D. Louis Collins

250 papers A 7B 5Journal 140Unranked 94

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A High-Fidelity Neurosurgical Training Platform for Bimanual Procedures: A Feasibility Study. CoRR Houssem-Eddine Gueziri, Abicumaran Uthamacumaran, Widad Safih, Abdulrahman Almansouri, Nour Abou Hamdan, Jose A. Correa, Étienne Léger, D. Louis Collins, Rolando F. Del Maestro
2025	J	`jnl`	Assessment of cognitive load in the context of neurosurgery. Int. J. Comput. Assist. Radiol. Surg. Daniel Di Giovanni, Marta Kersten-Oertel, Simon Drouin, D. Louis Collins
2025	—	`conf`	Predicting Cognitive Outcomes by Mapping White Matter Tracts to Surface. MLMI@MICCAI Yoonmi Hong, Omar Azrak, Jason J. Wolff, Meghan R. Swanson, Jed T. Elison, Guido Gerig, John R. Pruett Jr., Clement Vachet, Kelly N. Botteron, Stephen R. Dager, Annette M. Estes, Heather Cody Hazlett, Robert T. Schultz, Mark D. Shen, Lonnie Zwaigenbaum, Alan C. Evans, D. Louis Collins, Vladimir S. Fonov, Emil Cornea, Jessica B. Girault, Mark Foster, Sun Hyung Kim, Dea Garic, Juan Carlos Prieto, Joseph Piven, John H. Gilmore, Martin Styner
2024	—	`conf`	An Evaluation of Low-Cost Hardware on 3D Ultrasound Reconstruction Accuracy. ASMUS@MICCAI Étienne Léger, Niki Najafi, Houssem-Eddine Gueziri, D. Louis Collins, Marta Kersten-Oertel
2023	—	`conf`	Hessian-Based Similarity Metric for Multimodal Medical Image Registration. MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI Mohammadreza Eskandari, Houssem-Eddine Gueziri, D. Louis Collins
2022	J	`jnl`	DARQ: Deep learning of quality control for stereotaxic registration of human brain MRI to the T1w MNI-ICBM 152 template. NeuroImage Vladimir S. Fonov, Mahsa Dadar, D. Louis Collins
2022	J	`jnl`	Estimating medical image registration error and confidence: A taxonomy and scoping review. Medical Image Anal. Joshua Bierbrier, Houssem-Eddine Gueziri, D. Louis Collins
2022	J	`jnl`	Fast Streamline Search: An Exact Technique for Diffusion MRI Tractography. Neuroinformatics Etienne St-Onge, Eleftherios Garyfallidis, D. Louis Collins
2021	—	`conf`	3D MRI Brain Tumour Segmentation with Autoencoder Regularization and Hausdorff Distance Loss Function. BrainLes@MICCAI (1) Vladimir S. Fonov, Pedro Rosa-Neto, D. Louis Collins
2021	—	`conf`	Evaluation of Low-Cost Hardware Alternatives for 3D Freehand Ultrasound Reconstruction in Image-Guided Neurosurgery. ASMUS@MICCAI Étienne Léger, Houssem-Eddine Gueziri, D. Louis Collins, Tiberiu Popa, Marta Kersten-Oertel
2021	—	`conf`	Fast Tractography Streamline Search. CDMRI@MICCAI Etienne St-Onge, Eleftherios Garyfallidis, D. Louis Collins
2021	J	`jnl`	Spine and Individual Vertebrae Segmentation in Computed Tomography Images Using Geometric Flows and Shape Priors. Frontiers Comput. Sci. Pulkit Khandelwal, D. Louis Collins, Kaleem Siddiqi
2020	J	`jnl`	Automated separation of diffusely abnormal white matter from focal white matter lesions on MRI in multiple sclerosis. NeuroImage Josefina Maranzano, Mahsa Dadar, Maryna Zhernovaia, Douglas L. Arnold, D. Louis Collins, Sridar Narayanan
2020	J	`jnl`	Automatic extraction of vertebral landmarks from ultrasound images: A pilot study. Comput. Biol. Medicine Arnaud Brignol, Houssem-Eddine Gueziri, Farida Cheriet, D. Louis Collins, Catherine Laporte
2020	J	`jnl`	Brain volume loss in individuals over time: Source of variance and limits of detectability. NeuroImage Sridar Narayanan, Kunio Nakamura, Vladimir S. Fonov, Josefina Maranzano, Zografos Caramanos, Paul S. Giacomini, D. Louis Collins, Douglas L. Arnold
2020	J	`jnl`	Interaction Driven Enhancement of Depth Perception in Angiographic Volumes. IEEE Trans. Vis. Comput. Graph. Simon Drouin, Daniel Di Giovanni, Marta Kersten-Oertel, D. Louis Collins
2020	J	`jnl`	MARIN: an open-source mobile augmented reality interactive neuronavigation system. Int. J. Comput. Assist. Radiol. Surg. Étienne Léger, Jonatan Reyes, Simon Drouin, Tiberiu Popa, Jeffery A. Hall, D. Louis Collins, Marta Kersten-Oertel
2020	J	`jnl`	Neuroanatomical changes in white and grey matter after sleeve gastrectomy. NeuroImage Andréanne Michaud, Mahsa Dadar, Mélissa Pelletier, Yashar Zeighami, Isabel Garcia-Garcia, Sylvain Iceta, Yvonne Yau, Mélanie Nadeau, Simon Marceau, Laurent Biertho, André Tchernof, D. Louis Collins, Denis Richard, Alain Dagher
2020	J	`jnl`	The state-of-the-art in ultrasound-guided spine interventions. Medical Image Anal. Houssem-Eddine Gueziri, Carlo Santaguida, D. Louis Collins
2019	J	`jnl`	A clinical-anatomical signature of Parkinson's disease identified with partial least squares and magnetic resonance imaging. NeuroImage Yashar Zeighami, Seyed-Mohammad Fereshtehnejad, Mahsa Dadar, D. Louis Collins, Ronald B. Postuma, Bratislav Misic, Alain Dagher
2019	J	`jnl`	An Optimized PatchMatch for Multi-scale and Multi-feature Label Fusion. CoRR Rémi Giraud, Vinh-Thong Ta, Nicolas Papadakis, José V. Manjón, D. Louis Collins, Pierrick Coupé, Alzheimer's Disease Neuroimaging Initiative
2019	B	`conf`	Assessment of Cognitive Load in the Context of Neurosurgery. CogSci Daniel Di Giovanni, Simon Drouin, Marta Kersten-Oertel, D. Louis Collins
2019	J	`jnl`	Cognitive load associations when utilizing auditory display within image-guided neurosurgery. Int. J. Comput. Assist. Radiol. Surg. Joseph Plazak, Daniel A. DiGiovanni, D. Louis Collins, Marta Kersten-Oertel
2019	J	`jnl`	Cortical and subcortical T1 white/gray contrast, chronological age, and cognitive performance. NeuroImage John D. Lewis, Vladimir S. Fonov, D. Louis Collins, Alan C. Evans, Jussi Tohka
2019	—	`conf`	Early Prediction of Alzheimer's Disease Progression Using Variational Autoencoders. MICCAI (4) Sumana Basu, Konrad Wagstyl, Azar Zandifar, D. Louis Collins, Adriana Romero, Doina Precup
2019	J	`jnl`	Predictive model of spread of Parkinson's pathology using network diffusion. NeuroImage Sneha Pandya, Yashar Zeighami, Benjamin Freeze, Mahsa Dadar, D. Louis Collins, Alain Dagher, Ashish Raj
2019	J	`jnl`	Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge. CoRR Hugo J. Kuijf, J. Matthijs Biesbroek, Jeroen de Bresser, Rutger Heinen, Simon Andermatt, Mariana P. Bento, Matt Berseth, Mikhail Belyaev, M. Jorge Cardoso, Adrià Casamitjana, D. Louis Collins, Mahsa Dadar, Achilleas Georgiou, Mohsen Ghafoorian, Dakai Jin, April Khademi, Jesse Knight, Hongwei Li, Xavier Lladó, Miguel Luna, Qaiser Mahmood, Richard McKinley, Alireza Mehrtash, Sébastien Ourselin, Bo-yong Park, Hyunjin Park, Sang Hyun Park, Simon Pezold, Élodie Puybareau, Letícia Rittner, Carole H. Sudre, Sergi Valverde, Verónica Vilaplana, Roland Wiest, Yongchao Xu, Ziyue Xu, Guodong Zeng, Jianguo Zhang, Guoyan Zheng, Christopher Li Hsian Chen, Wiesje M. van der Flier, Frederik Barkhof, Max A. Viergever, Geert Jan Biessels
