Damien Eveillard

17 papers A 1B 2Journal 8Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
HUMESS: integrating quantitative transcriptomic analysis and metabolic modeling to unveil condition-specific gene signatures.
Bioinform.
Louis Paré, Philippe Bordron, Laurent David, Maxime Mahé, Audrey Bihouée, Damien Eveillard
2020 — book
From Systems Biology to Systems Ecology: A Computational Journey Through Biological Scales. (De la biologie systémique à l'écologie systémique : un voyage informatique à travers les échelles biologiques).
Damien Eveillard
2017 J jnl
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks.
PLoS Comput. Biol.
Sylvain Prigent, Clémence Frioux, Simon M. Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Fabien Gutknecht, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel
2016 J jnl
Deciphering transcriptional regulations coordinating the response to environmental changes.
BMC Bioinform.
Vicente Acuña, Andrés Aravena, Carito Guziolowski, Damien Eveillard, Anne Siegel, Alejandro Maass
2015 — conf
OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques.
CMSB
Marko Budinich, Jérémie Bourdon, Abdelhalim Larhlimi, Damien Eveillard
2013 B conf
An ASP Application in Integrative Biology: Identification of Functional Gene Units.
LPNMR
Philippe Bordron, Damien Eveillard, Alejandro Maass, Anne Siegel, Sven Thiele
2013 B conf
Extending the Metabolic Network of
LPNMR
Guillaume Collet, Damien Eveillard, Martin Gebser, Sylvain Prigent, Torsten Schaub, Anne Siegel, Sven Thiele
2011 J jnl
Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network.
PLoS Comput. Biol.
Jérémie Bourdon, Damien Eveillard, Anne Siegel
2011 — conf
SIPPER: A flexible method to integrate heterogeneous data into a metabolic network.
ICCABS
Philippe Bordron, Damien Eveillard, Irena Rusu
2010 J jnl
Hybrid modeling of biological networks: mixing temporal and qualitative biological properties.
BMC Syst. Biol.
Jonathan Fromentin, Damien Eveillard, Olivier F. Roux
2010 A conf
Including Ordinary Differential Equations Based Constraints in the Standard CP Framework.
CP
Alexandre Goldsztejn, Olivier Mullier, Damien Eveillard, Hiroshi Hosobe
2009 — conf
Comparing Bacterial Genomes by Searching Their Common Intervals.
BICoB
Sébastien Angibaud, Damien Eveillard, Guillaume Fertin, Irena Rusu
2009 J jnl
Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.
Bioinform.
Géraldine Del Mondo, Damien Eveillard, Irena Rusu
2009 J jnl
Temporal constraints of a gene regulatory network: Refining a qualitative simulation.
Biosyst.
Jamil Ahmad, Jérémie Bourdon, Damien Eveillard, Jonathan Fromentin, Olivier F. Roux, Christine Sinoquet
2004 J jnl
A multi-scale constraint programming model of alternative splicing regulation.
Theor. Comput. Sci.
Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr
2004 — conf
Building and Analysing an Integrative Model of HIV-1 RNA Alternative Splicing.
CMSB
Alexander Bockmayr, Arnaud Courtois, Damien Eveillard, M. Vezain
2003 — conf
Multiscale Modeling of Alternative Splicing Regulation.
CMSB
Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr