Daisuke Kihara

90 papers A* 2B 2C 1Misc 2Journal 71Unranked 10
YearRankTypeTitle / Venue / Authors
2026 J jnl
From Unsupervised to Zero-Shot: 3D Domain Adaptation for Cryo-Electron Tomography Segmentation.
Int. J. Comput. Vis.
Haoran Li, Xingjian Li, Huan Wang, Jiahua Shi, Huaming Chen, Bo Du, Johan Barthélemy, Daisuke Kihara, Jun Shen, Min Xu
2025 J jnl
Aligning Proteins and Language: A Foundation Model for Protein Retrieval.
CoRR
Qifeng Wu, Zhengzhe Liu, Han Zhu, Yizhou Zhao, Daisuke Kihara, Min Xu
2025 J jnl
MVGFormer: Multi-view perspective with graph-guided transformer for cryo-ET segmentation.
Knowl. Based Syst.
Haoran Li, Xingjian Li, Huan Wang, Jiahua Shi, Huaming Chen, Yizhou Zhao, Bo Du, Johan Barthélemy, Daisuke Kihara, Jun Shen, Min Xu
2025 J jnl
SHREC 2025: Protein surface shape retrieval including electrostatic potential.
Comput. Graph.
Taher Yacoub, Camille Depenveiller, Atsushi Tatsuma, Tin Barisin, Eugen Rusakov, Udo Göbel, Yuxu Peng, Shiqiang Deng, Yuki Kagaya, Joon Hong Park, Daisuke Kihara, Marco Guerra, Giorgio Palmieri, Andrea Ranieri, Ulderico Fugacci, Silvia Biasotti, Ruiwen He, Halim Benhabiles, Adnane Cabani, Karim Hammoudi, Haotian Li, Hao Huang, Chunyan Li, Alireza Tehrani, Fanwang Meng, Farnaz Heidar-Zadeh, Tuan-Anh Yang, Matthieu Montès
2025 J jnl
SHREC 2025: Protein surface shape retrieval including electrostatic potential.
CoRR
Taher Yacoub, Camille Depenveiller, Atsushi Tatsuma, Tin Barisin, Eugen Rusakov, Udo Göbel, Yuxu Peng, Shiqiang Deng, Yuki Kagaya, Joon Hong Park, Daisuke Kihara, Marco Guerra, Giorgio Palmieri, Andrea Ranieri, Ulderico Fugacci, Silvia Biasotti, Ruiwen He, Halim Benhabiles, Adnane Cabani, Karim Hammoudi, Haotian Li, Hao Huang, Chunyan Li, Alireza Tehrani, Fanwang Meng, Farnaz Heidar-Zadeh, Tuan-Anh Yang, Matthieu Montès
2025 J jnl
Semi-MoE: Mixture-of-Experts meets Semi-Supervised Histopathology Segmentation.
CoRR
Nguyen Lan Vi Vu, Thanh-Huy Nguyen, Thien Nguyen, Daisuke Kihara, Tianyang Wang, Xingjian Li, Min Xu
2025 J jnl
Twenty years of advances in prediction of nucleic acid-binding residues in protein sequences.
Briefings Bioinform.
Sushmita Basu, Jing Yu, Daisuke Kihara, Lukasz A. Kurgan
2025 A* conf
Vox-UDA: Voxel-wise Unsupervised Domain Adaptation for Cryo-Electron Subtomogram Segmentation with Denoised Pseudo-Labeling.
AAAI
Haoran Li, Xingjian Li, Jiahua Shi, Huaming Chen, Bo Du, Daisuke Kihara, Johan Barthélemy, Jun Shen, Min Xu
2024 J jnl
ACC-ViT : Atrous Convolution's Comeback in Vision Transformers.
CoRR
Nabil Ibtehaz, Ning Yan, Masood S. Mortazavi, Daisuke Kihara
2024 J jnl
Fusion of regional and sparse attention in Vision Transformers.
CoRR
Nabil Ibtehaz, Ning Yan, Masood S. Mortazavi, Daisuke Kihara
2024 — conf
SHREC2024: Non-rigid Complementary Shapes Retrieval in Protein-protein Interactions.
