Cynthia Brandt

82 papers Misc 36Journal 33Unranked 13

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Social determinants of health extraction from clinical notes across institutions using large language models. npj Digit. Medicine Vipina Kuttichi Keloth, Salih Selek, Qingyu Chen, Christopher Gilman, Sunyang Fu, Yifang Dang, Xinghan Chen, Xinyue Hu, Yujia Zhou, Huan He, Jungwei W. Fan, Karen Wang, Cynthia Brandt, Cui Tao, Hongfang Liu, Hua Xu
2024	J	`jnl`	Safety challenges of AI in medicine. CoRR Xiaoye Wang, Nicole Xi Zhang, Hongyu He, Trang Nguyen, Kun-Hsing Yu, Hao Deng, Cynthia Brandt, Danielle S. Bitterman, Ling Pan, Ching-Yu Cheng, James Zou, Dianbo Liu
2024	J	`jnl`	StrokeClassifier: ischemic stroke etiology classification by ensemble consensus modeling using electronic health records. npj Digit. Medicine Ho-Joon Lee, Lee H. Schwamm, Lauren H. Sansing, Hooman Kamel, Adam DeHavenon, Ashby C. Turner, Kevin N. Sheth, Smita Krishnaswamy, Cynthia Brandt, Hongyu Zhao, Harlan M. Krumholz, Richa Sharma
2022	J	`jnl`	Transphobia, encoded: an examination of trans-specific terminology in SNOMED CT and ICD-10-CM. J. Am. Medical Informatics Assoc. A Ram, Clair A. Kronk, Jacob Eleazer, Joseph L. Goulet, Cynthia Brandt, Karen H. Wang
2021	J	`jnl`	COVID-19 Insights Partnership: Leveraging big data from the Department of Veterans Affairs and supercomputers at the Department of Energy under the public health authority. J. Am. Medical Informatics Assoc. Rachel Ramoni, Molly Klote, Sumitra Muralidhar, Cynthia Brandt, Maya A. Bernstein, Benjamin H. McMahon, Daniel A. Jacobson, Amy C. Justice
2021	—	`conf`	Towards Reducing Health Information Inequities in the Caribbean: The Eastern Caribbean Health Outcomes Research Network Data Sharing Platform Usability Study. MedInfo Terika McCall, Stephanie Date, Dorothy Alexis, Stephanie Whiteman, Salihah Dick, Luis N. Marenco, Meredith Campbell Britton, Baylah Tessier-Sherman, Cynthia Brandt, Karen H. Wang
2020	—	`conf`	A Prototype Application to Identify LGBT Patients in Clinical Notes. IEEE BigData Terri Elizabeth Workman, Joseph L. Goulet, Cynthia Brandt, Melissa Skanderson, Rixin Wang, Allison R. Warren, Jacob Eleazer, Kirsha Gordon, Qing Zeng-Treitler
2020	—	`conf`	Benchmark and Best Practices for Biomedical Knowledge Graph Embeddings. BioNLP David Chang, Ivana Balazevic, Carl Allen, Daniel Chawla, Cynthia Brandt, Richard Andrew Taylor
2020	J	`jnl`	Benchmark and Best Practices for Biomedical Knowledge Graph Embeddings. CoRR David Chang, Ivana Balazevic, Carl Allen, Daniel Chawla, Cynthia Brandt, Richard Andrew Taylor
2020	Misc	`conf`	Leveraging Location Based Services for Analysis of Suicides in Rural Counties. AMIA Barry Sly-Delgado, Meysam Ghaffari, Aastha Gunjan, Cynthia Brandt, Joseph L. Goulet, Karen H. Wang, Ashok Srinivasan
2020	Misc	`conf`	Pain Assessment in Veterans Health Administration Chiropractic Clinic Documentation. AMIA Brian C. Coleman, Samah J. Fodeh, Rixin Wang, Anthony J. Lisi, Alicia Heapy, Cynthia Brandt
2020	Misc	`conf`	Pain Management Collaboratory Coordinating Center (PMC3): Insights from Multiple Work Groups for Clinical Research Informatics Support. AMIA Michael E. Matheny, Stephen L. Luther, William T. Roddy, Cynthia Brandt, Joseph J. Erdos
2020	J	`jnl`	Reducing Annotation Burden Through Multimodal Learning. Frontiers Big Data Kevin Lopez, Samah J. Fodeh, Ahmed Allam, Cynthia Brandt, Michael Krauthammer
2020	Misc	`conf`	Validation of the Data Quality of a Tumor Board Registry Through Assessment of Clinicopathologic Survival Outcomes in Melanoma Patients. AMIA Katherine Given Ligtenberg, David Chartash, Marcus Bosenberg, Cynthia Brandt