2019	J	`jnl`	Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge. IEEE Trans. Medical Imaging Hugo J. Kuijf, Adrià Casamitjana, D. Louis Collins, Mahsa Dadar, Achilleas Georgiou, Mohsen Ghafoorian, Dakai Jin, April Khademi, Jesse Knight, Hongwei Li, Xavier Lladó, J. Matthijs Biesbroek, Miguel Luna, Qaiser Mahmood, Richard McKinley, Alireza Mehrtash, Sébastien Ourselin, Bo-yong Park, Hyunjin Park, Sang Hyun Park, Simon Pezold, Élodie Puybareau, Jeroen de Bresser, Letícia Rittner, Carole H. Sudre, Sergi Valverde, Verónica Vilaplana, Roland Wiest, Yongchao Xu, Ziyue Xu, Guodong Zeng, Jianguo Zhang, Guoyan Zheng, Rutger Heinen, Christopher Li Hsian Chen, Wiesje M. van der Flier, Frederik Barkhof, Max A. Viergever, Geert Jan Biessels, Simon Andermatt, Mariana P. Bento, Matt Berseth, Mikhail Belyaev, M. Jorge Cardoso
2019	J	`jnl`	The hippocampal-to-ventricle ratio (HVR): Presentation of a manual segmentation protocol and preliminary evidence. NeuroImage Dorothee Schoemaker, Claudia Buss, Sandra Pietrantonio, Larah Maunder, Silka Dawn Freiesleben, Johanna Hartmann, D. Louis Collins, Sonia J. Lupien, Jens C. Pruessner
2019	J	`jnl`	Toward real-time rigid registration of intra-operative ultrasound with preoperative CT images for lumbar spinal fusion surgery. Int. J. Comput. Assist. Radiol. Surg. Houssem-Eddine Gueziri, Simon Drouin, Charles X. B. Yan, D. Louis Collins
2018	J	`jnl`	A comparison of publicly available linear MRI stereotaxic registration techniques. NeuroImage Mahsa Dadar, Vladimir S. Fonov, D. Louis Collins, Alzheimer's Disease Neuroimaging Initiative
2018	B	`conf`	A novel framework for the local extraction of extra-axial cerebrospinal fluid from MR brain images. Image Processing Mahmoud Mostapha, Mark D. Shen, Sun Hyung Kim, Meghan R. Swanson, D. Louis Collins, Vladimir S. Fonov, Guido Gerig, Joseph Piven, Martin A. Styner
2018	J	`jnl`	An augmented-reality system prototype for guiding transcranial Doppler ultrasound examination. Multim. Tools Appl. Yiming Xiao, Simon Drouin, Ian J. Gerard, Vladimir S. Fonov, Bérengère Aubert-Broche, Yuhan Ma, Marta Kersten-Oertel, Donatella Tampieri, D. Louis Collins
2018	J	`jnl`	Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. NeuroImage Aaron Carass, Jennifer L. Cuzzocreo, Shuo Han, Carlos R. Hernandez-Castillo, Paul E. Rasser, Melanie Ganz, Vincent Beliveau, Jose Dolz, Ismail Ben Ayed, Christian Desrosiers, Benjamin Thyreau, José E. Romero, Pierrick Coupé, José V. Manjón, Vladimir S. Fonov, D. Louis Collins, Sarah H. Ying, Chiadi U. Onyike, Jerry L. Prince
2018	—	`conf`	Fast Registration of CT with Intra-operative Ultrasound Images for Spine Surgery. CSI@MICCAI Houssemeddine Guedri, D. Louis Collins
2018	J	`jnl`	Guest editorial for the IJCARS special issue on MICCAI 2017. Int. J. Comput. Assist. Radiol. Surg. Maxime Descoteaux, Lena Maier-Hein, Alfred M. Franz, Pierre Jannin, D. Louis Collins, Simon Duchesne
2018	J	`jnl`	PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space. NeuroImage Benjamin De Leener, Vladimir S. Fonov, D. Louis Collins, Virginie Callot, Nikola Stikov, Julien Cohen-Adad
2018	J	`jnl`	Special Issue on MICCAI 2017. Medical Image Anal. Maxime Descoteaux, Lena Maier-Hein, Alfred M. Franz, Pierre Jannin, D. Louis Collins, Simon Duchesne
2018	J	`jnl`	The EADC-ADNI harmonized protocol for hippocampal segmentation: A validation study. NeuroImage Azar Zandifar, Vladimir S. Fonov, Jens C. Pruessner, D. Louis Collins, Alzheimer's Disease Neuroimaging Initiative
2018	J	`jnl`	Toward defining deep brain stimulation targets in MNI space: A subcortical atlas based on multimodal MRI, histology and structural connectivity. NeuroImage Siobhan Ewert, Philip Plettig, Ningfei Li, M. Mallar Chakravarty, D. Louis Collins, Todd M. Herrington, Andrea A. Kühn, Andreas Horn
2017	J	`jnl`	A comparison of accurate automatic hippocampal segmentation methods. NeuroImage Azar Zandifar, Vladimir S. Fonov, Pierrick Coupé, Jens C. Pruessner, D. Louis Collins
2017	J	`jnl`	Brain shift in neuronavigation of brain tumors: A review. Medical Image Anal. Ian J. Gerard, Marta Kersten-Oertel, Kevin Petrecca, Denis Sirhan, Jeffery A. Hall, D. Louis Collins
2017	J	`jnl`	IBIS: an OR ready open-source platform for image-guided neurosurgery. Int. J. Comput. Assist. Radiol. Surg. Simon Drouin, Anna Kochanowska, Marta Kersten-Oertel, Ian J. Gerard, Rina Zelmann, Dante De Nigris, Silvain Bériault, Tal Arbel, Denis Sirhan, Abbas F. Sadikot, Jeffery A. Hall, David S. Sinclair, Kevin Petrecca, Rolando F. DelMaestro, D. Louis Collins
2017	—	`ed.`	Medical Image Computing and Computer Assisted Intervention - MICCAI 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part I MICCAI (1) Maxime Descoteaux, Lena Maier-Hein, Alfred M. Franz, Pierre Jannin, D. Louis Collins, Simon Duchesne
2017	—	`ed.`	Medical Image Computing and Computer Assisted Intervention - MICCAI 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part II MICCAI (2) Maxime Descoteaux, Lena Maier-Hein, Alfred M. Franz, Pierre Jannin, D. Louis Collins, Simon Duchesne
2017	—	`ed.`	Medical Image Computing and Computer Assisted Intervention - MICCAI 2017 - 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part III MICCAI (3) Maxime Descoteaux, Lena Maier-Hein, Alfred M. Franz, Pierre Jannin, D. Louis Collins, Simon Duchesne
2017	J	`jnl`	Performance comparison of 10 different classification techniques in segmenting white matter hyperintensities in aging. NeuroImage Mahsa Dadar, Josefina Maranzano, Karen Misquitta, Cassandra J. Anor, Vladimir S. Fonov, Maria Carmela Tartaglia, Owen T. Carmichael, Charles DeCarli, D. Louis Collins, Alzheimer's Disease Neuroimaging Initiative
2017	J	`jnl`	SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. NeuroImage Benjamin De Leener, Simon Lévy, Sara M. Dupont, Vladimir S. Fonov, Nikola Stikov, D. Louis Collins, Virginie Callot, Julien Cohen-Adad
2017	—	`conf`	Towards Automatic Collateral Circulation Score Evaluation in Ischemic Stroke Using Image Decompositions and Support Vector Machines. CMMI/RAMBO/SWITCH@MICCAI Yiming Xiao, Ali Alamer, Vladimir S. Fonov, Benjamin W. Y. Lo, Donatella Tampieri, D. Louis Collins, Hassan Rivaz, Marta Kersten-Oertel
2017	J	`jnl`	Validation of a Regression Technique for Segmentation of White Matter Hyperintensities in Alzheimer's Disease. IEEE Trans. Medical Imaging Mahsa Dadar, Tharick A. Pascoal, Sarinporn Manitsirikul, Karen Misquitta, Vladimir S. Fonov, Maria Carmela Tartaglia, John Breitner, Pedro Rosa-Neto, Owen T. Carmichael, Charles DeCarli, D. Louis Collins
2016	J	`jnl`	An Optimized PatchMatch for multi-scale and multi-feature label fusion. NeuroImage Rémi Giraud, Vinh-Thong Ta, Nicolas Papadakis, José V. Manjón, D. Louis Collins, Pierrick Coupé
2016	J	`jnl`	Cyberinfrastructure for Open Science at the Montreal Neurological Institute. Frontiers Neuroinformatics Samir Das, Tristan Glatard, Christine Rogers, John Saigle, Santiago Paiva, Leigh C. MacIntyre, Mouna Safi-Harb, Marc-Etienne Rousseau, Jordan Stirling, Najmeh Khalili-Mahani, Dave MacFarlane, Penelope Kostopoulos, Pierre Rioux, Cecile Madjar, Xavier Lecours-Boucher, Sandeep Vanamala, Reza Adalat, Zia Mohaddes, Vladimir S. Fonov, Sylvain Milot, Ilana Leppert, Clotilde Degroot, Thomas M. Durcan, Tara Campbell, Jeremy T. Moreau, Alain Dagher, D. Louis Collins, Jason Karamchandani, Amit Bar-Or, Edward A. Fon, Rick Hoge, Sylvain Baillet, Guy Rouleau, Alan C. Evans
