriakos
2005	J	`jnl`	Venous catheter based mapping of ectopic epicardial activation: training data set selection for statistical estimation. IEEE Trans. Biomed. Eng. Bülent Yilmaz, Robert S. MacLeod, Bonnie B. Punske, Bruno Taccardi, Dana H. Brooks
2004	—	`conf`	Analysis of Spatial-Temporal Regularization Methods for Linear Inverse Problems from a Common Statistical Framework. ISBI Yiheng Zhang, Alireza Ghodrati, Dana H. Brooks
2004	J	`jnl`	Comparative psychometric analysis of vector and isochrone cardiac activation maps. IEEE Trans. Biomed. Eng. Tamara N. Fitzgerald, Dana H. Brooks, John K. Triedman
2004	—	`conf`	On the Regularization of SENSE and Space-RIP in Parallel MR Imaging. ISBI William Scott Hoge, Bruno Madore, Walid E. Kyriakos, Dana H. Brooks
2004	—	`conf`	Reduction of Physiological Interference in Optical Functional Neuroimaging Using Eigenvector-Based Spatial Filtering. ISBI Yiheng Zhang, Dana H. Brooks, Maria Angela Franceschini, David A. Boas
2004	—	`conf`	SCIRun/BioPSE: Integrated Problem Solving Environment for Bioelectric Field Problems and Visualization. ISBI Robert S. MacLeod, David M. Weinstein, J. Davison de St. Germain, Christopher R. Johnson, Steven G. Parker, Dana H. Brooks
2003	—	`conf`	A Bayesian approach to inclusion and performance analysis of using extra information in bioelectric inverse problems. ICIP (1) Yesim Serinagaoglu, Dana H. Brooks, Robert S. MacLeod
2003	—	`conf`	Diffuse optical tomography using a linear matrix inequality algorithm in an admissible solution approach. ICIP (1) Amir M. Niroumand, Dana H. Brooks, Bahram Shafai
2003	J	`jnl`	Improved alignment method for noisy high-resolution ECG and Holter records using multiscale cross-correlation. IEEE Trans. Biomed. Eng. Eric Laciar, Raimon Jané, Dana H. Brooks
2002	J	`jnl`	A doubly adaptive approach to dynamic MRI sequence estimation. IEEE Trans. Image Process. William Scott Hoge, Eric L. Miller, Hanoch Lev-Ari, Dana H. Brooks, Lawrence P. Panych
2002	—	`conf`	A multi-resolution admissible solution approach for diffuse optical tomography. ISBI Yiheng Zhang, Dana H. Brooks, David A. Boas
2002	B	`conf`	Closed-form solution for positioning based on angle of arrival measurements. PIMRC Alba Pagès-Zamora, Josep Vidal, Dana H. Brooks
2002	—	`conf`	On the effectiveness of doubly adaptive estimation for dynamic MRI sequence acquisitions. ISBI William Scott Hoge, Lawrence P. Panych, Dana H. Brooks, Eric L. Miller
2001	J	`jnl`	An efficient region of interest acquisition method for dynamic magnetic resonance imaging. IEEE Trans. Image Process. William Scott Hoge, Eric L. Miller, Hanoch Lev-Ari, Dana H. Brooks, William Clement Karl, Lawrence P. Panych
2001	J	`jnl`	Emerging medical imaging modalities. IEEE Signal Process. Mag. Dana H. Brooks
2001	J	`jnl`	Imaging the body with diffuse optical tomography. IEEE Signal Process. Mag. David A. Boas, Dana H. Brooks, Eric L. Miller, Charles A. DiMarzio, Misha E. Kilmer, Richard J. Gaudette, Quan Zhang
1999	Misc	`conf`	Detection of point targets in image sequences by hypothesis testing: a temporal test first approach. ICASSP Alexis Tzannes, Dana H. Brooks
1999	J	`jnl`	Inverse electrocardiography by simultaneous imposition of multiple constraints. IEEE Trans. Biomed. Eng. Dana H. Brooks, Ghandi F. Ahmad, Robert S. MacLeod, George M. Maratos
1998	—	`conf`	Edge Preserving Image Restoration using Convex Optimization. ICIP (2) Kadagattur G. Srinidhi, Dana H. Brooks
1997	J	`jnl`	Electrical imaging of the heart. IEEE Signal Process. Mag. Dana H. Brooks, Rob S. MacLeod
1996	Misc	`conf`	Best basis segmentation of ECG signals using novel optimality criteria. ICASSP Dana H. Brooks, Hamid Krim, Jean-Christophe Pesquet, Robert S. MacLeod
1994	—	`conf`	Imaging the Electrical Activity of the Heart: Direct and Inverse Approaches. ICIP (3) Dana H. Brooks, Robert S. MacLeod
1993	J	`jnl`	Multichannel adaptive blind deconvolution using the complex cepstrum of higher order cross-spectra. IEEE Trans. Signal Process. Dana H. Brooks, Chrysostomos L. Nikias
1993	J	`jnl`	The cross-bicepstrum: definition, properties, and application for simultaneous reconstruction of three nonminimum phase signals. IEEE Trans. Signal Process. Dana H. Brooks, Chrysostomos L. Nikias
1992	Misc	`conf`	Ill-conditioned inverse problems: a solution using the complex cepstrum of higher order spectra. ICASSP Dana H. Brooks
1991	J	`jnl`	Parallel Processing for Biomedical Signal Processing. Computer Elias S. Manolakos, Haris M. Stellakis, Dana H. Brooks
1991	Misc	`conf`	The cross-bicepstrum: properties and applications for signal reconstruction and system identification. ICASSP Dana H. Brooks, Chrysostomos L. Nikias