Dan Zhao

16 papers A* 1B 1Journal 14
YearRankTypeTitle / Venue / Authors
2024 J jnl
A probabilistic knowledge graph for target identification.
PLoS Comput. Biol.
Chang Liu, Kaimin Xiao, Cuinan Yu, Yipin Lei, Kangbo Lyu, Tingzhong Tian, Dan Zhao, Fengfeng Zhou, Haidong Tang, Jianyang Zeng
2024 J jnl
Analyzing Large-Scale Single-Cell RNA-Seq Data Using Coreset.
IEEE ACM Trans. Comput. Biol. Bioinform.
Khalid Usman, Fangping Wan, Dan Zhao, Jian Peng, Jianyang Zeng
2024 J jnl
MolSHAP: Interpreting Quantitative Structure-Activity Relationships Using Shapley Values of R-Groups.
J. Chem. Inf. Model.
Tingzhong Tian, Shuya Li, Meng Fang, Dan Zhao, Jianyang Zeng
2023 J jnl
Characterizing the interaction conformation between T-cell receptors and epitopes with deep learning.
Nat. Mac. Intell.
Xingang Peng, Yipin Lei, Peiyuan Feng, Lemei Jia, Jianzhu Ma, Dan Zhao, Jianyang Zeng
2023 J jnl
DeepRCI: predicting RNA-chromatin interactions via deep learning with multi-omics data.
Quant. Biol.
Yuanpeng Xiong, Xuan He, Dan Zhao, Tao Jiang, Jianyang Zeng
2023 J jnl
Improving comparative analyses of Hi-C data via contrastive self-supervised learning.
Briefings Bioinform.
Han Li, Xuan He, Lawrence Kurowski, Ruotian Zhang, Dan Zhao, Jianyang Zeng
2022 J jnl
Boosting single-cell gene regulatory network reconstruction via bulk-cell transcriptomic data.
Briefings Bioinform.
Hantao Shu, Fan Ding, Jingtian Zhou, Yexiang Xue, Dan Zhao, Jianyang Zeng, Jianzhu Ma
2022 A* conf
KPGT: Knowledge-Guided Pre-training of Graph Transformer for Molecular Property Prediction.
KDD
Han Li, Dan Zhao, Jianyang Zeng
2022 J jnl
KPGT: Knowledge-Guided Pre-training of Graph Transformer for Molecular Property Prediction.
CoRR
Han Li, Dan Zhao, Jianyang Zeng
2022 J jnl
Predicting the protein-ligand affinity from molecular dynamics trajectories.
CoRR
Yaosen Min, Ye Wei, Peizhuo Wang, Nian Wu, Stefan Bauer, Shuxin Zheng, Yu Shi, Yingheng Wang, Dan Zhao, Ji Wu, Jianyang Zeng
2021 J jnl
Full-length ribosome density prediction by a multi-input and multi-output model.
PLoS Comput. Biol.
Tingzhong Tian, Shuya Li, Peng Lang, Dan Zhao, Jianyang Zeng
2021 J jnl
Modeling gene regulatory networks using neural network architectures.
Nat. Comput. Sci.
Hantao Shu, Jingtian Zhou, Qiuyu Lian, Han Li, Dan Zhao, Jianyang Zeng, Jianzhu Ma
2021 J jnl
Riboexp: an interpretable reinforcement learning framework for ribosome density modeling.
Briefings Bioinform.
Hailin Hu, Xianggen Liu, An Xiao, Yangyang Li, Chengdong Zhang, Tao Jiang, Dan Zhao, Sen Song, Jianyang Zeng
2020 J jnl
A novel machine learning framework for automated biomedical relation extraction from large-scale literature repositories.
Nat. Mach. Intell.
Lixiang Hong, Jinjian Lin, Shuya Li, Fangping Wan, Hui Yang, Tao Jiang, Dan Zhao, Jianyang Zeng
2020 B conf
MONN: A Multi-objective Neural Network for Predicting Pairwise Non-covalent Interactions and Binding Affinities Between Compounds and Proteins.
RECOMB
Shuya Li, Fangping Wan, Hantao Shu, Tao Jiang, Dan Zhao, Jianyang Zeng
2019 J jnl
ACME: pan-specific peptide-MHC class I binding prediction through attention-based deep neural networks.
Bioinform.
Yan Hu, Ziqiang Wang, Hailin Hu, Fangping Wan, Lin Chen, Yuanpeng Xiong, Xiaoxia Wang, Dan Zhao, Weiren Huang, Jianyang Zeng