César Manuel Vargas Benítez

17 papers B 3Misc 2Journal 5Unranked 6

Year	Rank	Type	Title / Venue / Authors
2020	J	`jnl`	A benchmark of optimally folded protein structures using integer programming and the 3D-HP-SC model. Comput. Biol. Chem. Leandro Takeshi F. Hattori, Matheus Gutoski, César Manuel Vargas Benítez, Luiz Fernando Nunes, Heitor Silvério Lopes
2020	J	`jnl`	PathMolD-AB: Spatiotemporal pathways of protein folding using parallel molecular dynamics with a coarse-grained model. Comput. Biol. Chem. Leandro Takeshi Hattori, Bruna Araujo Pinheiro, Rafael Bertolini Frigori, César Manuel Vargas Benítez, Heitor Silvério Lopes
2018	B	`conf`	A Novel Approach to Protein Folding Prediction based on Long Short-Term Memory Networks: A Preliminary Investigation and Analysis. IJCNN Leandro Takeshi F. Hattori, César Manuel Vargas Benítez, Matheus Gutoski, Nelson Marcelo Romero Aquino, Heitor Silvério Lopes
2017	—	`conf`	A deep bidirectional long short-term memory approach applied to the protein secondary structure prediction problem. LA-CCI Leandro Takeshi F. Hattori, César Manuel Vargas Benítez, Heitor Silvério Lopes
2017	—	`conf`	A gene expression programming approach for evolving multi-class image classifiers. LA-CCI Nelson Marcelo Romero Aquino, Manassés Ribeiro, Matheus Gutoski, César Manuel Vargas Benítez, Heitor Silvério Lopes
2016	—	`conf`	An Ecologically-inspired Parallel Approach Applied to the Protein Structure Reconstruction from Contact Maps. GECCO (Companion) César Manuel Vargas Benítez, Rafael Stubs Parpinelli, Heitor Silvério Lopes
2015	—	`—`	Contributions to the study of the protein folding problem using bioinspired computation and molecular dynamics. César Manuel Vargas Benítez
2014	Misc	`conf`	Gene Expression Programming for Evolving Two-Dimensional Cellular Automata in a Distributed Environment. IDC César Manuel Vargas Benítez, Wagner Rodrigo Weinert, Heitor Silvério Lopes
2014	J	`jnl`	Population-based harmony search using GPU applied to protein structure prediction. Int. J. Comput. Sci. Eng. Marlon Scalabrin, Rafael S. Parpinelli, César Manuel Vargas Benítez, Heitor S. Lopes
2012	—	`conf`	Molecular Dynamics for Simulating the Protein Folding Process Using the 3D AB Off-Lattice Model. BSB César Manuel Vargas Benítez, Heitor Silvério Lopes
2012	J	`jnl`	Parallelism, hybridism and coevolution in a multi-level ABC-GA approach for the protein structure prediction problem. Concurr. Comput. Pract. Exp. César Manuel Vargas Benítez, Rafael Stubs Parpinelli, Heitor Silvério Lopes
2011	—	`conf`	Reconfigurable Hardware Computing for Accelerating Protein Folding Simulations Using the Harmony Search Algorithm and the 3D-HP-Side Chain Model. ICA3PP (2) César Manuel Vargas Benítez, Marlon Scalabrin, Heitor Silvério Lopes, Carlos Raimundo Erig Lima
2010	B	`conf`	Hierarchical Parallel Genetic Algorithm applied to the three-dimensional HP Side-chain Protein Folding Problem. SMC César Manuel Vargas Benítez, Heitor Silvério Lopes
2010	Misc	`conf`	Parallel Artificial Bee Colony Algorithm Approaches for Protein Structure Prediction Using the 3DHP-SC Model. IDC César Manuel Vargas Benítez, Heitor Silvério Lopes
2010	J	`jnl`	Protein structure prediction with the 3D-HP side-chain model using a master-slave parallel genetic algorithm. J. Braz. Comput. Soc. César Manuel Vargas Benítez, Heitor Silvério Lopes
2009	B	`conf`	A parallel genetic algorithm for protein folding prediction using the 3D-HP Side Chain model. IEEE Congress on Evolutionary Computation César Manuel Vargas Benítez, Heitor Silvério Lopes
2007	—	`conf`	Simulation of the Dynamic Behavior of One-Dimensional Cellular Automata Using Reconfigurable Computing. ARC Wagner Rodrigo Weinert, César Manuel Vargas Benítez, Heitor S. Lopes, Carlos Raimundo Erig Lima