Dachuan Zhang

35 papers Journal 35
YearRankTypeTitle / Venue / Authors
2024 J jnl
High-throughput prediction of enzyme promiscuity based on substrate-product pairs.
Briefings Bioinform.
Huadong Xing, Pengli Cai, Dongliang Liu, Mengying Han, Juan Liu, Yingying Le, Dachuan Zhang, Qian-Nan Hu
2023 J jnl
RDBridge: a knowledge graph of rare diseases based on large-scale text mining.
Bioinform.
Huadong Xing, Dachuan Zhang, Pengli Cai, Rui Zhang, Qian-Nan Hu
2023 J jnl
SynBioTools: a one-stop facility for searching and selecting synthetic biology tools.
BMC Bioinform.
Pengli Cai, Sheng Liu, Dachuan Zhang, Huadong Xing, Mengying Han, Dongliang Liu, Linlin Gong, Qian-Nan Hu
2023 J jnl
The conserved domain database in 2023.
Nucleic Acids Res.
Jiyao Wang, Farideh Chitsaz, Myra K. Derbyshire, Noreen R. Gonzales, Marc Gwadz, Shennan Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Mingzhang Yang, Dachuan Zhang, Chanjuan Zheng, Christopher J. Lanczycki, Aron Marchler-Bauer
2022 J jnl
BioBulkFoundary: a customized webserver for exploring biosynthetic potentials of bulk chemicals.
Bioinform.
Dandan Sun, Shaozhen Ding, Pengli Cai, Dachuan Zhang, Mengying Han, Qian-Nan Hu
2022 J jnl
Contrastive learning-based computational histopathology predict differential expression of cancer driver genes.
Briefings Bioinform.
Haojie Huang, Gongming Zhou, Xuejun Liu, Lei Deng, Chen Wu, Dachuan Zhang, Hui Liu
2022 J jnl
Contrastive learning-based computational histopathology predict differential expression of cancer driver genes.
CoRR
Haojie Huang, Gongming Zhou, Xuejun Liu, Lei Deng, Chen Wu, Dachuan Zhang, Hui Liu
2022 J jnl
Convolutional neural network with coarse-to-fine resolution fusion and residual learning structures for cross-modality image synthesis.
Biomed. Signal Process. Control.
Guoqing Wu, Xi Chen, Zhifeng Shi, Dachuan Zhang, Zhaoyu Hu, Ying Mao, Yuanyuan Wang, Jinhua Yu
2022 J jnl
Integrating a deep forest algorithm with vector-based cellular automata for urban land change simulation.
Trans. GIS
Haoming Zhuang, Xiaoping Liu, Yuchao Yan, Dachuan Zhang, Jialyu He, Jinqiang He, Xinchang Zhang, Honghui Zhang, Manchun Li
2022 J jnl
Simulating multiple urban land use changes by integrating transportation accessibility and a vector-based cellular automata: a case study on city of Toronto.
Geo spatial Inf. Sci.
Xiaocong Xu, Dachuan Zhang, Xiaoping Liu, Jinpei Ou, Xinxin Wu
2021 J jnl
Accurate Estimation of the Proportion of Mixed Land Use at the Street-Block Level by Integrating High Spatial Resolution Images and Geospatial Big Data.
IEEE Trans. Geosci. Remote. Sens.
Jialyu He, Xia Li, Penghua Liu, Xinxin Wu, Jinbao Zhang, Dachuan Zhang, Xiaojuan Liu, Yao Yao
2021 J jnl
ChemHub: a knowledgebase of functional chemicals for synthetic biology studies.
Bioinform.
Mengying Han, Dachuan Zhang, Shaozhen Ding, Yu Tian, Xingxiang Cheng, Le Yuan, Dandan Sun, Dongliang Liu, Linlin Gong, Cancan Jia, Pengli Cai, Weizhong Tu, Junni Chen, Qian-Nan Hu
2021 J jnl
IFoodCloud: A Platform for Real-time Sentiment Analysis of Public Opinion about Food Safety in China.