2016	J	`jnl`	Development of cortical shape in the human brain from 6 to 24 months of age via a novel measure of shape complexity. NeuroImage Sun Hyung Kim, Ilwoo Lyu, Vladimir S. Fonov, Clement Vachet, Heather Cody Hazlett, Rachel Gimpel Smith, Joseph Piven, Stephen Dager, Robert C. McKinstry, John R. Pruett Jr., Alan C. Evans, D. Louis Collins, Kelly N. Botteron, Robert T. Schultz, Guido Gerig, Martin A. Styner
2016	J	`jnl`	MINC 2.0: A Flexible Format for Multi-Modal Images. Frontiers Neuroinformatics Robert D. Vincent, Peter Neelin, Najmeh Khalili-Mahani, Andrew L. Janke, Vladimir S. Fonov, Steven M. Robbins, Leila Baghdadi, Jason P. Lerch, John G. Sled, Reza Adalat, David MacDonald, Alex P. Zijdenbos, D. Louis Collins, Alan C. Evans
2016	—	`conf`	Towards Augmented Reality Guided Craniotomy Planning in Tumour Resections. MIAR Marta Kersten-Oertel, Ian J. Gerard, Simon Drouin, Kevin Petrecca, Jeffery A. Hall, D. Louis Collins
2016	—	`conf`	Towards a Second Brain Images of Tumours for Evaluation (BITE2) Database. BrainLes@MICCAI Ian J. Gerard, C. Couturier, Marta Kersten-Oertel, Simon Drouin, Dante De Nigris, Jeffery A. Hall, Kelvin Mok, Kevin Petrecca, Tal Arbel, D. Louis Collins
2016	J	`jnl`	User-friendly freehand ultrasound calibration using Lego bricks and automatic registration. Int. J. Comput. Assist. Radiol. Surg. Yiming Xiao, Charles X. B. Yan, Simon Drouin, Dante De Nigris, Anna Kochanowska, D. Louis Collins
2015	J	`jnl`	An analysis of tracking error in image-guided neurosurgery. Int. J. Comput. Assist. Radiol. Surg. Ian J. Gerard, D. Louis Collins
2015	J	`jnl`	Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. NeuroImage David M. Cash, Chris Frost, Leonardo O. Iheme, Devrim Ünay, Melek Kandemir, Jurgen Fripp, Olivier Salvado, Pierrick Bourgeat, Martin Reuter, Bruce Fischl, Marco Lorenzi, Giovanni B. Frisoni, Xavier Pennec, Ronald K. Pierson, Jeffrey L. Gunter, Matthew L. Senjem, Clifford R. Jack Jr., Nicolas Guizard, Vladimir S. Fonov, D. Louis Collins, Marc Modat, M. Jorge Cardoso, Kelvin K. Leung, Hongzhi Wang, Sandhitsu R. Das, Paul A. Yushkevich, Ian B. Malone, Nick C. Fox, Jonathan M. Schott, Sébastien Ourselin
2015	—	`conf`	Atlas-Guided Transcranial Doppler Ultrasound Examination with a Neuro-Surgical Navigation System: Case Study. CLIP@MICCAI Yiming Xiao, Ian J. Gerard, Vladimir S. Fonov, Dante De Nigris, Catherine Therrien, Bérengère Aubert-Broche, Simon Drouin, Anna Kochanowska, Donatella Tampieri, D. Louis Collins
2015	—	`conf`	Augmented Reality for Specific Neurovascular Surgical Tasks. AE-CAI Marta Kersten-Oertel, Ian J. Gerard, Simon Drouin, Kelvin Mok, Denis Sirhan, David S. Sinclair, D. Louis Collins
2015	J	`jnl`	Augmented reality in neurovascular surgery: feasibility and first uses in the operating room. Int. J. Comput. Assist. Radiol. Surg. Marta Kersten-Oertel, Ian Gerard, Simon Drouin, Kelvin Mok, Denis Sirhan, David S. Sinclair, D. Louis Collins
2015	J	`jnl`	Automatic Deformable MR-Ultrasound Registration for Image-Guided Neurosurgery. IEEE Trans. Medical Imaging Hassan Rivaz, Sean Jy-Shyang Chen, D. Louis Collins
2015	J	`jnl`	Automatic SWI Venography Segmentation Using Conditional Random Fields. IEEE Trans. Medical Imaging Silvain Bériault, Yiming Xiao, D. Louis Collins, G. Bruce Pike
2015	J	`jnl`	Deformable registration of preoperative MR, pre-resection ultrasound, and post-resection ultrasound images of neurosurgery. Int. J. Comput. Assist. Radiol. Surg. Hassan Rivaz, D. Louis Collins
2015	J	`jnl`	Diurnal fluctuations in brain volume: Statistical analyses of MRI from large populations. NeuroImage Kunio Nakamura, Robert A. Brown, Sridar Narayanan, D. Louis Collins, Douglas L. Arnold
2015	—	`conf`	Improving Patient Specific Neurosurgical Models with Intraoperative Ultrasound and Augmented Reality Visualizations in a Neuronavigation Environment. CLIP@MICCAI Ian J. Gerard, Marta Kersten-Oertel, Simon Drouin, Jeffery A. Hall, Kevin Petrecca, Dante De Nigris, Tal Arbel, D. Louis Collins
2015	J	`jnl`	Improving recorded volume in mesial temporal lobe by optimizing stereotactic intracranial electrode implantation planning. Int. J. Comput. Assist. Radiol. Surg. Rina Zelmann, Silvain Bériault, Murilo M. Marinho, Kelvin Mok, Jeffery A. Hall, Nicolas Guizard, Claire Haegelen, Andre Olivier, G. Bruce Pike, D. Louis Collins
2015	J	`jnl`	Information processing in computer-assisted interventions: 5th international conference, 2014. Int. J. Comput. Assist. Radiol. Surg. Danail Stoyanov, D. Louis Collins, Ichiro Sakuma, Purang Abolmaesumi, Pierre Jannin
2015	—	`conf`	Interaction-Based Registration Correction for Improved Augmented Reality Overlay in Neurosurgery. AE-CAI Simon Drouin, Marta Kersten-Oertel, D. Louis Collins
2015	J	`jnl`	Multi-contrast unbiased MRI atlas of a Parkinson's disease population. Int. J. Comput. Assist. Radiol. Surg. Yiming Xiao, Vladimir S. Fonov, Silvain Bériault, Fahd Al Subaie, M. Mallar Chakravarty, Abbas F. Sadikot, G. Bruce Pike, D. Louis Collins
2015	J	`jnl`	Patch-based label fusion segmentation of brainstem structures with dual-contrast MRI for Parkinson's disease. Int. J. Comput. Assist. Radiol. Surg. Yiming Xiao, Vladimir S. Fonov, Silvain Bériault, Ian Gerard, Abbas F. Sadikot, G. Bruce Pike, D. Louis Collins
2015	J	`jnl`	Probabilistic Multiple Sclerosis Lesion Classification Based on Modeling Regional Intensity Variability and Local Neighborhood Information. IEEE Trans. Biomed. Eng. Rola Harmouche, Nagesh K. Subbanna, D. Louis Collins, Douglas L. Arnold, Tal Arbel
2015	B	`conf`	Shape index distribution based local surface complexity applied to the human cortex. Image Processing Sun Hyung Kim, Vladimir S. Fonov, D. Louis Collins, Guido Gerig, Martin Andreas Styner
2015	J	`jnl`	Temporal Hierarchical Adaptive Texture CRF for Automatic Detection of Gadolinium-Enhancing Multiple Sclerosis Lesions in Brain MRI. IEEE Trans. Medical Imaging Zahra Karimaghaloo, Hassan Rivaz, Douglas L. Arnold, D. Louis Collins, Tal Arbel
2015	J	`jnl`	The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Trans. Medical Imaging Bjoern H. Menze, András Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin S. Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth R. Gerstner, Marc-André Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Herve Delingette, Çagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, José Antonio Mariz, Raphael Meier, Sérgio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael T. Ryan, Duygu Sarikaya, Lawrence H. Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno J. Sousa, Nagesh K. Subbanna, Gábor Székely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gözde B. Ünal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, Darko Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput
2014	—	`conf`	A Generative Model for Automatic Detection of Resolving Multiple Sclerosis Lesions. BAMBI Colm Elliott, Douglas L. Arnold, D. Louis Collins, Tal Arbel
2014	J	`jnl`	An Evaluation of Depth Enhancing Perceptual Cues for Vascular Volume Visualization in Neurosurgery. IEEE Trans. Vis. Comput. Graph. Marta Kersten-Oertel, Sean Jy-Shyang Chen, D. Louis Collins