2019	Misc	`conf`	A Pragmatic Multi-system Opioid Use Disorder Computable Phenotype for the Emergency Department. AMIA David Chartash, Hyung M. Paek, Bill K. Ross, Dziura James, Nogee Daniel, Eric Boccio, Cory Hines, Aaron M. Schott, Molly M. Jeffery, Mehul D. Patel, Timothy F. Platts-Mills, Osama M. Ahmed, Cynthia Brandt, Katherine C. Couturier, Edward R. Melnick
2019	J	`jnl`	Automated Generation of CONSORT Diagrams Using Relational Database Software. Appl. Clin. Inform. Teresa O'Leary, June Weiss, Benjamin Toll, Cynthia Brandt, Steven Bernstein
2019	—	`conf`	Explainable Deep Learning Applied to Understanding Opioid Use Disorder and Its Risk Factors. IEEE BigData Terri Elizabeth Workman, Qing Zeng-Treitler, YiJun Shao, Joel Kupersmith, Friedhelm Sandbrink, Joseph L. Goulet, Nawar M. Shaar, Christopher Spevak, Cynthia Brandt, Marc R. Blackman
2019	Misc	`conf`	Preliminary chart review for Natural Language Processing development among electronic health records with documentation of marijuana use. AMIA Termeh Feinberg, Joseph L. Goulet, Amy C. Justice, Samah Jamal Fodeh, Lori Bastian, Qing T. Zeng, Cynthia Brandt
2019	Misc	`conf`	Presecription opioid tapering: Mining structured and unstructured data. AMIA Samah J. Fodeh, Jennifer Edelman, William Becker, Cynthia Brandt, Sally Haskell
2019	Misc	`conf`	The Nuts and Bolts of Sponsorship: Perspectives in Informatics. AMIA Tiffany I. Leung, Marion J. Ball, Cynthia Brandt, Gretchen P. Jackson, Titus K. Schleyer
2018	Misc	`conf`	A Common Web Interface Provides Access to Clinical Databases Using REDCap and Python. AMIA Michael Concato, Charles Lu, Farah Kidwai, Cynthia Brandt, Kei Cheung
2018	J	`jnl`	Classifying clinical notes with pain assessment using machine learning. Medical Biol. Eng. Comput. Samah Jamal Fodeh, Dezon Finch, Lina Bouayad, Stephen L. Luther, Han Ling, Robert D. Kerns, Cynthia Brandt
2018	Misc	`conf`	Notes from the Field: Real-World Clinical Information Exchange between Electronic Health Records. AMIA Karen H. Wang, Erica Moreira, Todd Kawecki, Amy C. Justice, Marcella Nunez-Smith, Cynthia Brandt, Nitu Kashyap
2018	J	`jnl`	Suicide Risk on Twitter. Int. J. Knowl. Discov. Bioinform. Samah Jamal Fodeh, Edwin D. Boudreaux, Rixin Wang, Dennis Silva, Robert Bossarte, Joseph L. Goulet, Cynthia Brandt, Al-Talib Hamada
2017	—	`conf`	A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling. CRI Roxanne Wadia, Mark A. Shifman, Forrest W. Levin, Luis N. Marenco, Cynthia Brandt, Kei-Hoi Cheung, Tamar H. Taddei, Michael Krauthammer
2017	—	`conf`	An Evolving Ecosystem for Natural Language Processing in Department of Veterans Affairs. CRI Jennifer H. Garvin, Megha Kalsy, Cynthia Brandt, Stephen Luther, Guy Divita, Gregorio Coronado, Douglas Redd, Qing T. Zeng
2017	J	`jnl`	An Evolving Ecosystem for Natural Language Processing in Department of Veterans Affairs. J. Medical Syst. Jennifer H. Garvin, Megha Kalsy, Cynthia Brandt, Stephen L. Luther, Guy Divita, Gregory Coronado, Doug Redd, Carrie M. Christensen, Brent Hill, Natalie Kelly, Qing Zeng-Treitler
2017	—	`conf`	Classifying Clinical Notes with Pain Assessment. MedInfo Samah J. Fodeh, Dezon Finch, Lina Bouayad, Stephen Luther, Robert D. Kerns, Cynthia Brandt
2017	—	`conf`	Leveraging Twitter to better identify suicide risk. MIH@KDD Samah J. Fodeh, Joseph L. Goulet, Cynthia Brandt, Al-Talib Hamada
2017	Misc	`conf`	Phenotyping physiologic measurement of lung function in a large electronic health record using automated tools. AMIA Kathleen M. Akgün, Keith Sigel, Kei Cheung, Farah Kidwai-Khan, Alex K. Bryant, Cynthia Brandt, Amy C. Justice, Kristina Crothers
2017	J	`jnl`	Utilizing patient data from the veterans administration electronic health record to support web-based clinical decision support: informatics challenges and issues from three clinical domains. BMC Medical Informatics Decis. Mak. Nallakkandi Rajeevan, Kristina M. Niehoff, Peter Charpentier, Forrest L. Levin, Amy Justice, Cynthia Brandt, Terri R. Fried, Perry L. Miller
2016	J	`jnl`	Classification of radiology reports for falls in an HIV study cohort. J. Am. Medical Informatics Assoc. Jonathan Bates, Samah J. Fodeh, Cynthia Brandt, Julie A. Womack
2016	Misc	`conf`	Evaluation of UMLS Term Coverage for Echocardiogram Measures. AMIA Olga V. Patterson, Matthew Freiberg, Cynthia Brandt, Scott L. DuVall
2016	Misc	`conf`	Event Coreference in Support of Temporal Reasoning in Mental Health Notes. AMIA Ruth M. Reeves, Marcus Verhagen, Cynthia Brandt, Wendy W. Chapman, Michael E. Matheny, Steven H. Brown, Brian Marx, Theodore Speroff
2016	Misc	`conf`	Improving Pain Assessment in Medical Intensive Care Unit Through Natural Language Processing. AMIA Douglas Redd, Qing T. Zeng, Cynthia Brandt, Kathleen Akgün
2015	Misc	`conf`	Automating Identification of OEF/OIF Veterans Diagnosed with ALS. AMIA Jennifer M. Aucoin, Shon G. Michael, Amy Justice, Perry L. Miller, Cynthia Brandt, Huned Patwa
2015	Misc	`conf`	Exploring Healthcare Mobility in the US to Improve Quality of Care: Preliminary Results. AMIA Karen H. Wang, Constance Carroll, Brenda Fenton, Samah J. Fodeh, Joseph Erdos, Marcella Nunez-Smith, Amy Justice, Cynthia Brandt
2015	Misc	`conf`	Feature Selection Based LapSVM to Classify Medical Event Reports and Enhance Patient Safety. AMIA Samah J. Fodeh, Cynthia Brandt, Perry L. Miller, Michele Koss, Andrea L. Benin
2015	Misc	`conf`	Improving Evidence-Based Migraine Management in VA Primary Care Clinics by Utilizing Informatics Tools. AMIA Amir Mohammad, Hamada Hamid, Cynthia Brandt
2015	—	`conf`	Laplacian SVM Based Feature Selection Improves Medical Event Reports Classification. ICDM Workshops Samah Jamal Fodeh, Andrea L. Benin, Perry L. Miller, Kyle Lee, Michele Koss, Cynthia Brandt
2015	Misc	`conf`	Using the Adverse Event Reporting System: Can Analysis be Streamlined by Text Processing? AMIA Andrea L. Benin, Samah J. Fodeh, Michele Koss, Kyle Lee, Perry L. Miller, Cynthia Brandt
2013	J	`jnl`	Complementary ensemble clustering of biomedical data. J. Biomed. Informatics Samah Jamal Fodeh, Cynthia Brandt, Thaibinh Luong, Ali Haddad, Martin H. Schultz, Terrence Murphy, Michael Krauthammer
2013	—	`conf`	Improving Patients' Electronic Health Record Comprehension with NoteAid. MedInfo Balaji Polepalli Ramesh, Thomas K. Houston, Cynthia Brandt, Hua Fang, Hong Yu
2013	J	`jnl`	Knowledge-based biomedical word sense disambiguation: an evaluation and application to clinical document classification. J. Am. Medical Informatics Assoc. Vijay Garla, Cynthia Brandt
2013	—	`conf`	MedCat: A Framework for High Level Conceptualization of Medical Notes. ICDM Workshops Samah Jamal Fodeh, Maryan Zirkle, Dezon Finch, Ruth M. Reeves, Joseph Erdos, Cynthia Brandt
2013	J	`jnl`	Semi-supervised clinical text classification with Laplacian SVMs: An application to cancer case management. J. Biomed. Informatics Vijay Garla, Caroline Taylor, Cynthia Brandt
2012	Misc	`conf`	Analysis of VA Telephone Call Notes using Topic Modeling. AMIA Samah J. Fodeh, Sharmila Chatterjee, Cynthia Brandt
2012	Misc	`conf`	Developing a Terminology for PTSD Psychotherapeutic Modalities for use with Clinical Documents. AMIA Jessica Ross, Maryan Zirkle, Cynthia Brandt, Jennifer H. Garvin, Stephen Luther, David Hickam
2012	—	`conf`	Enhancing Clustering by Exploiting Complementary Data Modalities in the Medical Domain. AIAI (1) Samah Jamal Fodeh, Ali Haddad, Cynthia Brandt, Martin H. Schultz, Michael Krauthammer
2012	—	`conf`	Knowledge-Based Biomedical Word Sense Disambiguation: An Evaluation and Application to Clinical Document Classification. HISB Vijay Garla, Cynthia Brandt
2012	J	`jnl`	Ontology-guided feature engineering for clinical text classification. J. Biomed. Informatics Vijay Garla, Cynthia Brandt
2012	J	`jnl`	Semantic similarity in the biomedical domain: an evaluation across knowledge sources. BMC Bioinform. Vijay Garla, Cynthia Brandt
2012	Misc	`conf`	Towards a Clinically Efficient Model for Clinical Decision Support Linked to the VA EMR: A Pilot System for Neuropathic Pain. AMIA Michael Phipps, Hajime Tokuno, Nallakkandi Rajeevan, Forrest W. Levin, Sandra J. Frawley, Cynthia Brandt, Perry L. Miller
2011	J	`jnl`	The Yale cTAKES extensions for document classification: architecture and application. J. Am. Medical Informatics Assoc. Vijay Garla, Vincent Lo Re III, Zachariah Dorey-Stein, Farah Kidwai, Matthew Scotch, Julie A. Womack, Amy Justice, Cynthia Brandt
2010	J	`jnl`	Brief review: Use of statistical analysis in the biomedical informatics literature. J. Am. Medical Informatics Assoc. Matthew Scotch, Mona Duggal, Cynthia Brandt, Zhenqui Lin, Richard N. Shiffman
2006	J	`jnl`	Pivoting approaches for bulk extraction of Entity-Attribute-Value data. Comput. Methods Programs Biomed. Valentin Dinu, Prakash M. Nadkarni, Cynthia Brandt
2006	Misc	`conf`	Qualitative Study of Patients' Perceptions of Safety and Risk Related to Electronic Health Records in a Hospital. AMIA Hyung M. Paek, Janice Swiatek-Kelley, Ryan T. O'Connell, Cynthia Brandt
2005	Misc	`conf`	Automating Identification of Adverse Events Related to Abnormal Lab Results Using Standard Vocabularies. AMIA Cynthia Brandt, Charles Lu, Prakash M. Nadkarni
2005	Misc	`conf`	Designing a Tracking System Based on Cognitive Theory of Error. AMIA Hyung M. Paek, Cynthia Brandt
2005	Misc	`conf`	Informatics Tools to Improve Clinical Research. AMIA Stephanie Argraves, Cynthia Brandt, Roy Money, Prakash M. Nadkarni
2005	Misc	`conf`	Metadata Driven Generation of Reports for Clinical Studies. AMIA Kexin Sun, Prakash M. Nadkarni, Cynthia Brandt
2005	J	`jnl`	The GuideLine Implementability Appraisal (GLIA): development of an instrument to identify obstacles to guideline implementation. BMC Medical Informatics Decis. Mak. Richard N. Shiffman, Jane Dixon, Cynthia Brandt, Abdelwaheb Essaihi, Allen Hsiao, George Michel, Ryan T. O'Connell
2005	Misc	`conf`	Validation of a System for Quality Improvement: Preliminary Data. AMIA Andrea L. Benin, Harlan M. Krumholz, Eugene Shapiro, Cynthia Brandt
2004	J	`jnl`	Application of Information Technology: Managing Complex Change in Clinical Study Metadata. J. Am. Medical Informatics Assoc. Cynthia Brandt, Rohit Gadagkar, Cesar Rodriguez, Prakash M. Nadkarni
2004	J	`jnl`	Case Report: Exploring the Portability of Informatics Capabilities from a Clinical Application to a Bioscience Application. J. Am. Medical Informatics Assoc. Mark A. Shifman, Ranjana Srivastava, Cynthia Brandt, Tong-Ruei Li, Kevin P. White, Perry L. Miller