3DOR (Short Papers)
Taher Yacoub, Nika Zarubina, Camille Depenveiller, Hoang-Phuc Nguyen, Vinh-Toan Vong, Minh-Triet Tran, Yuki Kagaya, Tsukasa Nakamura, Daisuke Kihara, Florent Langenfeld, Matthieu Montès
2024 J jnl
Vox-UDA: Voxel-wise Unsupervised Domain Adaptation for Cryo-Electron Subtomogram Segmentation with Denoised Pseudo Labeling.
CoRR
Haoran Li, Xingjian Li, Jiahua Shi, Huaming Chen, Bo Du, Daisuke Kihara, Johan Barthélemy, Jun Shen, Min Xu
2023 — conf
ACC-UNet: A Completely Convolutional UNet Model for the 2020s.
MICCAI (3)
Nabil Ibtehaz, Daisuke Kihara
2023 J jnl
ACC-UNet: A Completely Convolutional UNet model for the 2020s.
CoRR
Nabil Ibtehaz, Daisuke Kihara
2023 J jnl
Editorial: Expert opinions in protein bioinformatics: 2022.
Frontiers Bioinform.
Daisuke Kihara
2023 J jnl
Enhancing cryo-EM maps with 3D deep generative networks for assisting protein structure modeling.
Bioinform.
Sai Raghavendra Maddhuri Venkata Subramaniya, Genki Terashi, Daisuke Kihara
2022 J jnl
ContactPFP: Protein Function Prediction Using Predicted Contact Information.
Frontiers Bioinform.
Yuki Kagaya, Sean Flannery, Aashish Jain, Daisuke Kihara
2022 J jnl
OC_Finder: Osteoclast Segmentation, Counting, and Classification Using Watershed and Deep Learning.
Frontiers Bioinform.
Xiao Wang, Mizuho Kittaka, Yilin He, Yiwei Zhang, Yasuyoshi Ueki, Daisuke Kihara
2022 A* conf
On the Importance of Asymmetry for Siamese Representation Learning.
CVPR
Xiao Wang, Haoqi Fan, Yuandong Tian, Daisuke Kihara, Xinlei Chen
2022 J jnl
On the Importance of Asymmetry for Siamese Representation Learning.
CoRR
Xiao Wang, Haoqi Fan, Yuandong Tian, Daisuke Kihara, Xinlei Chen
2022 J jnl
SHREC 2021: Classification in cryo-electron tomograms.
CoRR
Ilja Gubins, Marten L. Chaillet, Gijs van der Schot, M. Cristina Trueba, Remco C. Veltkamp, Friedrich Förster, Xiao Wang, Daisuke Kihara, Emmanuel Moebel, Nguyen P. Nguyen, Tommi A. White, Filiz Bunyak, Giorgos Papoulias, Stavros Gerolymatos, Evangelia I. Zacharaki, Konstantinos Moustakas, Xiangrui Zeng, Sinuo Liu, Min Xu, Yaoyu Wang, Cheng Chen, Xuefeng Cui, Fa Zhang
2022 J jnl
SHREC 2022: Protein-ligand binding site recognition.
Comput. Graph.
Luca Gagliardi, Andrea Raffo, Ulderico Fugacci, Silvia Biasotti, Walter Rocchia, Hao Huang, Boulbaba Ben Amor, Yi Fang, Yuanyuan Zhang, Xiao Wang, Charles Christoffer, Daisuke Kihara, Apostolos Axenopoulos, Stelios K. Mylonas, Petros Daras
2022 J jnl
Using steered molecular dynamic tension for assessing quality of computational protein structure models.
J. Comput. Chem.
Lyman Monroe, Daisuke Kihara
2021 J jnl
Efficient Flexible Fitting Refinement with Automatic Error Fixing for De Novo Structure Modeling from Cryo-EM Density Maps.
J. Chem. Inf. Model.
Takaharu Mori, Genki Terashi, Daisuke Matsuoka, Daisuke Kihara, Yuji Sugita
2021 J jnl
EnAET: A Self-Trained Framework for Semi-Supervised and Supervised Learning With Ensemble Transformations.