CoRR
Dachuan Zhang, Haoyang Zhang, Zhisheng Wei, Yan Li, Zhiheng Mao, Chunmeng He, Haorui Ma, Xin Zeng, Xiaoling Xie, Xingran Kou, Bingwen Zhang
2021 J jnl
Multi-Field Synergy Manipulating Soft Polymeric Hydrogel Transformers.
Adv. Intell. Syst.
Dachuan Zhang, Jiawei Zhang, Yukun Jian, Baoyi Wu, Huizhen Yan, Huanhuan Lu, Shuxin Wei, Si Wu, Qunji Xue, Tao Chen
2021 J jnl
SARS2020: an integrated platform for identification of novel coronavirus by a consensus sequence-function model.
Bioinform.
Dachuan Zhang, Tong Zhang, Sheng Liu, Dandan Sun, Shaozhen Ding, Xingxiang Cheng, Pengli Cai, Ailin Ren, Mengying Han, Dongliang Liu, Cancan Jia, Linlin Gong, Rui Zhang, Huadong Xing, Weizhong Tu, Junni Chen, Qian-Nan Hu
2021 J jnl
Transcriptor: a comprehensive platform for annotation of the enzymatic functions of transcripts.
Bioinform.
Ailin Ren, Dachuan Zhang, Yu Tian, Pengli Cai, Tong Zhang, Qian-Nan Hu
2020 J jnl
BCSExplorer: a customized biosynthetic chemical space explorer with multifunctional objective function analysis.
Bioinform.
Yu Tian, Ling Wu, Le Yuan, Shaozhen Ding, Fu Chen, Tong Zhang, Ailin Ren, Dachuan Zhang, Weizhong Tu, Junni Chen, Qian-Nan Hu
2020 J jnl
CDD/SPARCLE: the conserved domain database in 2020.
Nucleic Acids Res.
Shennan Lu, Jiyao Wang, Farideh Chitsaz, Myra K. Derbyshire, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, Gabriele H. Marchler, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Mingzhang Yang, Dachuan Zhang, Chanjuan Zheng, Christopher J. Lanczycki, Aron Marchler-Bauer
2020 J jnl
EnzyMine: a comprehensive database for enzyme function annotation with enzymatic reaction chemical feature.
Database J. Biol. Databases Curation
Dandan Sun, Xingxiang Cheng, Yu Tian, Shaozhen Ding, Dachuan Zhang, Pengli Cai, Qian-Nan Hu
2020 J jnl
RxnBLAST: molecular scaffold and reactive chemical environment feature extractor for biochemical reactions.
Bioinform.
Xingxiang Cheng, Dandan Sun, Dachuan Zhang, Yu Tian, Shaozhen Ding, Pengli Cai, Qian-Nan Hu
2020 J jnl
iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.
Bioinform.
Jiyao Wang, Philippe Youkharibache, Dachuan Zhang, Christopher J. Lanczycki, Renata C. Geer, Thomas Madej, Lon Phan, Minghong Ward, Shennan Lu, Gabriele H. Marchler, Yanli Wang, Stephen H. Bryant, Lewis Y. Geer, Aron Marchler-Bauer
2020 J jnl
novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model.
Nucleic Acids Res.
Shaozhen Ding, Yu Tian, Pengli Cai, Dachuan Zhang, Xingxiang Cheng, Dandan Sun, Le Yuan, Junni Chen, Weizhong Tu, Dong-Qing Wei, Qian-Nan Hu
2017 J jnl
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.
Nucleic Acids Res.
Aron Marchler-Bauer, Bo Yu, Lianyi Han, Jane He, Christopher J. Lanczycki, Shennan Lu, Farideh Chitsaz, Myra K. Derbyshire, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, Fu Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Zhouxi Wang, Roxanne A. Yamashita, Dachuan Zhang, Chanjuan Zheng, Lewis Y. Geer, Stephen H. Bryant
2017 J jnl
Friction Compensation Based on Time-Delay Control and Internal Model Control for a Gimbal System in Magnetically Suspended CMG.
IEEE Trans. Ind. Electron.
Peiling Cui, Dachuan Zhang, Shan Yang, Haitao Li
2017 J jnl
Simulation of Urban Expansion and Farmland Loss in China by Integrating Cellular Automata and Random Forest.
CoRR
Yao Yao, Xiaoping Liu, Dachuan Zhang, Zhaotang Liang, Yatao Zhang
2015 J jnl
CDD: NCBI's conserved domain database.
Nucleic Acids Res.
Aron Marchler-Bauer, Myra K. Derbyshire, Noreen R. Gonzales, Shennan Lu, Farideh Chitsaz, Lewis Y. Geer, Renata C. Geer, Jane He, Marc Gwadz, David I. Hurwitz, Christopher J. Lanczycki, Fu Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Zhouxi Wang, Roxanne A. Yamashita, Dachuan Zhang, Chanjuan Zheng, Stephen H. Bryant
2014 J jnl
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res.
Thomas Madej, Christopher J. Lanczycki, Dachuan Zhang, Paul A. Thiessen, Renata C. Geer, Aron Marchler-Bauer, Stephen H. Bryant
2013 J jnl
CDD: conserved domains and protein three-dimensional structure.
Nucleic Acids Res.
Aron Marchler-Bauer, Chanjuan Zheng, Farideh Chitsaz, Myra K. Derbyshire, Lewis Y. Geer, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, Christopher J. Lanczycki, Fu Lu, Shennan Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Stephen H. Bryant
2012 J jnl
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins.
Nucleic Acids Res.
Benjamin A. Shoemaker, Dachuan Zhang, Manoj Tyagi, Ratna R. Thangudu, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Thomas Madej, Anna R. Panchenko
2012 J jnl
MMDB: 3D structures and macromolecular interactions.
Nucleic Acids Res.
Thomas Madej, Kenneth J. Addess, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Christopher J. Lanczycki, Chunlei Liu, Shennan Lu, Aron Marchler-Bauer, Anna R. Panchenko, Jie Chen, Paul A. Thiessen, Yanli Wang, Dachuan Zhang, Stephen H. Bryant
2011 J jnl
CDD: a Conserved Domain Database for the functional annotation of proteins.
Nucleic Acids Res.
Aron Marchler-Bauer, Shennan Lu, John B. Anderson, Farideh Chitsaz, Myra K. Derbyshire, Carol DeWeese-Scott, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Marina V. Omelchenko, Cynthia L. Robertson, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Naigong Zhang, Chanjuan Zheng, Stephen H. Bryant
2010 J jnl
Inferred Biomolecular Interaction Server - a web server to analyze and predict protein interacting partners and binding sites.
Nucleic Acids Res.
Benjamin A. Shoemaker, Dachuan Zhang, Ratna R. Thangudu, Manoj Tyagi, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Tom Madej, Anna R. Panchenko
2009 J jnl
CDD: specific functional annotation with the Conserved Domain Database.
Nucleic Acids Res.
Aron Marchler-Bauer, John B. Anderson, Farideh Chitsaz, Myra K. Derbyshire, Carol DeWeese-Scott, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Asba Tasneem, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Naigong Zhang, Stephen H. Bryant
2007 J jnl
CDD: a conserved domain database for interactive domain family analysis.
Nucleic Acids Res.
Aron Marchler-Bauer, John B. Anderson, Myra K. Derbyshire, Carol DeWeese-Scott, Noreen R. Gonzales, Marc Gwadz, Luning Hao, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Dmitri M. Krylov, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant
2005 J jnl
CDD: a Conserved Domain Database for protein classification.
Nucleic Acids Res.
Aron Marchler-Bauer, John B. Anderson, Praveen F. Cherukuri, Carol DeWeese-Scott, Lewis Y. Geer, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant