Céline Scornavacca

79 papers B 2C 7Journal 62Unranked 5

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Probabilistic Algorithm for Gene-Species Reconciliation with Segmental Duplications. J. Comput. Biol. Yao-ban Chan, Céline Scornavacca, Michael A. Charleston
2026	J	`jnl`	LvD: A New Algorithm for Computing the Likelihood of a Phylogeny. CoRR David Bryant, Céline Scornavacca, David Swofford
2025	C	`conf`	Average-Tree Phylogenetic Diversity of Networks. WABI Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller
2025	—	`conf`	Phylogenetic Network Diversity Parameterized by Reticulation Number and Beyond. RECOMB-CG Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller
2025	—	`conf`	Whole-Genome Duplication Detection with Phylogenomics Reconciliation: A Scalable Approach. RECOMB-CG Reza Kalhor, Manuel Lafond, Céline Scornavacca
2024	J	`jnl`	A Rigorous Framework to Classify the Postduplication Fate of Paralogous Genes. J. Comput. Biol. Reza Kalhor, Guillaume Beslon, Manuel Lafond, Céline Scornavacca
2024	—	`ed.`	Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Boston, MA, USA, April 27-28, 2024, Proceedings RECOMB-CG Céline Scornavacca, Maribel Hernández-Rosales
2024	J	`jnl`	Maximizing Network Phylogenetic Diversity. CoRR Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller
2023	—	`conf`	Classifying the Post-duplication Fate of Paralogous Genes. RECOMB-CG Reza Kalhor, Guillaume Beslon, Manuel Lafond, Céline Scornavacca
2022	J	`jnl`	NetRAX: accurate and fast maximum likelihood phylogenetic network inference. Bioinform. Sarah Lutteropp, Céline Scornavacca, Alexey M. Kozlov, Benoit Morel, Alexandros Stamatakis
2022	J	`jnl`	Treewidth-based algorithms for the small parsimony problem on networks. Algorithms Mol. Biol. Céline Scornavacca, Mathias Weller
2021	J	`jnl`	On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo. PLoS Comput. Biol. Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca
2021	C	`conf`	Treewidth-Based Algorithms for the Small Parsimony Problem on Networks. WABI Céline Scornavacca, Mathias Weller
2020	J	`jnl`	Computing the probability of gene trees concordant with the species tree in the multispecies coalescent. CoRR Jakub Truszkowski, Céline Scornavacca, Fabio Pardi
2020	J	`jnl`	Generation of Level- IEEE ACM Trans. Comput. Biol. Bioinform. Joan Carles Pons, Céline Scornavacca, Gabriel Cardona
2020	B	`conf`	Scanning Phylogenetic Networks Is NP-hard. SOFSEM Vincent Berry, Céline Scornavacca, Mathias Weller
2020	J	`jnl`	Treerecs: an integrated phylogenetic tool, from sequences to reconciliations. Bioinform. Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Céline Scornavacca, Manolo Gouy, Alexandros Stamatakis, Eric Tannier, David P. Parsons
2019	J	`jnl`	An O(n log n) Time Algorithm for Computing the Path-Length Distance Between Trees. Algorithmica David Bryant, Céline Scornavacca
2019	J	`jnl`	Correction: Generation of Binary Tree-Child phylogenetic networks. PLoS Comput. Biol. Gabriel Cardona, Joan Carles Pons, Céline Scornavacca
2019	J	`jnl`	Cutting an alignment with Ockham's razor. CoRR Mark Jones, Philippe Gambette, Leo van Iersel, Remie Janssen, Steven Kelk, Fabio Pardi, Céline Scornavacca
2019	J	`jnl`	Generation of Binary Tree-Child phylogenetic networks. PLoS Comput. Biol. Gabriel Cardona, Joan Carles Pons, Céline Scornavacca
2019	J	`jnl`	Generation of Tree-Child phylogenetic networks. CoRR Gabriel Cardona, Joan Carles Pons, Céline Scornavacca
2019	J	`jnl`	On the Weighted Quartet Consensus problem. Theor. Comput. Sci. Manuel Lafond, Céline Scornavacca
2019	J	`jnl`	Reconciling multiple genes trees via segmental duplications and losses. Algorithms Mol. Biol. Riccardo Dondi, Manuel Lafond, Céline Scornavacca
2018	J	`jnl`	ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Nucleic Acids Res. Matija Brozovic, Christelle Dantec, Justine Dardaillon, Delphine Dauga, Emmanuel Faure, Mathieu Gineste, Alexandra Louis, Magali Naville, Kazuhiro R. Nitta, Jacques Piette, Wendy Reeves, Céline Scornavacca, Paul Simion, Renaud Vincentelli, Maelle Bellec, Sameh Ben Aicha, Marie Fagotto, Marion Guéroult-Bellone, Maximilian Haeussler, Edwin Jacox, Elijah K. Lowe, Mickaël Mendez, Alexis Roberge, Alberto Stolfi, Rui Yokomori, C. Titus Brown, Christian Cambillau, Lionel A. Christiaen, Frédéric Delsuc, Emmanuel J. P. Douzery, Rémi Dumollard, Takehiro Kusakabe, Kenta Nakai, Hiroki Nishida, Yutaka Satou, Billie J. Swalla, Michael Veeman, Jean-Nicolas Volff, Patrick Lemaire