2014	—	`conf`	Anatomically Constrained Weak Classifier Fusion for Early Detection of Alzheimer's Disease. MLMI Mawulawoé Komlagan, Vinh-Thong Ta, Xingyu Pan, Jean-Philippe Domenger, D. Louis Collins, Pierrick Coupé
2014	—	`conf`	Augmented Reality in Neurovascular Surgery: First Experiences. AE-CAI Marta Kersten-Oertel, Ian Gerard, Simon Drouin, Kelvin Mok, Denis Sirhan, David S. Sinclair, D. Louis Collins
2014	J	`jnl`	Framework for integrated MRI average of the spinal cord white and gray matter: The MNI-Poly-AMU template. NeuroImage Vladimir S. Fonov, Arnaud Le Troter, Manuel Taso, Benjamin De Leener, G. Lévêque, M. Benhamou, Michaël Sdika, Habib Benali, Pierre-François Pradat, D. Louis Collins, Virginie Callot, Julien Cohen-Adad
2014	—	`ed.`	Information Processing in Computer-Assisted Interventions - 5th International Conference, IPCAI 2014, Fukuoka, Japan, June 28, 2014. Proceedings IPCAI Danail Stoyanov, D. Louis Collins, Ichiro Sakuma, Purang Abolmaesumi, Pierre Jannin
2014	—	`conf`	Is It Possible to Differentiate the Impact of Pediatric Monophasic Demyelinating Disorders and Multiple Sclerosis After a First Episode of Demyelination? STIA Bérengère Aubert-Broche, Vladimir S. Fonov, Katrin Weier, Sridar Narayanan, Douglas L. Arnold, Brenda Banwell, D. Louis Collins
2014	J	`jnl`	Nonlocal Intracranial Cavity Extraction. Int. J. Biomed. Imaging José V. Manjón, Simon F. Eskildsen, Pierrick Coupé, José E. Romero, D. Louis Collins, Montserrat Robles
2014	J	`jnl`	Nonrigid Registration of Ultrasound and MRI Using Contextual Conditioned Mutual Information. IEEE Trans. Medical Imaging Hassan Rivaz, Zahra Karimaghaloo, Vladimir S. Fonov, D. Louis Collins
2014	—	`conf`	Optimized PatchMatch for Near Real Time and Accurate Label Fusion. MICCAI (3) Vinh-Thong Ta, Rémi Giraud, D. Louis Collins, Pierrick Coupé
2014	J	`jnl`	Self-similarity weighted mutual information: A new nonrigid image registration metric. Medical Image Anal. Hassan Rivaz, Zahra Karimaghaloo, D. Louis Collins
2014	—	`conf`	Simulation of Ultrasound Images for Validation of MR to Ultrasound Registration in Neurosurgery. AE-CAI Hassan Rivaz, D. Louis Collins
2014	—	`conf`	SymBA: Diffeomorphic Registration Based on Gradient Orientation Alignment and Boundary Proximity of Sparsely Selected Voxels. WBIR Dante De Nigris, D. Louis Collins, Tal Arbel
2013	J	`jnl`	A new method for structural volume analysis of longitudinal brain MRI data and its application in studying the growth trajectories of anatomical brain structures in childhood. NeuroImage Bérengère Aubert-Broche, Vladimir S. Fonov, Daniel García-Lorenzo, Abderazzak Mouiha, Nicolas Guizard, Pierrick Coupé, Simon F. Eskildsen, D. Louis Collins
2013	—	`conf`	Adaptive Voxel, Texture and Temporal Conditional Random Fields for Detection of Gad-Enhancing Multiple Sclerosis Lesions in Brain MRI. MICCAI (3) Zahra Karimaghaloo, Hassan Rivaz, Douglas L. Arnold, D. Louis Collins, Tal Arbel
2013	J	`jnl`	Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson's disease. Int. J. Comput. Assist. Radiol. Surg. Claire Haegelen, Pierrick Coupé, Vladimir S. Fonov, Nicolas Guizard, Pierre Jannin, Xavier Morandi, D. Louis Collins
2013	—	`conf`	Automatic Markov Random Field Segmentation of Susceptibility-Weighted MR Venography. CLIP Silvain Bériault, Marika Archambault-Wallenburg, Abbas F. Sadikot, D. Louis Collins, G. Bruce Pike
2013	—	`conf`	Automatic Optimization of Depth Electrode Trajectory Planning. CLIP Rina Zelmann, Silvain Bériault, Kelvin Mok, Claire Haegelen, Jeffery A. Hall, G. Bruce Pike, Andre Olivier, D. Louis Collins
2013	—	`conf`	Cortical Surface Analysis of Multi-contrast MR Data to Improve Detection of Cortical Pathology in Multiple Sclerosis. MBIA Marika Archambault-Wallenburg, Douglas L. Arnold, Sridar Narayanan, G. Bruce Pike, D. Louis Collins
2013	J	`jnl`	Evidence for a cerebral cortical thickness network anti-correlated with amygdalar volume in healthy youths: Implications for the neural substrates of emotion regulation. NeuroImage Matthew D. Albaugh, Simon Ducharme, D. Louis Collins, Kelly N. Botteron, Robert R. Althoff, Alan C. Evans, Sherif Karama, James J. Hudziak
2013	J	`jnl`	Fast rigid registration of pre-operative magnetic resonance images to intra-operative ultrasound for neurosurgery based on high confidence gradient orientations. Int. J. Comput. Assist. Radiol. Surg. Dante De Nigris, D. Louis Collins, Tal Arbel
2013	—	`conf`	Hierarchical Probabilistic Gabor and MRF Segmentation of Brain Tumours in MRI Volumes. MICCAI (1) Nagesh K. Subbanna, Doina Precup, D. Louis Collins, Tal Arbel
2013	J	`jnl`	Multi-site study of surgical practice in neurosurgery based on surgical process models. J. Biomed. Informatics Germain Forestier, Florent Lalys, Laurent Riffaud, D. Louis Collins, Jürgen Meixensberger, Shafik N. Wassef, Thomas Neumuth, Benoît Goulet, Pierre Jannin
2013	J	`jnl`	Prediction of Alzheimer's disease in subjects with mild cognitive impairment from the ADNI cohort using patterns of cortical thinning. NeuroImage Simon F. Eskildsen, Pierrick Coupé, Daniel García-Lorenzo, Vladimir S. Fonov, Jens C. Pruessner, D. Louis Collins
2013	J	`jnl`	Review of automatic segmentation methods of multiple sclerosis white matter lesions on conventional magnetic resonance imaging. Medical Image Anal. Daniel García-Lorenzo, Simon J. Francis, Sridar Narayanan, Douglas L. Arnold, D. Louis Collins
2013	J	`jnl`	Temporally Consistent Probabilistic Detection of New Multiple Sclerosis Lesions in Brain MRI. IEEE Trans. Medical Imaging Colm Elliott, Douglas L. Arnold, D. Louis Collins, Tal Arbel
2013	J	`jnl`	The state of the art of visualization in mixed reality image guided surgery. Comput. Medical Imaging Graph. Marta Kersten-Oertel, Pierre Jannin, D. Louis Collins
2013	—	`conf`	Volume Visualization for Neurovascular Augmented Reality Surgery. AE-CAI Marta Kersten-Oertel, Simon Drouin, Sean Jy-Shyang Chen, D. Louis Collins
2013	J	`jnl`	Volumetric analysis of medial temporal lobe structures in brain development from childhood to adolescence. NeuroImage Shiyan Hu, Jens C. Pruessner, Pierrick Coupé, D. Louis Collins
2012	J	`jnl`	A CANDLE for a deeper in vivo insight. Medical Image Anal. Pierrick Coupé, Martin Munz, José V. Manjón, Edward S. Ruthazer, D. Louis Collins
2012	—	`conf`	A New Framework for Analyzing Structural Volume Changes of Longitudinal Brain MRI Data. STIA Bérengère Aubert-Broche, Vladimir S. Fonov, Daniel García-Lorenzo, Abderazzak Mouiha, Nicolas Guizard, Pierrick Coupé, Simon F. Eskildsen, D. Louis Collins
2012	—	`conf`	A Prospective Evaluation of Computer-Assisted Deep Brain Stimulation Trajectory Planning. CLIP Silvain Bériault, Simon Drouin, Abbas F. Sadikot, Yiming Xiao, D. Louis Collins, G. Bruce Pike
2012	J	`jnl`	A multi-modal approach to computer-assisted deep brain stimulation trajectory planning. Int. J. Comput. Assist. Radiol. Surg. Silvain Bériault, Fahd Al Subaie, D. Louis Collins, Abbas F. Sadikot, G. Bruce Pike
2012	—	`conf`	Atlas-Based Segmentation of the Subthalamic Nucleus, Red Nucleus, and Substantia Nigra for Deep Brain Stimulation by Incorporating Multiple MRI Contrasts. IPCAI Yiming Xiao, Lara Bailey, M. Mallar Chakravarty, Silvain Bériault, Abbas F. Sadikot, G. Bruce Pike, D. Louis Collins
2012	—	`conf`	Atlas-based clustering of sulcal patterns - Application to the left inferior frontal sulcus. ISBI Olivier Coulon, Vladimir S. Fonov, Jean-François Mangin, D. Louis Collins
2012	—	`conf`	Augmented Reality Visualization for Guidance in Neurovascular Surgery. MMVR Marta Kersten-Oertel, Sean Jy-Shyang Chen, Simon Drouin, David S. Sinclair, D. Louis Collins
2012	J	`jnl`	Automatic Detection of Gadolinium-Enhancing Multiple Sclerosis Lesions in Brain MRI Using Conditional Random Fields. IEEE Trans. Medical Imaging Zahra Karimaghaloo, Mohak Shah, Simon J. Francis, Douglas L. Arnold, D. Louis Collins, Tal Arbel
2012	J	`jnl`	BEaST: Brain extraction based on nonlocal segmentation technique. NeuroImage Simon F. Eskildsen, Pierrick Coupé, Vladimir S. Fonov, José V. Manjón, Kelvin K. Leung, Nicolas Guizard, Shafik N. Wassef, Lasse Riis Østergaard, D. Louis Collins
2012	J	`jnl`	Brain templates and atlases. NeuroImage Alan C. Evans, Andrew L. Janke, D. Louis Collins, Sylvain Baillet
2012	J	`jnl`	Comparing two approaches to rigid registration of three-dimensional ultrasound and magnetic resonance images for neurosurgery. Int. J. Comput. Assist. Radiol. Surg. Laurence Mercier, Vladimir S. Fonov, Claire Haegelen, Rolando Del Maestro, Kevin Petrecca, D. Louis Collins
2012	J	`jnl`	DVV: A Taxonomy for Mixed Reality Visualization in Image Guided Surgery. IEEE Trans. Vis. Comput. Graph. Marta Kersten-Oertel, Pierre Jannin, D. Louis Collins
2012	—	`conf`	Fast and Robust Registration Based on Gradient Orientations: Case Study Matching Intra-operative Ultrasound to Pre-operative MRI in Neurosurgery. IPCAI Dante De Nigris, D. Louis Collins, Tal Arbel
2012	J	`jnl`	Genetic influences on thinning of the cerebral cortex during development. NeuroImage I. L. C. van Soelen, Rachel M. Brouwer, G. Caroline M. van Baal, Hugo G. Schnack, Jiska S. Peper, D. Louis Collins, Alan C. Evans, René S. Kahn, Dorret I. Boomsma, Hilleke E. Hulshoff Pol
2012	—	`conf`	Hierarchical Conditional Random Fields for Detection of Gad-Enhancing Lesions in Multiple Sclerosis. MICCAI (2) Zahra Karimaghaloo, Douglas L. Arnold, D. Louis Collins, Tal Arbel
2012	J	`jnl`	Multi-Modal Image Registration Based on Gradient Orientations of Minimal Uncertainty. IEEE Trans. Medical Imaging Dante De Nigris, D. Louis Collins, Tal Arbel
2012	J	`jnl`	New methods for MRI denoising based on sparseness and self-similarity. Medical Image Anal. José V. Manjón, Pierrick Coupé, Antonio Buades, D. Louis Collins, Montserrat Robles
2012	—	`conf`	Self-similarity Weighted Mutual Information: A New Nonrigid Image Registration Metric. MICCAI (3) Hassan Rivaz, D. Louis Collins
2012	J	`jnl`	Simultaneous segmentation and grading of anatomical structures for patient's classification: Application to Alzheimer's disease. NeuroImage Pierrick Coupé, Simon F. Eskildsen, José V. Manjón, Vladimir S. Fonov, D. Louis Collins
2012	—	`conf`	Spatio-temporal Regularization for Longitudinal Registration to an Unbiased 3D Individual Template. STIA Nicolas Guizard, Vladimir S. Fonov, Daniel García-Lorenzo, Bérengère Aubert-Broche, Simon F. Eskildsen, D. Louis Collins
2012	—	`conf`	Towards Computer-Assisted Deep Brain Stimulation Targeting with Multiple Active Contacts. MICCAI (1) Silvain Bériault, Yiming Xiao, Lara Bailey, D. Louis Collins, Abbas F. Sadikot, G. Bruce Pike
2012	J	`jnl`	Ultrasound-CT registration of vertebrae without reconstruction. Int. J. Comput. Assist. Radiol. Surg. Charles X. B. Yan, Benoît Goulet, Donatella Tampieri, D. Louis Collins
2012	J	`jnl`	Validation of a hybrid Doppler ultrasound vessel-based registration algorithm for neurosurgery. Int. J. Comput. Assist. Radiol. Surg. Sean Jy-Shyang Chen, Ingerid Reinertsen, Pierrick Coupé, Charles X. B. Yan, Laurence Mercier, Rolando Del Maestro, D. Louis Collins
2012	J	`jnl`	Validation of automated ultrasound-CT registration of vertebrae. Int. J. Comput. Assist. Radiol. Surg. Charles X. B. Yan, Benoît Goulet, Sean Jy-Shyang Chen, Donatella Tampieri, D. Louis Collins
2012	—	`conf`	Visualizing the path of blood flow in static vessel images for image guided surgery of cerebral arteriovenous malformations. Image-Guided Procedures Sean Jy-Shyang Chen, Marta Kersten-Oertel, Simon Drouin, D. Louis Collins
2011	—	`conf`	A Realistic Test and Development Environment for Mixed Reality in Neurosurgery. AE-CAI Simon Drouin, Marta Kersten-Oertel, Sean Jy-Shyang Chen, D. Louis Collins
2011	—	`conf`	Adapted MRF Segmentation of Multiple Sclerosis Lesions Using Local Contextual Information. MIUA Nagesh K. Subbanna, Simon J. Francis, Doina Precup, D. Louis Collins, Douglas L. Arnold, Tal Arbel
2011	J	`jnl`	An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space). NeuroImage Stephen Frey, Deepak N. Pandya, M. Mallar Chakravarty, Lara Bailey, Michael Petrides, D. Louis Collins
2011	J	`jnl`	Appearance-based modeling for segmentation of hippocampus and amygdala using multi-contrast MR imaging. NeuroImage Shiyan Hu, Pierrick Coupé, Jens C. Pruessner, D. Louis Collins
2011	J	`jnl`	Evaluating intensity normalization on MRIs of human brain with multiple sclerosis. Medical Image Anal. Mohak Shah, Yiming Xiao, Nagesh K. Subbanna, Simon J. Francis, Douglas L. Arnold, D. Louis Collins, Tal Arbel
2011	J	`jnl`	Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim
2011	J	`jnl`	Multivariate analysis of MRI data for Alzheimer's disease, mild cognitive impairment and healthy controls. NeuroImage Eric Westman, Andrew Simmons, Yi Zhang, Sebastian Muehlboeck, Catherine Tunnard, Yawu Liu, D. Louis Collins, Alan C. Evans, Patrizia Mecocci, Bruno Vellas, Magda Tsolaki, Iwona Kloszewska, Hilkka Soininen, Simon Lovestone, Christian Spenger, Lars-Olof Wahlund
2011	J	`jnl`	New prototype neuronavigation system based on preoperative imaging and intraoperative freehand ultrasound: system description and validation. Int. J. Comput. Assist. Radiol. Surg. Laurence Mercier, Rolando Del Maestro, Kevin Petrecca, Anna Kochanowska, Simon Drouin, Charles X. B. Yan, Andrew L. Janke, Sean Jy-Shyang Chen, D. Louis Collins
2011	J	`jnl`	Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. NeuroImage Pierrick Coupé, José V. Manjón, Vladimir S. Fonov, Jens C. Pruessner, Montserrat Robles, D. Louis Collins
2011	J	`jnl`	Regional brain atrophy in children with multiple sclerosis. NeuroImage Bérengère Aubert-Broche, Vladimir S. Fonov, R. Ghassemi, Sridar Narayanan, Douglas L. Arnold, Brenda Banwell, John G. Sled, D. Louis Collins
2011	—	`conf`	Simultaneous Segmentation and Grading of Hippocampus for Patient Classification with Alzheimer's Disease. MICCAI (3) Pierrick Coupé, Simon F. Eskildsen, José V. Manjón, Vladimir S. Fonov, D. Louis Collins
2011	—	`conf`	Spatial intensity prior correction for tissue segmentation in the developing human brain. ISBI Sun Hyung Kim, Vladimir S. Fonov, Joseph Piven, John H. Gilmore, Clement Vachet, Guido Gerig, D. Louis Collins, Martin Styner
2011	J	`jnl`	Towards accurate, robust and practical ultrasound-CT registration of vertebrae for image-guided spine surgery. Int. J. Comput. Assist. Radiol. Surg. Charles X. B. Yan, Benoît Goulet, Julie Pelletier, Sean Jy-Shyang Chen, Donatella Tampieri, D. Louis Collins
