Cyrus Chothia

22 papers B 2Journal 20
YearRankTypeTitle / Venue / Authors
2015 J jnl
Genome3D: exploiting structure to help users understand their sequences.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Domenico Cozzetto, Jose M. Dana, Ioannis Filippis, Julian Gough, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Jaina Mistry, Alexey G. Murzin, Bernardo Ochoa-Montaño, Matt E. Oates, Marco Punta, Owen J. L. Rackham, Jonathan Stahlhacke, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo
2014 J jnl
SCOP2 prototype: a new approach to protein structure mining.
Nucleic Acids Res.
Antonina Andreeva, Dave Howorth, Cyrus Chothia, Eugene Kulesha, Alexey G. Murzin
2013 J jnl
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana, Ioannis Filippis, Julian Gough, Sarah Hunter, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Alex L. Mitchell, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham, James Smith, Michael J. E. Sternberg, Sameer Velankar, Corin Yeats, Christine A. Orengo
2011 J jnl
SUPERFAMILY 1.75 including a domain-centric gene ontology method.
Nucleic Acids Res.
David A. de Lima Morais, Hai Fang, Owen J. L. Rackham, Derek Wilson, Ralph Pethica, Cyrus Chothia, Julian Gough
2009 J jnl
SUPERFAMILY - sophisticated comparative genomics, data mining, visualization and phylogeny.
Nucleic Acids Res.
Derek Wilson, Ralph Pethica, Yiduo Zhou, Charles Talbot, Christine Vogel, Martin Madera, Cyrus Chothia, Julian Gough
2008 J jnl
Data growth and its impact on the SCOP database: new developments.
Nucleic Acids Res.
Antonina Andreeva, Dave Howorth, John-Marc Chandonia, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin
2007 J jnl
The SUPERFAMILY database in 2007: families and functions.
Nucleic Acids Res.
Derek Wilson, Martin Madera, Christine Vogel, Cyrus Chothia, Julian Gough
2006 J jnl
3D Complex: A Structural Classification of Protein Complexes.
PLoS Comput. Biol.
Emmanuel D. Levy, José B. Pereira-Leal, Cyrus Chothia, Sarah A. Teichmann
2006 J jnl
Protein Family Expansions and Biological Complexity.
PLoS Comput. Biol.
Christine Vogel, Cyrus Chothia
2004 J jnl
SCOP database in 2004: refinements integrate structure and sequence family data.
Nucleic Acids Res.
Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin
2004 J jnl
The SUPERFAMILY database in 2004: additions and improvements.
Nucleic Acids Res.
Martin Madera, Christine Vogel, Sarah K. Kummerfeld, Cyrus Chothia, Julian Gough
2002 J jnl
SCOP database in 2002: refinements accommodate structural genomics.
Nucleic Acids Res.
Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin
2002 J jnl
SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments.
Nucleic Acids Res.
Julian Gough, Cyrus Chothia
2000 J jnl
Fast assignment of protein structures to sequences using the Intermediate Sequence Library PDB-ISL.
Bioinform.
Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park
2000 J jnl
Geometric Invariant Core for the CL and CH1 Domains of Immunoglobulin Molecules.
J. Comput. Biol.
Ognyan Stoyanov, Alexander Kister, Israel M. Gelfand, Casimir A. Kulikowski, Cyrus Chothia
2000 B conf
PDB_ISL: an intermediate sequence library for protein structure assignment.
RECOMB
Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park
2000 J jnl
RSDB: representative protein sequence databases have high information content.
Bioinform.
Jong-Chan Park, Liisa Holm, Andreas Heger, Cyrus Chothia
2000 J jnl
SCOP: a Structural Classification of Proteins database.
Nucleic Acids Res.
Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia
2000 J jnl
Sequence search algorithm assessment and testing toolkit (SAT).
Bioinform.
Jong-Chan Park, Liisa Holm, Cyrus Chothia
1999 B conf
Genome sequences and protein structures.
RECOMB
Sarah A. Teichmann, Jong-Chan Park, Cyrus Chothia
1999 J jnl
SCOP: a Structural Classification of Proteins database.
Nucleic Acids Res.
Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia
1997 J jnl
SCOP: a structural classification of proteins database.
Nucleic Acids Res.
Tim J. P. Hubbard, Alexey G. Murzin, Steven E. Brenner, Cyrus Chothia