2018	J	`jnl`	An O(n log n) time Algorithm for computing the Path-length Distance between Trees. CoRR David Bryant, Céline Scornavacca
2018	J	`jnl`	RecPhyloXML: a format for reconciled gene trees. Bioinform. Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
2018	C	`conf`	Reconciling Multiple Genes Trees via Segmental Duplications and Losses. WABI Riccardo Dondi, Manuel Lafond, Céline Scornavacca
2018	J	`jnl`	Reconciling Multiple Genes Trees via Segmental Duplications and Losses. CoRR Riccardo Dondi, Manuel Lafond, Céline Scornavacca
2017	J	`jnl`	A Resolution of the Static Formulation Question for the Problem of Computing the History Bound. IEEE ACM Trans. Comput. Biol. Bioinform. Julia Matsieva, Steven Kelk, Céline Scornavacca, Chris Whidden, Dan Gusfield
2017	J	`jnl`	Consistency of orthology and paralogy constraints in the presence of gene transfers. CoRR Mark Jones, Manuel Lafond, Céline Scornavacca
2017	C	`conf`	Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended Abstract). SPIRE Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller
2017	J	`jnl`	Constructing a Consensus Phylogeny from a Leaf-Removal Distance. CoRR Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller
2017	J	`jnl`	Exploring the tiers of rooted phylogenetic network space using tail moves. CoRR Remie Janssen, Mark Jones, Péter L. Erdös, Leo van Iersel, Céline Scornavacca
2017	J	`jnl`	Finding the most parsimonious or likely tree in a network with respect to an alignment. CoRR Steven Kelk, Fabio Pardi, Céline Scornavacca, Leo van Iersel
2017	B	`conf`	On the Weighted Quartet Consensus Problem. CPM Manuel Lafond, Céline Scornavacca
2017	J	`jnl`	Rearrangement moves on rooted phylogenetic networks. PLoS Comput. Biol. Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca
2017	J	`jnl`	Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets. Algorithmica Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu
2017	J	`jnl`	Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses. Bioinform. Edwin Jacox, Mathias Weller, Eric Tannier, Céline Scornavacca
2016	J	`jnl`	ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. Nucleic Acids Res. Matija Brozovic, Cyril Martin, Christelle Dantec, Delphine Dauga, Mickaël Mendez, Paul Simion, Madeline Percher, Baptiste Laporte, Céline Scornavacca, Anna Di Gregorio, Shigeki Fujiwara, Mathieu Gineste, Elijah K. Lowe, Jacques Piette, Claudia Racioppi, Filomena Ristoratore, Yasunori Sasakura, Naohito Takatori, C. Titus Brown, Frédéric Delsuc, Emmanuel J. P. Douzery, Carmela Gissi, Alex McDougall, Hiroki Nishida, Hitoshi Sawada, Billie J. Swalla, Hitoyoshi Yasuo, Patrick Lemaire
2016	J	`jnl`	Do branch lengths help to locate a tree in a phylogenetic network? CoRR Philippe Gambette, Leo van Iersel, Steven Kelk, Fabio Pardi, Céline Scornavacca
2016	C	`conf`	Efficient FPT Algorithms for (Strict) Compatibility of Unrooted Phylogenetic Trees. AAIM Julien Baste, Christophe Paul, Ignasi Sau, Céline Scornavacca
2016	J	`jnl`	Efficient FPT algorithms for (strict) compatibility of unrooted phylogenetic trees. CoRR Julien Baste, Christophe Paul, Ignasi Sau, Céline Scornavacca
2016	J	`jnl`	Fast and accurate branch lengths estimation for phylogenomic trees. BMC Bioinform. Manuel Binet, Olivier Gascuel, Céline Scornavacca, Emmanuel J. P. Douzery, Fabio Pardi
2016	J	`jnl`	Kernelizations for the hybridization number problem on multiple nonbinary trees. J. Comput. Syst. Sci. Leo van Iersel, Steven Kelk, Céline Scornavacca
2016	J	`jnl`	On the Weighted Quartet Consensus problem. CoRR Manuel Lafond, Céline Scornavacca
2016	J	`jnl`	On the consistency of orthology relationships. BMC Bioinform. Mark Jones, Christophe Paul, Céline Scornavacca
2016	J	`jnl`	Phylogenetic incongruence through the lens of Monadic Second Order logic. J. Graph Algorithms Appl. Steven Kelk, Leo van Iersel, Céline Scornavacca, Mathias Weller
2016	J	`jnl`	SylvX: a viewer for phylogenetic tree reconciliations. Bioinform. François Chevenet, Jean-Philippe Doyon, Céline Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry
2016	J	`jnl`	ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony. Bioinform. Edwin Jacox, Cédric Chauve, Gergely J. Szöllosi, Yann Ponty, Céline Scornavacca