IEEE Trans. Image Process.
Xiao Wang, Daisuke Kihara, Jiebo Luo, Guo-Jun Qi
2021 J jnl
LZerD webserver for pairwise and multiple protein-protein docking.
Nucleic Acids Res.
Charles Christoffer, Siyang Chen, Vijay Bharadwaj, Tunde Aderinwale, Vidhur Kumar, Matin Hormati, Daisuke Kihara
2021 J jnl
Protein contact map refinement for improving structure prediction using generative adversarial networks.
Bioinform.
Sai Raghavendra Maddhuri Venkata Subramaniya, Genki Terashi, Aashish Jain, Yuki Kagaya, Daisuke Kihara
2021 — conf
SHREC 2021: Classification in Cryo-electron Tomograms.
3DOR
Ilja Gubins, Marten L. Chaillet, Gijs van der Schot, M. Cristina Trueba, Remco C. Veltkamp, Friedrich Förster, Xiao Wang, Daisuke Kihara, Emmanuel Moebel, Nguyen P. Nguyen, Tommi A. White, Filiz Bunyak, Giorgos Papoulias, Stavros Gerolymatos, Evangelia I. Zacharaki, Konstantinos Moustakas, Xiangrui Zeng, Sinuo Liu, Min Xu, Yaoyu Wang, Cheng Chen, Xuefeng Cui, Fa Zhang
2021 J jnl
SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties.
Comput. Graph.
Andrea Raffo, Ulderico Fugacci, Silvia Biasotti, Walter Rocchia, Yonghuai Liu, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Evangelia I. Zacharaki, Eleftheria Psatha, Dimitrios Laskos, Gerasimos Arvanitis, Konstantinos Moustakas, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Daisuke Kihara, Andrea Giachetti, Huu-Nghia Nguyen, Tuan-Duy Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le-Thanh, Hai-Dang Nguyen, Minh-Triet Tran
2021 — conf
SHREC 2021: Surface-based Protein Domains Retrieval.
3DOR
Florent Langenfeld, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Genki Terashi, Xiao Wang, Daisuke Kihara, Halim Benhabiles, Karim Hammoudi, Adnane Cabani, Féryal Windal, Mahmoud Melkemi, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Yonghuai Liu, Léa Sirugue, Huu-Nghia H. Nguyen, Tuan-Duy H. Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le, Hai-Dang Nguyen, Minh-Triet Tran, Matthieu Montès
2020 J jnl
2DKD: a toolkit for content-based local image search.
Source Code Biol. Medicine
Julian S. Deville, Daisuke Kihara, Atilla Sit
2020 Misc conf
A Simple But Effective Bert Model for Dialog State Tracking on Resource-Limited Systems.
ICASSP
Tuan Manh Lai, Quan Hung Tran, Trung Bui, Daisuke Kihara
2020 J jnl
MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with Symmetry.
J. Chem. Inf. Model.
Genki Terashi, Yuki Kagaya, Daisuke Kihara
2020 — ch.
Path-LZerD: Predicting Assembly Order of Multimeric Protein Complexes.
Protein-Protein Interaction Networks
Genki Terashi, Charles Christoffer, Daisuke Kihara
2020 J jnl
Protein docking model evaluation by 3D deep convolutional neural networks.
Bioinform.
Xiao Wang, Genki Terashi, Charles Christoffer, Mengmeng Zhu, Daisuke Kihara
2020 J jnl
SHREC 2020: Classification in cryo-electron tomograms.
Comput. Graph.
Ilja Gubins, Marten L. Chaillet, Gijs van der Schot, Remco C. Veltkamp, Friedrich Förster, Yu Hao, Xiaohua Wan, Xuefeng Cui, Fa Zhang, Emmanuel Moebel, Xiao Wang, Daisuke Kihara, Xiangrui Zeng, Min Xu, Nguyen P. Nguyen, Tommi A. White, Filiz Bunyak
2020 J jnl
SHREC 2020: Multi-domain protein shape retrieval challenge.
Comput. Graph.
Florent Langenfeld, Yuxu Peng, Yu-Kun Lai, Paul L. Rosin, Tunde Aderinwale, Genki Terashi, Charles Christoffer, Daisuke Kihara, Halim Benhabiles, Karim Hammoudi, Adnane Cabani, Féryal Windal, Mahmoud Melkemi, Andrea Giachetti, Stelios K. Mylonas, Apostolos Axenopoulos, Petros Daras, Ekpo Otu, Matthieu Montès
2019 — conf
A Gated Self-attention Memory Network for Answer Selection.
EMNLP/IJCNLP (1)
Tuan Manh Lai, Quan Hung Tran, Trung Bui, Daisuke Kihara
2019 J jnl
A Gated Self-attention Memory Network for Answer Selection.
CoRR
Tuan Manh Lai, Quan Hung Tran, Trung Bui, Daisuke Kihara
2019 J jnl
A Simple but Effective BERT Model for Dialog State Tracking on Resource-Limited Systems.
CoRR
Tuan Manh Lai, Quan Hung Tran, Trung Bui, Daisuke Kihara
2019 J jnl
A global map of the protein shape universe.
PLoS Comput. Biol.
Xusi Han, Atilla Sit, Charles Christoffer, Siyang Chen, Daisuke Kihara
2019 — conf
Classification in Cryo-Electron Tomograms.
3DOR@Eurographics
Ilja Gubins, Gijs van der Schot, Remco C. Veltkamp, Friedrich Förster, Xuefeng Du, Xiangrui Zeng, Zhenxi Zhu, Lufan Chang, Min Xu, Emmanuel Moebel, Antonio Martínez-Sánchez, Charles Kervrann, Tuan Manh Lai, Xusi Han, Genki Terashi, Daisuke Kihara, Benjamin A. Himes, Xiaohua Wan, Jingrong Zhang, Shan Gao, Yu Hao, Zhilong Lv, Xiaohua Wan, Zhidong Yang, Zijun Ding, Xuefeng Cui, Fa Zhang
2019 J jnl
EnAET: Self-Trained Ensemble AutoEncoding Transformations for Semi-Supervised Learning.
CoRR
Xiao Wang, Daisuke Kihara, Jiebo Luo, Guo-Jun Qi
2019 — conf
Matching of EM Map Segments to Structurally-Relevant Bio-molecular Regions.
CARLA
Manuel Zumbado Corrales, Luis Castillo-Valverde, José Salas-Bonilla, Julio Víquez-Murillo, Daisuke Kihara, Juan Esquivel-Rodríguez
2019 J jnl
Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences.
Bioinform.
Aashish Jain, Daisuke Kihara
2019 J jnl
Predicting binding poses and affinity ranking in D3R Grand Challenge using PL-PatchSurfer2.0.
J. Comput. Aided Mol. Des.
Woong-Hee Shin, Daisuke Kihara
2019 J jnl
Prediction of protein group function by iterative classification on functional relevance network.
Bioinform.
Ishita K. Khan, Aashish Jain, Reda Rawi, Halima Bensmail, Daisuke Kihara
2019 — conf
Protein Shape Retrieval Contest.
3DOR@Eurographics
Florent Langenfeld, Apostolos Axenopoulos, Halim Benhabiles, Petros Daras, Andrea Giachetti, Xusi Han, Karim Hammoudi, Daisuke Kihara, Tuan Manh Lai, Haiguang Liu, Mahmoud Melkemi, Stelios K. Mylonas, Genki Terashi, Yufan Wang, Féryal Windal, Matthieu Montès
2019 — ch.
Study of the Variability of the Native Protein Structure.
Encyclopedia of Bioinformatics and Computational Biology (3)
Xusi Han, Woong-Hee Shin, Charles Christoffer, Genki Terashi, Lyman Monroe, Daisuke Kihara
2019 J jnl
Three-dimensional Krawtchouk descriptors for protein local surface shape comparison.
Pattern Recognit.
Atilla Sit, Woong-Hee Shin, Daisuke Kihara
2018 J jnl
IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Satwica Yerneni, Ishita K. Khan, Qing Wei, Daisuke Kihara
2018 J jnl
Modeling the assembly order of multimeric heteroprotein complexes.
PLoS Comput. Biol.
Lenna X. Peterson, Yoichiro Togawa, Juan Esquivel-Rodríguez, Genki Terashi, Charles Christoffer, Amitava Roy, Woong-Hee Shin, Daisuke Kihara
2017 J jnl
A Study of the Boltzmann Sequence-Structure Channel.
Proc. IEEE
Abram Magner, Daisuke Kihara, Wojciech Szpankowski
2017 J jnl
DextMP: deep dive into text for predicting moonlighting proteins.
Bioinform.
Ishita K. Khan, Mansurul Bhuiyan, Daisuke Kihara
2017 J jnl
Modeling disordered protein interactions from biophysical principles.
PLoS Comput. Biol.
Lenna X. Peterson, Amitava Roy, Charles Christoffer, Genki Terashi, Daisuke Kihara
2017 J jnl
NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology.
BMC Bioinform.
Qing Wei, Ishita K. Khan, Ziyun Ding, Satwica Yerneni, Daisuke Kihara
2017 — conf
Protein Shape Retrieval.
3DOR@Eurographics
Na Song, Daniela Craciun, Charles Christoffer, Xusi Han, Daisuke Kihara, Guillaume Levieux, Matthieu Montès, Hong Qin, Pranjal Sahu, Genki Terashi, Haiguang Liu
2016 J jnl
Combined Approach of Patch-Surfer and PL-PatchSurfer for Protein-Ligand Binding Prediction in CSAR 2013 and 2014.
J. Chem. Inf. Model.
Xiaolei Zhu, Woong-Hee Shin, Hyungrae Kim, Daisuke Kihara
2016 J jnl
Ensemble-based evaluation for protein structure models.
Bioinform.
Michal Jamróz, Andrzej Kolinski, Daisuke Kihara
2016 J jnl
Genome-scale prediction of moonlighting proteins using diverse protein association information.
Bioinform.
Ishita K. Khan, Daisuke Kihara
2016 J jnl
PL-PatchSurfer2: Improved Local Surface Matching-Based Virtual Screening Method That Is Tolerant to Target and Ligand Structure Variation.
J. Chem. Inf. Model.
Woong-Hee Shin, Charles Christoffer, Ji-Bo Wang, Daisuke Kihara
2016 J jnl
Ranking protein-protein docking results using steered molecular dynamics and potential of mean force calculations.
J. Comput. Chem.
Laura J. Kingsley, Juan Esquivel-Rodríguez, Ying Yang, Daisuke Kihara, Markus A. Lill
2016 B conf
The Boltzmann sequence-structure channel.
ISIT
Abram Magner, Daisuke Kihara, Wojciech Szpankowski
2015 J jnl
GenoBase: comprehensive resource database of
Nucleic Acids Res.
Yuta Otsuka, Ai Muto, Rikiya Takeuchi, Chihiro Okada, Motokazu Ishikawa, Koichiro Nakamura, Natsuko Yamamoto, Hitomi Dose, Kenji Nakahigashi, Shigeki Tanishima, Sivasundaram Suharnan, Wataru Nomura, Toru Nakayashiki, Walid G. Aref, Barry R. Bochner, Tyrrell Conway, Michael Gribskov, Daisuke Kihara, Kenneth E. Rudd, Yukako Tohsato, Barry L. Wanner, Hirotada Mori
2015 J jnl
Large-scale binding ligand prediction by improved patch-based method Patch-Surfer2.0.
Bioinform.
Xiaolei Zhu, Yi Xiong, Daisuke Kihara
2015 J jnl
Navigating 3D electron microscopy maps with EM-SURFER.
BMC Bioinform.
Juan Esquivel-Rodríguez, Yi Xiong, Xusi Han, Shuomeng Guang, Charles Christoffer, Daisuke Kihara
2015 J jnl
PFP/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool.
Bioinform.
Ishita K. Khan, Qing Wei, Meghana Chitale, Daisuke Kihara
2015 Misc conf
Phase transitions in a sequence-structure channel.
ITA
Abram Magner, Daisuke Kihara, Wojciech Szpankowski
2014 J jnl
Comparison of Image Patches Using Local Moment Invariants.
