Dagmar Waltemath

92 papers C 1Misc 1Journal 53Unranked 34
YearRankTypeTitle / Venue / Authors
2026 J jnl
FAIR Data Workflow Implementation and Assessment for Ion-Exchange Chromatography in Plasma Science.
Data Sci. J.
Robert Wagner, Ron Henkel, Markus M. Becker, Kristina Yordanova, Dagmar Waltemath
2025 — conf
A Knowledge Graph for Enhanced Study Discovery and Semantic Exploration.
SWAT4HCLS
Lea Gütebier, Dagmar Waltemath, Ron Henkel
2025 — conf
Demonstrating Study Discovery and Exploration Through a Knowledge Graph.
SWAT4HCLS
Lea Gütebier, Dagmar Waltemath, Ron Henkel
2025 — conf
Demonstration: The MeDaX-KG on FHIR.
SWAT4HCLS
Ilya Mazein, Tom Gebhardt, Sebastian Berthe, Kai Fitzer, Ron Henkel, Markus Mandalka, Seyed Reza Mazlooman, Lea Michaelis, Dagmar Waltemath, Benjamin Winter, Judith A. H. Wodke
2024 — conf
Applying the RDA Data Maturity Model on the Core Dataset of the German Medical Informatics Initiative.
SWAT4HCLS
Lea Michaelis, Esther Thea Inau, Michael Rusongoza Muzoora, Judith A. H. Wodke, Thomas Ganslandt, Sylvia Thun, Dagmar Waltemath
2024 J jnl
Graph databases in systems biology: a systematic review.
Briefings Bioinform.
Ilya Mazein, Adrien Rougny, Alexander Mazein, Ron Henkel, Lea Gütebier, Lea Michaelis, Marek Ostaszewski, Reinhard Schneider, Venkata P. Satagopam, Lars Juhl Jensen, Dagmar Waltemath, Judith A. H. Wodke, Irina Balaur
2024 J jnl
Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19.
Datenbank-Spektrum
Iris Pigeot, Wolfgang Ahrens, Johannes Darms, Juliane Fluck, Martin Golebiewski, Horst K. Hahn, Xiaoming Hu, Timm Intemann, Elisa Kasbohm, Toralf Kirsten, Sebastian Klammt, Sophie Anne Ines Klopfenstein, Bianca Lassen-Schmidt, Manuela Peters, Ulrich Sax, Dagmar Waltemath, Carsten Oliver Schmidt
2024 — conf
MeDaX Prototype v0.2.
SWAT4HCLS
Ilya Mazein, Sarah Braun, Tom Gebhardt, Ron Henkel, Lea Michaelis, Dagmar Waltemath, Judith A. H. Wodke
2024 — conf
MeDaX: A Knowledge Graph on FHIR.
MIE
Ilya Mazein, Tom Gebhardt, Lea Michaelis, Dagmar Waltemath, Ron Henkel
2024 J jnl
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024.
J. Integr. Bioinform.
Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
2024 J jnl
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5.
J. Integr. Bioinform.
Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König
2024 C conf
Towards FAIR Data Workflows for Multidisciplinary Science: Ongoing Endeavors and Future Perspectives in Plasma Technology.
DATA
Robert Wagner, Dagmar Waltemath, Kristina Yordanova, Markus M. Becker
2023 — conf
A Survey on the Current Status of Research Data Management in Mecklenburg-Vorpommern Preliminary Results for a Questionnaire Study Among Researchers.
CoRDI
Max Schröder, Sascha Genehr, Rüdiger Köhling, Stefan Schmidt, Ralf Schneider, Sascha Spors, Gero Szepannek, Dagmar Waltemath, Frank Krüger
2023 — conf
Assessing the FAIRness of Deep Learning Models in Cardiovascular Disease Using Computed Tomography Images: Data and Code Perspective.
MIE
Kirubel Biruk Shiferaw, Atinkut Zeleke, Dagmar Waltemath
2023 — conf
Building the Next Generation of Data Savvy Biomedical Researchers.