2011	J	`jnl`	Trimmed-Likelihood Estimation for Focal Lesions and Tissue Segmentation in Multisequence MRI for Multiple Sclerosis. IEEE Trans. Medical Imaging Daniel García-Lorenzo, Sylvain Prima, Douglas L. Arnold, D. Louis Collins, Christian Barillot
2011	J	`jnl`	Unbiased average age-appropriate atlases for pediatric studies. NeuroImage Vladimir S. Fonov, Alan C. Evans, Kelly N. Botteron, C. Robert Almli, Robert C. McKinstry, D. Louis Collins
2010	—	`conf`	An Anthropomorphic Polyvinyl Alcohol Triple-Modality Brain Phantom Based on Colin27. MICCAI (2) Sean Jy-Shyang Chen, Pierre Hellier, Jean-Yves Gauvrit, Maud Marchal, Xavier Morandi, D. Louis Collins
2010	J	`jnl`	An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images. Medical Image Anal. Pierre Hellier, Pierrick Coupé, Xavier Morandi, D. Louis Collins
2010	—	`conf`	Bayesian Classification of Multiple Sclerosis Lesions in Longitudinal MRI Using Subtraction Images. MICCAI (2) Colm Elliott, Simon J. Francis, Douglas L. Arnold, D. Louis Collins, Tal Arbel
2010	J	`jnl`	Corrigendum to "Gradient distortions in MRI: Characterizing and correcting for their effects on SIENA-generated measures of brain volume change" [NeuroImage 49 (2010) 1601-1611]. NeuroImage Zografos Caramanos, Vladimir S. Fonov, Simon J. Francis, Sridar Narayanan, G. Bruce Pike, D. Louis Collins, Douglas L. Arnold
2010	—	`conf`	DVV: Towards a Taxonomy for Mixed Reality Visualization in Image Guided Surgery. MIAR Marta Kersten-Oertel, Pierre Jannin, D. Louis Collins
2010	—	`conf`	Detection of Gad-Enhancing Lesions in Multiple Sclerosis Using Conditional Random Fields. MICCAI (3) Zahra Karimaghaloo, Mohak Shah, Simon J. Francis, Douglas L. Arnold, D. Louis Collins, Tal Arbel
2010	J	`jnl`	Evaluation of automated techniques for the quantification of grey matter atrophy in patients with multiple sclerosis. NeuroImage Mishkin Derakhshan, Zografos Caramanos, Paul S. Giacomini, Sridar Narayanan, Josefina Maranzano, Simon J. Francis, Douglas L. Arnold, D. Louis Collins
2010	—	`conf`	Exploring Cortical Folding Pattern Variability Using Local Image Features. MCV Rishi Rajalingham, Matthew Toews, D. Louis Collins, Tal Arbel
2010	J	`jnl`	Feature-based morphometry: Discovering group-related anatomical patterns. NeuroImage Matthew Toews, William M. Wells III, D. Louis Collins, Tal Arbel
2010	J	`jnl`	Gradient distortions in MRI: Characterizing and correcting for their effects on SIENA-generated measures of brain volume change. NeuroImage Zografos Caramanos, Vladimir S. Fonov, Simon J. Francis, Sridar Narayanan, G. Bruce Pike, D. Louis Collins, Douglas L. Arnold
2010	—	`conf`	Hierarchical Multimodal Image Registration Based on Adaptive Local Mutual Information. MICCAI (2) Dante De Nigris, Laurence Mercier, Rolando Del Maestro, D. Louis Collins, Tal Arbel
2010	—	`conf`	Improved Precision in the Measurement of Longitudinal Global and Regional Volumetric Changes via a Novel MRI Gradient Distortion Characterization and Correction Technique. MIAR Vladimir S. Fonov, Andrew L. Janke, Zografos Caramanos, Douglas L. Arnold, Sridar Narayanan, G. Bruce Pike, D. Louis Collins
2010	J	`jnl`	MRI Superresolution Using Self-Similarity and Image Priors. Int. J. Biomed. Imaging José V. Manjón, Pierrick Coupé, Antonio Buades, D. Louis Collins, Montserrat Robles
2010	J	`jnl`	Non-local MRI upsampling. Medical Image Anal. José V. Manjón, Pierrick Coupé, Antonio Buades, Vladimir S. Fonov, D. Louis Collins, Montserrat Robles
2010	—	`conf`	Nonlocal Patch-Based Label Fusion for Hippocampus Segmentation. MICCAI (3) Pierrick Coupé, José V. Manjón, Vladimir S. Fonov, Jens C. Pruessner, Montserrat Robles, D. Louis Collins
2010	—	`conf`	Optimal Gaussian Mixture Models of Tissue Intensities in Brain MRI of Patients with Multiple-Sclerosis. MLMI Yiming Xiao, Mohak Shah, Simon J. Francis, Douglas L. Arnold, Tal Arbel, D. Louis Collins
2010	—	`conf`	Robust 3D Reconstruction and Mean-Shift Clustering of Motoneurons from Serial Histological Images. MIAR Nicolas Guizard, Pierrick Coupé, Nicolas Stifani, Stefano Stifani, D. Louis Collins
2010	J	`jnl`	Robust Rician noise estimation for MR images. Medical Image Anal. Pierrick Coupé, José V. Manjón, Elias Gedamu, Douglas L. Arnold, Montserrat Robles, D. Louis Collins
2010	—	`conf`	Segmentation of Cortical MS Lesions on MRI Using Automated Laminar Profile Shape Analysis. MICCAI (3) Christine L. Tardif, D. Louis Collins, Simon F. Eskildsen, John B. Richardson, G. Bruce Pike
2010	J	`jnl`	Towards accurate, automatic segmentation of the hippocampus and amygdala from MRI by augmenting ANIMAL with a template library and label fusion. NeuroImage D. Louis Collins, Jens C. Pruessner
2009	—	`conf`	A Comparative Study of Monoscopic and Stereoscopic Display for a Probe-Positioning Task. MMVR Guangyu Wang, Laurence Mercier, D. Louis Collins, Jeremy R. Cooperstock
2009	—	`conf`	An Object-Based Method for Rician Noise Estimation in MR Images. MICCAI (1) Pierrick Coupé, José V. Manjón, Elias Gedamu, Douglas L. Arnold, Montserrat Robles, D. Louis Collins
2009	—	`conf`	Automatically Learning Cortical Folding Patterns. ISBI Matthew Toews, D. Louis Collins, Tal Arbel
2009	J	`jnl`	Clustering of atlas-defined cortical regions based on relaxation times and proton density. NeuroImage Bérengère Aubert-Broche, Christophe Grova, G. Bruce Pike, D. Louis Collins
2009	J	`jnl`	Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage Arno Klein, Jesper L. R. Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey
2009	—	`conf`	Feature-Based Morphometry. MICCAI (1) Matthew Toews, William M. Wells III, D. Louis Collins, Tal Arbel
2009	J	`jnl`	Motion correction of multi-frame PET data in neuroreceptor mapping: Simulation based validation. NeuroImage Nicolas Costes, Alain Dagher, Kevin Larcher, Alan C. Evans, D. Louis Collins, Anthonin Reilhac
2009	B	`conf`	Multi-channel MRI segmentation with graph cuts using spectral gradient and multidimensional Gaussian mixture model. Image Processing Jérémy Lecoeur, Jean-Christophe Ferré, D. Louis Collins, Sean Patrick Morrisey, Christian Barillot
2009	—	`conf`	Multiple Sclerosis Lesion Segmentation Using an Automatic Multimodal Graph Cuts. MICCAI (1) Daniel García-Lorenzo, Jérémy Lecoeur, Douglas L. Arnold, D. Louis Collins, Christian Barillot
2009	J	`jnl`	Relating one-year cognitive change in mild cognitive impairment to baseline MRI features. NeuroImage Simon Duchesne, Anna Caroli, Cristina Geroldi, D. Louis Collins, Giovanni B. Frisoni
2009	J	`jnl`	Sensitivity of voxel-based morphometry analysis to choice of imaging protocol at 3 T. NeuroImage Christine L. Tardif, D. Louis Collins, G. Bruce Pike
2009	—	`conf`	Towards Accurate, Automatic Segmentation of the Hippocampus and Amygdala from MRI. MICCAI (1) D. Louis Collins, Jens C. Pruessner
2008	J	`jnl`	A geometric flow for segmenting vasculature in proton-density weighted MRI. Medical Image Anal. Maxime Descoteaux, D. Louis Collins, Kaleem Siddiqi
2008	—	`conf`	Acoustic shadows detection, application to accurate reconstruction of 3D intraoperative ultrasound. ISBI Pierre Hellier, Pierrick Coupé, Pierre Meyer, Xavier Morandi, D. Louis Collins
2008	—	`conf`	Deformable Ultrasound Registration without Reconstruction. MICCAI (2) Rupert Brooks, D. Louis Collins, Xavier Morandi, Tal Arbel
2008	—	`conf`	Development of FMRI techniques for planning in functional neurosurgery for Parkinson's disease. ISBI M. Mallar Chakravarty, Pedro Rosa-Neto, Scott Broadbent, Alan C. Evans, D. Louis Collins
2008	—	`conf`	Human Brain Myelination from Birth to 4.5 Years. MICCAI (2) Bérengère Aubert-Broche, Vladimir S. Fonov, Ilana Leppert, G. Bruce Pike, D. Louis Collins
2008	—	`conf`	MRI inter-packet movement correction for images acquired with non-complementary data. ISBI Elias Gedamu, Abraham Gedamu, Douglas L. Arnold, D. Louis Collins
2008	J	`jnl`	MRI-Based Automated Computer Classification of Probable AD Versus Normal Controls. IEEE Trans. Medical Imaging Simon Duchesne, Anna Caroli, Cristina Geroldi, Christian Barillot, Giovanni B. Frisoni, D. Louis Collins
2008	—	`conf`	Three-dimensional reconstruction of serial histological mouse brain sections. ISBI M. Mallar Chakravarty, Barry J. Bedell, Simone P. Zehntner, Alan C. Evans, D. Louis Collins
2008	J	`jnl`	Towards a validation of atlas warping techniques. Medical Image Anal. M. Mallar Chakravarty, Abbas F. Sadikot, Jürgen Germann, Gilles Bertrand, D. Louis Collins
2007	J	`jnl`	Clinical validation of vessel-based registration for correction of brain-shift. Medical Image Anal. Ingerid Reinertsen, Frank Lindseth, Geirmund Unsgård, D. Louis Collins
2007	J	`jnl`	Joint level-set shape modeling and appearance modeling for brain structure segmentation. NeuroImage Shiyan Hu, D. Louis Collins
2007	J	`jnl`	Validation of vessel-based registration for correction of brain shift. Medical Image Anal. Ingerid Reinertsen, Maxime Descoteaux, Kaleem Siddiqi, D. Louis Collins
2007	J	`jnl`	Voxel-based analysis of the evolution of magnetization transfer ratio to quantify remyelination and demyelination with histopathological validation in a multiple sclerosis lesion. NeuroImage J. T. Chen, T. Kuhlmann, G. H. Jansen, D. Louis Collins, H. L. Atkins, M. S. Freedman, P. W. O'Connor, Douglas L. Arnold, Canadian MS/BMT Study Group
2006	—	`conf`	A Statistical Parts-Based Appearance Model of Inter-subject Variability. MICCAI (1) Matthew Toews, D. Louis Collins, Tal Arbel
2006	J	`jnl`	A new improved version of the realistic digital brain phantom. NeuroImage Bérengère Aubert-Broche, Alan C. Evans, D. Louis Collins
2006	—	`conf`	Automated Analysis of Multi Site MRI Phantom Data for the NIHPD Project. MICCAI (2) Luke Fu, Vladimir S. Fonov, G. Bruce Pike, Alan C. Evans, D. Louis Collins
2006	—	`conf`	Bayesian MS Lesion Classification Modeling Regional and Local Spatial Information. ICPR (3) Rola Harmouche, D. Louis Collins, Douglas L. Arnold, Simon J. Francis, Tal Arbel
2006	J	`jnl`	Gray and white matter density changes in monozygotic and same-sex dizygotic twins discordant for schizophrenia using voxel-based morphometry. NeuroImage Hilleke E. Hulshoff Pol, Hugo G. Schnack, René C. W. Mandl, Rachel G. H. Brans, Neeltje E. M. van Haren, Wim F. C. Baaré, Clarine J. van Oel, D. Louis Collins, Alan C. Evans, René S. Kahn
2006	J	`jnl`	MR-based neurological disease classification methodology: Application to lateralization of seizure focus in temporal lobe epilepsy. NeuroImage Simon Duchesne, Neda Bernasconi, Andrea Bernasconi, D. Louis Collins
2006	—	`conf`	Realistic Simulated MRI and SPECT Databases. MICCAI (1) Bérengère Aubert-Broche, Christophe Grova, Anthonin Reilhac, Alan C. Evans, D. Louis Collins
2006	—	`conf`	Symmetric Atlasing and Model Based Segmentation: An Application to the Hippocampus in Older Adults. MICCAI (2) Günther Grabner, Andrew L. Janke, Marc M. Budge, David Smith, Jens C. Pruessner, D. Louis Collins
2006	J	`jnl`	The creation of a brain atlas for image guided neurosurgery using serial histological data. NeuroImage M. Mallar Chakravarty, Gilles Bertrand, Charles P. Hodge, Abbas F. Sadikot, D. Louis Collins
2006	—	`conf`	Towards a Multi-modal Atlas for Neurosurgical Planning. MICCAI (2) M. Mallar Chakravarty, Abbas F. Sadikot, Sanjay Mongia, Gilles Bertrand, D. Louis Collins
2006	J	`jnl`	Twenty New Digital Brain Phantoms for Creation of Validation Image Data Bases. IEEE Trans. Medical Imaging Bérengère Aubert-Broche, M. Griffin, G. Bruce Pike, Alan C. Evans, D. Louis Collins
2005	—	`conf`	Anatomical and Electrophysiological Validation of an Atlas for Neurosurgical Planning. MICCAI (2) M. Mallar Chakravarty, Abbas F. Sadikot, Jürgen Germann, Gilles Bertrand, D. Louis Collins
2005	J	`jnl`	Hippocampal shape analysis using medial surfaces. NeuroImage Sylvain Bouix, Jens C. Pruessner, D. Louis Collins, Kaleem Siddiqi
2005	J	`jnl`	Local magnetization transfer ratio signal inhomogeneity is related to subsequent change in MTR in lesions and normal-appearing white-matter of multiple sclerosis patients. NeuroImage J. T. Chen, D. Louis Collins, M. S. Freedman, H. L. Atkins, Douglas L. Arnold, Canadian MS/BMT Study Group
2005	—	`conf`	Maximum a Posteriori Local Histogram Estimation for Image Registration. MICCAI (2) Matthew Toews, D. Louis Collins, Tal Arbel
2005	A	`conf`	Predicting Clinical Variable from MRI Features: Application to MMSE in MCI. MICCAI Simon Duchesne, Anna Caroli, Cristina Geroldi, Giovanni B. Frisoni, D. Louis Collins
2004	—	`conf`	A Multi-scale Geometric Flow for Segmenting Vasculature in MRI. ECCV Workshops CVAMIA and MMBIA Maxime Descoteaux, D. Louis Collins, Kaleem Siddiqi
2004	J	`jnl`	Brain morphometry using 3D moment invariants. Medical Image Anal. Jean-François Mangin, Fabrice Poupon, Edouard Duchesnay, Denis Rivière, Arnaud Cachia, D. Louis Collins, Alan C. Evans, Jean Régis
2004	J	`jnl`	Focal white matter density changes in schizophrenia: reduced inter-hemispheric connectivity. NeuroImage Hilleke E. Hulshoff Pol, Hugo G. Schnack, René C. W. Mandl, Wiepke Cahn, D. Louis Collins, Alan C. Evans, René S. Kahn
2004	—	`conf`	Geometric Flows for Segmenting Vasculature in MRI: Theory and Validation. MICCAI (1) Maxime Descoteaux, D. Louis Collins, Kaleem Siddiqi
2004	J	`jnl`	Object-based morphometry of the cerebral cortex. IEEE Trans. Medical Imaging Jean-François Mangin, Denis Rivière, Arnaud Cachia, Edouard Duchesnay, Yann Cointepas, Dimitri Papadopoulos-Orfanos, D. Louis Collins, Alan C. Evans, Jean Régis
2004	J	`jnl`	Relating neocortical pathology to disability progression in multiple sclerosis using MRI. NeuroImage J. T. Chen, Sridar Narayanan, D. Louis Collins, Steve M. Smith, Paul M. Matthews, Douglas L. Arnold
2004	—	`conf`	Temporal Lobe Epilepsy Surgical Outcome Prediction. MICCAI (2) Simon Duchesne, Neda Bernasconi, Andrea Bernasconi, D. Louis Collins
2004	J	`jnl`	Tuning and comparing spatial normalization methods. Medical Image Anal. Steven M. Robbins, Alan C. Evans, D. Louis Collins, Sue Whitesides
2004	—	`conf`	Vessel Driven Correction of Brain Shift. MICCAI (2) Ingerid Reinertsen, Maxime Descoteaux, Simon Drouin, Kaleem Siddiqi, D. Louis Collins
2004	J	`jnl`	Whole-brain voxel-based statistical analysis of gray matter and white matter in temporal lobe epilepsy. NeuroImage Neda Bernasconi, Simon Duchesne, Andrew L. Janke, Jason P. Lerch, D. Louis Collins, Andrea Bernasconi
2003	—	`conf`	3D Moment Invariant Based Morphometry. MICCAI (2) Jean-François Mangin, Fabrice Poupon, Denis Rivière, Arnaud Cachia, D. Louis Collins, Alan C. Evans, Jean Régis
2003	J	`jnl`	Automated detection of focal cortical dysplasia lesions using computational models of their MRI characteristics and texture analysis. NeuroImage Samson B. Antel, D. Louis Collins, Neda Bernasconi, Frederick Andermann, Rajjan Shinghal, Robert E. Kearney, Douglas L. Arnold, Andrea Bernasconi
2003	—	`conf`	Multivariate Statistics for Detection of MS Activity in Serial Multimodal MR Images. MICCAI (1) Sylvain Prima, Douglas L. Arnold, D. Louis Collins
2003	—	`conf`	Object-Based Strategy for Morphometry of the Cerebral Cortex. IPMI Jean-François Mangin, Denis Rivière, Arnaud Cachia, Dimitri Papadopoulos-Orfanos, D. Louis Collins, Alan C. Evans, Jean Régis
2003	J	`jnl`	Retrospective Evaluation of Inter-subject Brain Registration. IEEE Trans. Medical Imaging Pierre Hellier, Christian Barillot, Isabelle Corouge, Bernard Gibaud, Georges Le Goualher, D. Louis Collins, Alan C. Evans, Grégoire Malandain, Nicholas Ayache, Gary E. Christensen, Hans J. Johnson
2003	—	`conf`	Temporal Lobe Epilepsy Lateralization Based on MR Image Intensity and Registration Features. MICCAI (1) Simon Duchesne, Neda Bernasconi, Andrew L. Janke, Andrea Bernasconi, D. Louis Collins
2003	—	`conf`	The Creation of a Brain Atlas for Image Guided Neurosurgery Using Serial Histological Data. MICCAI (1) M. Mallar Chakravarty, Gilles Bertrand, Maxime Descoteaux, Abbas F. Sadikot, D. Louis Collins
2003	—	`conf`	Tuning and Comparing Spatial Normalization Methods. MICCAI (2) Steven M. Robbins, Alan C. Evans, D. Louis Collins, Sue Whitesides
2002	J	`jnl`	Appearance-Based Segmentation of Medial Temporal Lobe Structures. NeuroImage Simon Duchesne, Jens C. Pruessner, D. Louis Collins
2002	J	`jnl`	Computational Models of MRI Characteristics of Focal Cortical Dysplasia Improve Lesion Detection. NeuroImage Samson B. Antel, Andrea Bernasconi, Neda Bernasconi, D. Louis Collins, Robert E. Kearney, Rajjan Shinghal, Douglas L. Arnold
2002	—	`conf`	On the Classification of Temporal Lobe Epilepsy Using MR Image Appearance. ICPR (1) Simon Duchesne, Neda Bernasconi, Andrea Bernasconi, D. Louis Collins
2002	—	`conf`	Statistical Analysis of Longitudinal MRI Data: Applications for Detection of Disease Activity in MS. MICCAI (1) Sylvain Prima, Nicholas Ayache, Andrew L. Janke, Simon J. Francis, Douglas L. Arnold, D. Louis Collins
2001	J	`jnl`	A Unified Statistical Approach to Deformation-Based Morphometry. NeuroImage Moo K. Chung, Keith J. Worsley, Tomás Paus, C. Cherif, D. Louis Collins, Jay N. Giedd, Judith L. Rapoport, Alan C. Evans
2001	A	`conf`	Analysis of 3D Deformation Fields for Appearance-Based Segmentation. MICCAI Simon Duchesne, D. Louis Collins
2001	J	`jnl`	Application of Information Technology: A Four-Dimensional Probabilistic Atlas of the Human Brain. J. Am. Medical Informatics Assoc. John C. Mazziotta, Arthur W. Toga, Alan C. Evans, Peter T. Fox, Jack L. Lancaster, Karl Zilles, Roger P. Woods, Tomás Paus, Gregory Simpson, G. Bruce Pike, Colin J. Holmes, D. Louis Collins, Paul M. Thompson, David MacDonald, Marco Iacoboni, Thorsten Schormann, Katrin Amunts, Nicola Palomero-Gallagher, Stefan Geyer, Larry Parsons, Katherine L. Narr, Noor Kabani, Georges Le Goualher, Jordan Feidler, Kenneth P. Smith, Dorret I. Boomsma, Hilleke E. Hulshoff Pol, Tyrone D. Cannon, Ryuta Kawashima, Bernard Mazoyer
2001	—	`conf`	Automated Estimation of Brain Volume in Multiple Sclerosis with BICCR. IPMI D. Louis Collins, Johan Montagnat, Alex P. Zijdenbos, Alan C. Evans, Douglas L. Arnold
2001	A	`conf`	Automatic Non-linear MRI-Ultrasound Registration for the Correction of Intra-operative Brain Deformations. MICCAI Tal Arbel, Xavier Morandi, Roch M. Comeau, D. Louis Collins
2001	A	`conf`	Hippocampal Shape Analysis Using Medial Surfaces. MICCAI Sylvain Bouix, Jens C. Pruessner, D. Louis Collins, Kaleem Siddiqi
2001	B	`conf`	Knowledge-based extraction of cerebral vasculature from anatomical MRI. Image Processing Lasse Riis Østergaard, Ole Vilhelm Larsen, Jens P. Haase, Frédérick Van Meer, Alan C. Evans, D. Louis Collins
2001	A	`conf`	Retrospective Evaluation of Inter-subject Brain Registration. MICCAI Pierre Hellier, Christian Barillot, Isabelle Corouge, Bernard Gibaud, Georges Le Goualher, D. Louis Collins, Alan C. Evans, Grégoire Malandain, Nicholas Ayache
1999	—	`conf`	ANIMAL+INSECT: Improved Cortical Structure Segmentation. IPMI D. Louis Collins, Alex P. Zijdenbos, Wim F. C. Baaré, Alan C. Evans
1999	J	`jnl`	Automated Extraction and Variability Analysis of Sulcal Neuroanatomy. IEEE Trans. Medical Imaging Georges Le Goualher, Emmanuel Procyk, D. Louis Collins, Raghu Venugopal, Christian Barillot, Alan C. Evans
1998	J	`jnl`	Automated atlas integration and interactive 3-dimensional visualization tools for planning and guidance of functional neurosurgery. IEEE Trans. Medical Imaging Philippe St. Jean, Abbas F. Sadikot, D. Louis Collins, Diego Clonda, Reza Kasrai, Alan C. Evans, Terry M. Peters
1998	A	`conf`	Automatic Identification of Cortical Sulci Using a 3D Probabilistic Atlas. MICCAI Georges Le Goualher, D. Louis Collins, Christian Barillot, Alan C. Evans
1998	J	`jnl`	Design and Construction of a Realistic Digital Brain Phantom. IEEE Trans. Medical Imaging D. Louis Collins, Alex P. Zijdenbos, Vasken Kollokian, John G. Sled, Noor Jehan Kabani, Colin J. Holmes, Alan C. Evans
1998	A	`conf`	Non-linear Cerebral Registration with Sulcal Constraints. MICCAI D. Louis Collins, Georges Le Goualher, Alan C. Evans
1997	J	`jnl`	Animal: Validation and Applications of Nonlinear Registration-Based Segmentation. Int. J. Pattern Recognit. Artif. Intell. D. Louis Collins, Alan C. Evans
1996	—	`conf`	Cortical Constraints for Non-Linear Cortical Registration. VBC D. Louis Collins, Georges Le Goualher, Raghu Venugopal, A. Caramanos, Alan C. Evans, Christian Barillot
1995	J	`jnl`	Model-based 3-D segmentation of multiple sclerosis lesions in magnetic resonance brain images. IEEE Trans. Medical Imaging Micheline Kamber, Rajjan Shinghal, D. Louis Collins, Gordon S. Francis, Alan C. Evans
1994	—	`conf`	Automated 3D nonlinear deformation procedure for determination of gross morphometric variability in human brain. VBC D. Louis Collins, Terence M. Peters, Alan C. Evans
1992	—	`conf`	Model-based 3-D segmentation of multiple sclerosis lesions in dual-echo MRI data. VBC Micheline Kamber, D. Louis Collins, Rajjan Shinghal, Gordon S. Francis, Alan C. Evans
1992	—	`conf`	Model-based segmentation of individual brain structures from MRI data. VBC D. Louis Collins, Terence M. Peters, Weiqian Dai, Alan C. Evans
1992	—	`conf`	Toward frameless stereotaxy: anatomical-vascular correlation and registration. VBC Christopher J. Henri, A. Cukiert, D. Louis Collins, Andre Olivier, Terence M. Peters
1991	—	`conf`	Reconstruction of 3-D Branching Structures. IPMI Christopher J. Henri, D. Louis Collins, Terry M. Peters