IEEE Trans. Image Process.
Atilla Sit, Daisuke Kihara
2014 J jnl
The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio.
Bioinform.
Jim Cavalcoli, Lonnie R. Welch, Bruce J. Aronow, Sorin Draghici, Daisuke Kihara
2013 B conf
Evaluation of Arterial Stiffness during the Flow-Mediated Dilation Test.
SMC
Harutoyo Hirano, Daisuke Kihara, Hiroki Hirano, Yuichi Kurita, Teiji Ukawa, Tsuneo Takayanagi, Haruka Morimoto, Ryuji Nakamura, Noboru Saeki, Yukihito Higashi, Masashi Kawamoto, Masao Yoshizumi, Toshio Tsuji
2013 J jnl
In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment.
BMC Bioinform.
Meghana Chitale, Ishita K. Khan, Daisuke Kihara
2012 J jnl
Constructing patch-based ligand-binding pocket database for predicting function of proteins.
BMC Bioinform.
Lee Sael, Daisuke Kihara
2012 J jnl
Effective inter-residue contact definitions for accurate protein fold recognition.
BMC Bioinform.
Chao Yuan, Hao Chen, Daisuke Kihara
2012 J jnl
Evaluation of multiple protein docking structures using correctly predicted pairwise subunits.
BMC Bioinform.
Juan Esquivel-Rodríguez, Daisuke Kihara
2012 J jnl
Protein docking prediction using predicted protein-protein interface.
BMC Bioinform.
Bin Li, Daisuke Kihara
2012 J jnl
Protein domain recurrence and order can enhance prediction of protein functions.
Bioinform.
Mario Abdel Messih, Meghana Chitale, Vladimir B. Bajic, Daisuke Kihara, Xin Gao
2011 J jnl
Quantification of Protein Group Coherence and Pathway Assignment Using Functional Association.
BMC Bioinform.
Meghana Chitale, Shriphani Palakodety, Daisuke Kihara
2010 J jnl
Characterization and Classification of Local Protein Surfaces Using Self-Organizing Map.
Int. J. Knowl. Discov. Bioinform.
Lee Sael, Daisuke Kihara
2010 J jnl
Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP.
BMC Bioinform.
Troy Hawkins, Meghana Chitale, Daisuke Kihara
2010 J jnl
Improved protein surface comparison and application to low-resolution protein structure data.
BMC Bioinform.
Lee Sael, Daisuke Kihara
2009 J jnl
3D-SURFER: software for high-throughput protein surface comparison and analysis.
Bioinform.
David La, Juan Esquivel-Rodríguez, Vishwesh Venkatraman, Bin Li, Lee Sael, Stephen Ueng, Steven Ahrendt, Daisuke Kihara
2009 J jnl
Application of 3D Zernike descriptors to shape-based ligand similarity searching.
J. Cheminformatics
Vishwesh Venkatraman, Padmasini Chakravarthy, Daisuke Kihara
2009 J jnl
ESG: extended similarity group method for automated protein function prediction.
Bioinform.
Meghana Chitale, Troy Hawkins, Changsoon Park, Daisuke Kihara
2009 J jnl
Protein-protein docking using region-based 3D Zernike descriptors.
BMC Bioinform.
Vishwesh Venkatraman, Yifeng D. Yang, Lee Sael, Daisuke Kihara
2008 J jnl
Combining gene sequence similarity and textual information for gene function annotation in the literature.
Inf. Retr.
Luo Si, Danni Yu, Daisuke Kihara, Yi Fang
2007 J jnl
Function Prediction of uncharacterized proteins.
J. Bioinform. Comput. Biol.
Troy Hawkins, Daisuke Kihara
2007 — conf
Salient critical points for meshes.
Symposium on Solid and Physical Modeling
Yu-Shen Liu, Min Liu, Daisuke Kihara, Karthik Ramani
2007 C conf
Tracing Lineage in Multi-version Scientific Databases.
BIBE
Mingwu Zhang, Daisuke Kihara, Sunil Prabhakar
2006 J jnl
EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.
BMC Bioinform.
Jianjun Hu, Yifeng D. Yang, Daisuke Kihara