CoRDI
Jens Dierkes, Birte Lindstädt, Ulrich Sax, Canan Hastik, Julia Fürst, Tanja Hörner, Sebastian Klammt, Ines Perrar, Iris Pigeot, Katja Restel, Carsten Oliver Schmidt, Aliaksandra Shutsko, Dagmar Waltemath, Atinkut Zeleke
2023 — conf
Contributions to the reuse and reproducibility of computational biology models.
SWAT4HCLS
Ron Henkel, Dagmar Waltemath
2023 — conf
Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains.
CoRDI
Dagmar Waltemath, Esther Thea Inau, Lea Michaelis, Venkata P. Satagopam, Irina Balaur
2023 — conf
Experiences from compiling a FAIR survey in the German Network University Medicine.
SWAT4HCLS
Lea Michaelis, Rasim Atakan Poyraz, Michael Rusongoza Muzoora, Kerstin Gierend, Alexander Bartschke, Dagmar Waltemath, Sylvia Thun
2023 — conf
Exploring New Possibilities for Research Data Exploration Using the Example of the German Core Data Set.
MIE
Felix Menzel, Dagmar Waltemath, Ron Henkel
2023 — conf
Exploring Use Cases for CovidGraph.
MIE
Lea Gütebier, Ron Henkel, Christian Niklas, Dagmar Waltemath
2023 — conf
First Steps Towards the FAIRification of the DZD CORE DATASET at the German Center for Diabetes Research.
SWAT4HCLS
Esther Thea Inau, Angela Dedie, Ivona Anastasova, Andreas Birkenfeld, Brigitte Fröhlich, Martin Hrabe de Angelis, Michael Roden, Renate Schick, Yaroslav Zdravomyslov, Atinkut Zeleke, Dagmar Waltemath, Martin Preusse
2023 — conf
Harvesting the Low Hanging Fruits From the FAIRtree.
MIE
Esther Thea Inau, Atinkut Zeleke, Dagmar Waltemath
2023 — conf
Herding Cats in Pandemic Times - Towards Technological and Organizational Convergence of Heterogeneous Solutions for Investigating and Mastering the Pandemic in University Medical Centers.
MedInfo
Dagmar Krefting, Nico T. Mutters, Rüdiger Pryss, Martin Sedlmayr, Martin Boeker, Christoph Dieterich, Carolin Koll, Martina Mueller, Anna Slagman, Dagmar Waltemath, Antje Wulff, Sven Zenker
2023 — conf
Identifying Relevant FHIR Elements for Data Quality Assessment in the German Core Data Set.
MIE
Christian Draeger, Erik Tute, Carsten Oliver Schmidt, Dagmar Waltemath, Martin Boeker, Alfred Winter, Matthias Löbe
2023 — conf
Insights into the FAIRness of the German Network University Medicine: A Survey.
MIE
Lea Michaelis, Rasim Atakan Poyraz, Michael Rusongoza Muzoora, Kerstin Gierend, Alexander Bartschke, Christoph Dieterich, Tim Johann, Dagmar Krefting, Dagmar Waltemath, Sylvia Thun
2023 — conf
MeDaX project plan: How to sustainably improve biomedical (research) data management.
SWAT4HCLS
Judith A. H. Wodke, Ron Henkel, Dagmar Waltemath
2023 — conf
Representing Sex and Gender Information in Biomedical Research.
MIE
Dagmar Waltemath, Hilke Beelich, Philipp Töpfer, Corinna Bergelt, Agnes Flöel, Elpiniki Katsari, Elke Krüger, Stine Lutze, Michael Schöner, Sebastian Paschen, Moritz Roloff, Hanne Roth, Sylvia Stracke
2023 J jnl
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.
J. Integr. Bioinform.
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
2023 — conf
TAPP: Defining standard provenance information for clinical research data and workflows - Obstacles and opportunities.
WWW (Companion Volume)
Kerstin Gierend, Judith A. H. Wodke, Sascha Genehr, Robert Gött, Ron Henkel, Frank Krüger, Markus Mandalka, Lea Michaelis, Alexander Scheuerlein, Max Schröder, Atinkut Zeleke, Dagmar Waltemath
2022 J jnl
Addressing
Briefings Bioinform.
Anna Niarakis, Dagmar Waltemath, James A. Glazier, Falk Schreiber, Sarah M. Keating, David P. Nickerson, Claudine Chaouiya, Anne Siegel, Vincent Noël, Henning Hermjakob, Tomás Helikar, Sylvain Soliman, Laurence Calzone
2022 — conf
CovidGraph: Integrating COVID-19 Data.
MIE
Ron Henkel, Lea Gütebier, Dagmar Waltemath
2022 J jnl
CovidGraph: a graph to fight COVID-19.
Bioinform.
Lea Gütebier, Tim Bleimehl, Ron Henkel, Jamie Munro, Sebastian Müller, Axel Morgner, Jakob Laenge, Anke Pachauer, Alexander Erdl, Jens Weimar, Kirsten Walther Langendorf, Vincent Vialard, Thorsten Liebig, Martin Preusse, Dagmar Waltemath, Alexander Jarasch
2022 — conf
Disparities in Regional Publication Trends on the Topic of Artificial Intelligence in Biomedical Science Over the Last Five Years: A Bibliometric Analysis.
MIE
Kirubel Biruk Shiferaw, Dagmar Waltemath, Atinkut Zeleke
2021 — conf
COVIDGraph: Connecting Biomedical COVID-19 Resources and Computational Biology Models.
SEA-Data@VLDB
Martin Preusse, Alexander Jarasch, Tim Bleimehl, Sebastian Müller, Jamie Munro, Lea Gütebier, Ron Henkel, Dagmar Waltemath
2021 — conf
Facilitating Study and Item Level Browsing for Clinical and Epidemiological COVID-19 Studies.
MIE
Carsten Oliver Schmidt, Johannes Darms, Aliaksandra Shutsko, Matthias Löbe, Rajini Nagrani, Bastian Seifert, Birte Lindstädt, Martin Golebiewski, Sofiya Koleva, Theresa Bender, Christian Robert Bauer, Ulrich Sax, Xiaoming Hu, Michael Lieser, Vivien Junker, Sophie Klopfenstein, Atinkut Zeleke, Dagmar Waltemath, Iris Pigeot, Juliane Fluck
2021 — conf
Investigating the FAIR Equivalency in National Guidance in Health in Kenya.
EFMI-STC
Esther Thea Inau, Reginald Nalugala, William Muhadi Nandwa, Fredrick Obwanda, Antony Wachira, Dagmar Waltemath, Antonio Cartaxo, Atinkut Zeleke
2021 J jnl
OMEX metadata specification (version 1.2).
J. Integr. Bioinform.
John H. Gennari, Matthias König, Goksel Misirli, Maxwell Lewis Neal, David P. Nickerson, Dagmar Waltemath
2021 J jnl
SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks.
Briefings Bioinform.
Adrien Rougny, Vasundra Touré, John Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly A. Sorokin, Gary D. Bader, Michael L. Blinov, Alexander Mazein
2021 J jnl
Specifications of standards in systems and synthetic biology: status and developments in 2021.
J. Integr. Bioinform.
Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
2021 J jnl
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4.
J. Integr. Bioinform.
Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König
2020 J jnl
Open modeling and exchange (OMEX) metadata specification version 1.0.
J. Integr. Bioinform.
Maxwell Lewis Neal, John H. Gennari, Dagmar Waltemath, David P. Nickerson, Matthias König
2020 J jnl
Specifications of standards in systems and synthetic biology: status and developments in 2020.
J. Integr. Bioinform.
Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
2020 J jnl
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
J. Integr. Bioinform.
Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik-Sheriff, David P. Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
2020 J jnl
Towards standardization guidelines for in silico approaches in personalized medicine.
J. Integr. Bioinform.
Søren Brunak, Catherine Bjerre Collin, Katharina Eva Ó Cathaoir, Martin Golebiewski, Marc Kirschner, Ingrid Kockum, Heike Moser, Dagmar Waltemath
2019 J jnl
Harmonizing semantic annotations for computational models in biology.
Briefings Bioinform.
Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath
2019 J jnl
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
J. Integr. Bioinform.
Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath
2019 J jnl
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integr. Bioinform.
Michael Hucka, Frank T. Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Matthias König, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Rahuman S. Malik-Sheriff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson, Fengkai Zhang
2018 J jnl
Evolution of computational models in BioModels Database and the Physiome Model Repository.
BMC Syst. Biol.
Martin Scharm, Tom Gebhardt, Vasundra Touré, Andrea Bagnacani, Ali Salehzadeh-Yazdi, Olaf Wolkenhauer, Dagmar Waltemath
2018 J jnl
Identifying frequent patterns in biochemical reaction networks - a workflow.
PeerJ Prepr.
Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel
2018 J jnl
Identifying frequent patterns in biochemical reaction networks: a workflow.
Database J. Biol. Databases Curation
Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel
2018 J jnl
Notions of similarity for systems biology models.
Briefings Bioinform.
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
2018 J jnl
Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.
PLoS Comput. Biol.
Vasundra Touré, Nicolas Le Novère, Dagmar Waltemath, Olaf Wolkenhauer
2018 J jnl
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3).
J. Integr. Bioinform.
Frank T. Bergmann, Jonathan Cooper, Matthias König, Ion I. Moraru, David P. Nickerson, Nicolas Le Novère, Brett G. Olivier, Sven Sahle, Lucian P. Smith, Dagmar Waltemath
2018 J jnl
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.
J. Integr. Bioinform.
Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
2018 J jnl
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integr. Bioinform.
Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson
2018 J jnl
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
J. Integr. Bioinform.
Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson
2017 Misc conf
A brief history of COMBINE.
WSC
Chris J. Myers, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, David P. Nickerson, Falk Schreiber, Dagmar Waltemath
2017 J jnl
Identifying frequent patterns in biochemical reaction networks - a workflow.
PeerJ Prepr.
Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel
2017 J jnl
Notions of similarity for systems biology models.
Briefings Bioinform.
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
2017 J jnl
SED-ML web tools: generate, modify and export standard-compliant simulation studies.
Bioinform.
Frank T. Bergmann, David P. Nickerson, Dagmar Waltemath, Martin Scharm
2017 J jnl
The JWS online simulation database.
Bioinform.
Martin Peters, Johann J. Eicher, David D. van Niekerk, Dagmar Waltemath, Jacky L. Snoep
2016 J jnl
A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in
F1000Research
Martin Scharm, Dagmar Waltemath
2016 J jnl
An algorithm to detect and communicate the differences in computational models describing biological systems.
Bioinform.
Martin Scharm, Olaf Wolkenhauer, Dagmar Waltemath
2016 J jnl
COMODI: an ontology to characterise differences in versions of computational models in biology.
J. Biomed. Semant.
Martin Scharm, Dagmar Waltemath, Pedro Mendes, Olaf Wolkenhauer
2016 — conf
Challenges and opportunities for system biology standards and tools in medical research.
ODLS
Matthias König, Anika Oellrich, Dagmar Waltemath, Richard J. B. Dobson, Tim J. P. Hubbard, Olaf Wolkenhauer
2016 J jnl
Finding patterns in biochemical reaction networks.
PeerJ Prepr.
Ron Henkel, Fabienne Lambusch, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Dagmar Waltemath
2016 J jnl
How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine.
IEEE Trans. Biomed. Eng.
Dagmar Waltemath, Olaf Wolkenhauer
2016 J jnl
STON: exploring biological pathways using the SBGN standard and graph databases.
BMC Bioinform.
Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor A. S. Saqi, Ron Henkel, Johann Pellet, Charles Auffray
2016 J jnl
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.
J. Integr. Bioinform.
Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath
2016 J jnl
Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Eng.
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
2015 J jnl
Annotation-based feature extraction from sets of SBML models.
J. Biomed. Semant.
Rebekka Alm, Dagmar Waltemath, Markus Wolfien, Olaf Wolkenhauer, Ron Henkel
2015 J jnl
Combining computational models, semantic annotations and simulation experiments in a graph database.
Database J. Biol. Databases Curation
Ron Henkel, Olaf Wolkenhauer, Dagmar Waltemath
2015 — conf
Extracting reproducible simulation studies from model repositories using the combinearchive toolkit.
BTW Workshops
Martin Scharm, Dagmar Waltemath
2015 J jnl
Finding pattern in biochemical reaction networks - a sub-graph mining approach.
PeerJ Prepr.
Ron Henkel, Fabienne Lambusch, Dagmar Waltemath
2015 J jnl
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2.
J. Integr. Bioinform.
Frank T. Bergmann, Jonathan Cooper, Nicolas Le Novère, David P. Nickerson, Dagmar Waltemath
2015 J jnl
Specifications of Standards in Systems and Synthetic Biology.
J. Integr. Bioinform.
Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise
2015 J jnl
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
J. Integr. Bioinform.
Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson
2014 — conf
Annotation-Based Feature Extraction from Sets of SBML Models.
DILS
Rebekka Alm, Dagmar Waltemath, Olaf Wolkenhauer, Ron Henkel
2014 J jnl
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
BMC Bioinform.
Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
2014 J jnl
COMBINE archive: One File To Share Them All.
CoRR
Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
2014 — conf
How Can Semantic Annotations Support the Identification of Network Similarities?
SWAT4LS
Christian Rosenke, Dagmar Waltemath
2014 — ch.
Information Retrieval in Life Sciences: A Programmatic Survey.
Approaches in Integrative Bioinformatics
Matthias Lange, Ron Henkel, Wolfgang Müller, Dagmar Waltemath, Stephan Weise
2014 — conf
MaSyMoS: Finding Hidden Treasures in Model Repositories.
SWAT4LS
Ron Henkel, Dagmar Waltemath
2014 — ch.
Simulation Experiment Description Markup Language (SED-ML).
Encyclopedia of Computational Neuroscience
Dagmar Waltemath, Nicolas Le Novère
2014 — conf
The CombineArchiveWeb Application - A Web-based Tool to Handle Files Associated with Modelling Results.
SWAT4LS
Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath
2013 J jnl
Improving the reuse of computational models through version control.
Bioinform.
Dagmar Waltemath, Ron Henkel, Robert Hälke, Martin Scharm, Olaf Wolkenhauer
2012 — conf
Considerations of graph-based concepts to manage of computational biology models and associated simulations.
GI-Jahrestagung
Ron Henkel, Nicolas Le Novère, Olaf Wolkenhauer, Dagmar Waltemath
2011 — —
Annotation-based storage and retrieval of models and simulation descriptions in computational biology
Dagmar Waltemath
2011 J jnl
Das Sombi-Framework zum Ermitteln geeigneter Suchfunktionen für biologische Modelldatenbasen.
Datenbank-Spektrum
Dagmar Waltemath, Ron Henkel, Holger Meyer, Andreas Heuer
2011 J jnl
Minimum Information About a Simulation Experiment (MIASE).
PLoS Comput. Biol.
Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère
2011 J jnl
Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language.
BMC Syst. Biol.
Dagmar Waltemath, Richard R. Adams, Frank T. Bergmann, Michael Hucka, Fedor A. Kolpakov, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Sven Sahle, Jacky L. Snoep, Nicolas Le Novère
2010 J jnl
Ranked retrieval of Computational Biology models.
BMC Bioinform.
Ron Henkel, Lukas Endler, André Peters, Nicolas Le Novère, Dagmar Waltemath