Dan F. DeBlasio

28 papers A* 1B 2C 1Journal 18Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
An educator framework for organizing Wikipedia editathons for computational biology.
Bioinform.
Nelly Sélem-Mojica, Tiago Lubiana, Toni Hermoso Pulido, Aarón Gallego-Crespo, Tülay Karakulak, Megha Hegde, Nicolas C. Näpflin, Audra Anjum, Pradeep Eranti, Dan F. DeBlasio, Jorge Noé García-Chávez, Cynthia Paola Rangel-Chávez, Divanery Rodriguez-Gomez, Varinia López-Ramírez, Juan Vázquez-Martínez, Lonnie R. Welch, Alastair M. Kilpatrick, Farzana Rahman
2024 J jnl
Closing the computational biology 'knowledge gap': Spanish Wikipedia as a case study.
Bioinform.
Nelly Sélem-Mojica, Tülay Karakulak, Audra Anjum, Anton Pashkov, Rafael Pérez-Estrada, Karina Enriquez-Guillén, Dan F. DeBlasio, Sofia Ferreira-Gonzalez, Alejandra Medina-Rivera, Daniel Rodrigo-Torres, Alastair M. Kilpatrick, Lonnie R. Welch, Farzana Rahman
2024 J jnl
How Much Data Is Sufficient to Learn High-Performing Algorithms?
J. ACM
Maria-Florina Balcan, Dan F. DeBlasio, Travis Dick, Carl Kingsford, Tuomas Sandholm, Ellen Vitercik
2024 J jnl
Sketching Methods with Small Window Guarantee Using Minimum Decycling Sets.
J. Comput. Biol.
Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford
2023 J jnl
Sketching methods with small window guarantee using minimum decycling sets.
CoRR
Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford
2021 A* conf
How much data is sufficient to learn high-performing algorithms? generalization guarantees for data-driven algorithm design.
STOC
Maria-Florina Balcan, Dan F. DeBlasio, Travis Dick, Carl Kingsford, Tuomas Sandholm, Ellen Vitercik
2020 J jnl
More Accurate Transcript Assembly via Parameter Advising.
J. Comput. Biol.
Dan F. DeBlasio, Kwanho Kim, Carl Kingsford
2019 J jnl
How much data is sufficient to learn high-performing algorithms?
CoRR
Maria-Florina Balcan, Dan F. DeBlasio, Travis Dick, Carl Kingsford, Tuomas Sandholm, Ellen Vitercik
2019 J jnl
Locality-sensitive hashing for the edit distance.
Bioinform.
Guillaume Marçais, Dan F. DeBlasio, Prashant Pandey, Carl Kingsford
2019 — conf
Practical Universal k-mer Sets for Minimizer Schemes.
BCB
Dan F. DeBlasio, Fiyinfoluwa Gbosibo, Carl Kingsford, Guillaume Marçais
2018 J jnl
Adaptive Local Realignment of Protein Sequences.
J. Comput. Biol.
Dan F. DeBlasio, John D. Kececioglu
2018 J jnl
Asymptotically optimal minimizers schemes.
Bioinform.
Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford
2018 J jnl
Reflections on a journey: a retrospective of the ISCB Student Council symposium series.
BMC Bioinform.
Mehedi Hassan, Aishwarya Alex Namasivayam, Dan F. DeBlasio, Nazeefa Fatima, Benjamin Siranosian, R. Gonzalo Parra, Bart Cuypers, Sayane Shome, Alexander Miguel Monzon, Julien Fumey, Farzana Rahman
2018 J jnl
The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide.
PLoS Comput. Biol.
Anupama Jigisha, Margherita Francescatto, Farzana Rahman, Nazeefa Fatima, Dan F. DeBlasio, Avinash Kumar Shanmugam, Venkata P. Satagopam, Alberto Santos, Pandurang Kolekar, Magali Michaut, Emre Guney
2017 B conf
Boosting Alignment Accuracy by Adaptive Local Realignment.
RECOMB
Dan F. DeBlasio, John D. Kececioglu
2017 J jnl
Core column prediction for protein multiple sequence alignments.
Algorithms Mol. Biol.
Dan F. DeBlasio, John D. Kececioglu
2017 J jnl
Learning Parameter-Advising Sets for Multiple Sequence Alignment.
IEEE ACM Trans. Comput. Biol. Bioinform.
Dan F. DeBlasio, John D. Kececioglu
2017 — book
Parameter Advising for Multiple Sequence Alignment
Dan F. DeBlasio, John D. Kececioglu
2016 — conf
Adaptive Local Realignment via Parameter Advising.
BCB
Dan F. DeBlasio, John D. Kececioglu
2016 J jnl
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.
BMC Bioinform.
Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Raju Nagarajan, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
2016 — —
Parameter Advising for Multiple Sequence Alignment.
Dan F. DeBlasio
2016 C conf
Predicting Core Columns of Protein Multiple Sequence Alignments for Improved Parameter Advising.
WABI
Dan F. DeBlasio, John D. Kececioglu
2015 — conf
Ensemble multiple sequence alignment via advising.
BCB
Dan F. DeBlasio, John D. Kececioglu
2015 J jnl
Highlights from the tenth ISCB Student Council Symposium 2014.
BMC Bioinform.
Farzana Rahman, Katie Wilkins, Annika Jacobsen, Alexander Junge, Esmeralda Vicedo, Dan F. DeBlasio, Anupama Jigisha, Tomás Di Domenico
2015 J jnl
Parameter advising for multiple sequence alignment.
BMC Bioinform.
Dan F. DeBlasio, John D. Kececioglu
2014 — conf
Learning parameter sets for alignment advising.
BCB
Dan F. DeBlasio, John D. Kececioglu
2013 J jnl
Accuracy Estimation and Parameter Advising for Protein Multiple Sequence Alignment.
J. Comput. Biol.
John D. Kececioglu, Dan F. DeBlasio
2012 B conf
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising.
RECOMB
Dan F. DeBlasio, Travis J. Wheeler, John D. Kececioglu