2003	J	`jnl`	Temporal query of attribute-value patient data: utilizing the constraints of clinical studies. Int. J. Medical Informatics Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni
2003	Misc	`conf`	The Integration of Similar Clinical Research Data Collection Instruments. AMIA Dorothy B. Cohen, Sandra J. Frawley, Mark A. Shifman, Perry L. Miller, Cynthia Brandt
2003	Misc	`conf`	TrialDB: A Web-based Clinical Study Data Management System AMIA 2003 Open Source Expo. AMIA Cynthia Brandt, Aniruddha M. Deshpande, Charles Lu, Gowri Ananth, Kexin Sun, Rohit Gadagkar, Richard Morse, Cesar Rodriguez, Perry L. Miller, Prakash M. Nadkarni
2002	J	`jnl`	Application of Information Technology: Metadata-driven Ad Hoc Query of Patient Data: Meeting the Needs of Clinical Studies. J. Am. Medical Informatics Assoc. Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni
2002	J	`jnl`	Metadata-driven creation of data marts from an EAV-modeled clinical research database. Int. J. Medical Informatics Cynthia Brandt, Richard Morse, Keri Matthews, Kexin Sun, Aniruddha M. Deshpande, Rohit Gadagkar, Dorothy B. Cohen, Perry L. Miller, Prakash M. Nadkarni
2001	Misc	`conf`	Generation of pedigree diagrams for web display using scalable vector graphics from a clinical trials database. AMIA Sanjay K. Fernando, Cynthia Brandt, Prakash M. Nadkarni
2001	J	`jnl`	Research Paper: UMLS Concept Indexing for Production Databases: A Feasibility Study. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Roland Chen, Cynthia Brandt
2001	J	`jnl`	Web-based UMLS concept retrieval by automatic text scanning: a comparison of two methods. Comput. Methods Programs Biomed. Cynthia Brandt, Prakash M. Nadkarni
2000	J	`jnl`	Application of Information Technology: WebEAV: Automatic Metadata-driven Generation of Web Interfaces to Entity-Attribute-Value Databases. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Cynthia Brandt, Luis N. Marenco
2000	Misc	`conf`	Promoting Workflow Integration with Information Management Services and GEM-encoded Guidelines. AMIA Abha Agrawal, Cynthia Brandt, Richard N. Shiffman
1999	J	`jnl`	Model Formulation: A Design Model for Computer-based Guideline Implementation Based on Information Management Services. J. Am. Medical Informatics Assoc. Richard N. Shiffman, Cynthia Brandt, Yischon Liaw, Geoffrey J. Corb
1999	J	`jnl`	Review: Computer-based Guideline Implementation Systems: A Systematic Review of Functionality and Effectiveness. J. Am. Medical Informatics Assoc. Richard N. Shiffman, Yischon Liaw, Cynthia Brandt, Geoffrey J. Corb
1998	Misc	`conf`	ACT/DB: A Clinical Trials Database Being Refined on a Pilot Basis at Two Medical Centers. AMIA Cynthia Brandt, Prakash M. Nadkarni, Lee Schacter, Daniel Zelterman, Yuli Li, John M. Fisk, Edward K. Shultz, Perry L. Miller
1998	J	`jnl`	Application of Technology: Managing Attribute-Value Clinical Trials Data Using the ACT/DB Client-Server Database System. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Cynthia Brandt, Sandra J. Frawley, Frederick G. Sayward, Robin Einbinder, Daniel Zelterman, Lee Schacter, Perry L. Miller
1997	Misc	`conf`	A prototype Web site for immunization knowledge maintenance. AMIA Perry L. Miller, Sandra J. Frawley, Cynthia Brandt, Frederick G. Sayward
1997	Misc	`conf`	SEURAT: Scanned Entry of Structured Data for a Pediatric Health Maintenance Record System. AMIA Richard N. Shiffman, Cynthia Brandt, Maryrose Hoffman, Wanda Wiig, Lori A. Fernandes
1997	Misc	`conf`	Using Coded Semantic Relationships to Retrieve and Structure Clinical Reference Information. AMIA Cynthia Brandt, Lori A. Fernandes, Seth Powsner, Keith J. Ruskin, Perry L. Miller