2015	J	`jnl`	A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality. BMC Bioinform. Thu-Hien To, Edwin Jacox, Vincent Ranwez, Céline Scornavacca
2015	J	`jnl`	Joint amalgamation of most parsimonious reconciled gene trees. Bioinform. Céline Scornavacca, Edwin Jacox, Gergely J. Szöllosi
2015	J	`jnl`	On Computing the Maximum Parsimony Score of a Phylogenetic Network. SIAM J. Discret. Math. Mareike Fischer, Leo van Iersel, Steven Kelk, Céline Scornavacca
2015	J	`jnl`	Phylogenetic incongruence through the lens of Monadic Second Order logic. CoRR Steven Kelk, Leo van Iersel, Céline Scornavacca
2015	J	`jnl`	Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable. PLoS Comput. Biol. Fabio Pardi, Céline Scornavacca
2014	J	`jnl`	A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees. BMC Bioinform. Leo van Iersel, Steven Kelk, Nela Lekic, Céline Scornavacca
2014	J	`jnl`	Constructing Minimal Phylogenetic Networks from Softwired Clusters is Fixed Parameter Tractable. Algorithmica Steven Kelk, Céline Scornavacca
2014	J	`jnl`	Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets. CoRR Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu
2014	J	`jnl`	The agreement problem for unrooted phylogenetic trees is FPT. J. Graph Algorithms Appl. Céline Scornavacca, Leo van Iersel, Steven Kelk, David Bryant
2013	J	`jnl`	Reconciliation-based detection of co-evolving gene families. BMC Bioinform. Yao-ban Chan, Vincent Ranwez, Céline Scornavacca
2013	J	`jnl`	Representing a Set of Reconciliations in a Compact Way. J. Bioinform. Comput. Biol. Céline Scornavacca, Wojciech Paprotny, Vincent Berry, Vincent Ranwez
2012	J	`jnl`	A First Step Toward Computing All Hybridization Networks For Two Rooted Binary Phylogenetic Trees. J. Comput. Biol. Céline Scornavacca, Simone Linz, Benjamin Albrecht
2012	C	`conf`	A Practical Approximation Algorithm for Solving Massive Instances of Hybridization Number. WABI Leo van Iersel, Steven Kelk, Nela Lekic, Céline Scornavacca
2012	J	`jnl`	Cycle Killer...Qu'est-ce que c'est? On the Comparative Approximability of Hybridization Number and Directed Feedback Vertex Set. SIAM J. Discret. Math. Steven Kelk, Leo van Iersel, Nela Lekic, Simone Linz, Céline Scornavacca, Leen Stougie
2012	J	`jnl`	Fast computation of minimum hybridization networks. Bioinform. Benjamin Albrecht, Céline Scornavacca, Alberto Cenci, Daniel H. Huson
2012	J	`jnl`	On the Elusiveness of Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. Steven Kelk, Céline Scornavacca, Leo van Iersel
2012	J	`jnl`	Towards the fixed parameter tractability of constructing minimal phylogenetic networks from arbitrary sets of nonbinary trees CoRR Steven Kelk, Céline Scornavacca
2011	J	`jnl`	Building species trees from larger parts of phylogenomic databases. Inf. Comput. Céline Scornavacca, Vincent Berry, Vincent Ranwez
2011	J	`jnl`	Constructing minimal phylogenetic networks from softwired clusters is fixed parameter tractable CoRR Steven Kelk, Céline Scornavacca
2011	J	`jnl`	Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set. CoRR Steven Kelk, Leo van Iersel, Nela Lekic, Simone Linz, Céline Scornavacca, Leen Stougie
2011	J	`jnl`	On the elusiveness of clusters CoRR Steven Kelk, Céline Scornavacca, Leo van Iersel
2011	J	`jnl`	Tanglegrams for rooted phylogenetic trees and networks. Bioinform. Céline Scornavacca, Franziska Zickmann, Daniel H. Huson
2010	—	`conf`	An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers. RECOMB-CG Jean-Philippe Doyon, Céline Scornavacca, Konstantin Yu. Gorbunov, Gergely J. Szöllosi, Vincent Ranwez, Vincent Berry
2010	—	`book`	Phylogenetic Networks - Concepts, Algorithms and Applications. Daniel H. Huson, Regula Rupp, Céline Scornavacca
2009	C	`conf`	From Gene Trees to Species Trees through a Supertree Approach. LATA Céline Scornavacca, Vincent Berry, Vincent Ranwez
2009	—	`—`	Supertree methods for phylogenomics. (Méthodes de superarbres pour la phylogénomique). Céline Scornavacca
2008	J	`jnl`	Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier
2008	J	`jnl`	PhySIC_IST: cleaning source trees to infer more informative supertrees. BMC Bioinform. Céline Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel J. P. Douzery, Vincent Ranwez
2007	—	`conf`	The Solution Space of Sorting by Reversals. ISBRA Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier