Curtis Huttenhower

38 papers A 1Journal 34Unranked 3
YearRankTypeTitle / Venue / Authors
2022 J jnl
Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper.
Bioinform.
Alexander G. McFarland, Nolan W. Kennedy, Carolyn E. Mills, Danielle Tullman-Ercek, Curtis Huttenhower, Erica M. Hartmann
2022 J jnl
High-sensitivity pattern discovery in large, paired multiomic datasets.
Bioinform.
Andrew R. Ghazi, Kathleen Sucipto, Ali Rahnavard, Eric A. Franzosa, Lauren J. McIver, Jason Lloyd-Price, Emma H. Schwager, George Weingart, Yo Sup Moon, Xochitl C. Morgan, Levi Waldron, Curtis Huttenhower
2021 J jnl
A statistical model for describing and simulating microbial community profiles.
PLoS Comput. Biol.
Siyuan Ma, Boyu Ren, Himel Mallick, Yo Sup Moon, Emma H. Schwager, Sagun Maharjan, Timothy L. Tickle, Yiren Lu, Rachel N. Carmody, Eric A. Franzosa, Lucas Janson, Curtis Huttenhower
2021 J jnl
Multivariable association discovery in population-scale meta-omics studies.
PLoS Comput. Biol.
Himel Mallick, Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen, Timothy L. Tickle, George Weingart, Boyu Ren, Emma H. Schwager, Suvo Chatterjee, Kelsey N. Thompson, Jeremy E. Wilkinson, Ayshwarya Subramanian, Yiren Lu, Levi Waldron, Joseph N. Paulson, Eric A. Franzosa, Héctor Corrada Bravo, Curtis Huttenhower
2021 J jnl
Statistical approaches for differential expression analysis in metatranscriptomics.
Bioinform.
Yancong Zhang, Kelsey N. Thompson, Curtis Huttenhower, Eric A. Franzosa
2018 J jnl
bioBakery: a meta'omic analysis environment.
Bioinform.
Lauren J. McIver, Galeb Abu-Ali, Eric A. Franzosa, Randall Schwager, Xochitl C. Morgan, Levi Waldron, Nicola Segata, Curtis Huttenhower
2017 J jnl
A Bayesian method for detecting pairwise associations in compositional data.
PLoS Comput. Biol.
Emma H. Schwager, Himel Mallick, Steffen Ventz, Curtis Huttenhower
2017 — conf
A Workshop on Microbiomics, Metagenomics, and Metabolomics.
BCB
Soha Hassoun, Curtis Huttenhower
2016 J jnl
Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer.
PLoS Comput. Biol.
Daniela Börnigen, Svitlana Tyekucheva, Xiaodong Wang, Jennifer R. Rider, Gwo-Shu Lee, Lorelei A. Mucci, Christopher Sweeney, Curtis Huttenhower
2015 J jnl
High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.
PLoS Comput. Biol.
James Kaminski, Molly K. Gibson, Eric A. Franzosa, Nicola Segata, Gautam Dantas, Curtis Huttenhower
2014 J jnl
Cross-study validation for the assessment of prediction algorithms.
Bioinform.
Christoph Bernau, Markus Riester, Anne-Laure Boulesteix, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron, Lorenzo Trippa
2014 J jnl
MetaRef: a pan-genomic database for comparative and community microbial genomics.
Nucleic Acids Res.
Katherine Huang, Arthur Brady, Anup Mahurkar, Owen White, Dirk Gevers, Curtis Huttenhower, Nicola Segata
2014 J jnl
Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis.
Bioinform.
Sihai Dave Zhao, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron
2013 J jnl
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets.
PLoS Comput. Biol.
Omry Koren, Dan Knight, Antonio González, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, Ruth E. Ley
2013 J jnl
Inferring Developmental Stage Composition from Gene Expression in Human Malaria.
PLoS Comput. Biol.
Regina Joice, Vagheesh Narasimhan, Jacqui Montgomery, Amar Bir Sidhu, Keunyoung Oh, Evan Meyer, Willythssa Pierre-Louis, Karl Seydel, Danny Milner, Kim Williamson, Roger Wiegand, Daouda Ndiaye, Johanna Daily, Dyann Wirth, Terrie Taylor, Curtis Huttenhower, Matthias Marti
2013 J jnl
curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome.
Database J. Biol. Databases Curation
Benjamin Frederick Ganzfried, Markus Riester, Benjamin Haibe-Kains, Thomas Risch, Svitlana Tyekucheva, Ina Jazic, Xin Victoria Wang, Mahnaz Ahmadifar, Michael J. Birrer, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron
2012 J jnl
Bioinformatics for the Human Microbiome Project.
PLoS Comput. Biol.
Dirk Gevers, Mihai Pop, Patrick D. Schloss, Curtis Huttenhower
2012 J jnl
Chapter 12: Human Microbiome Analysis.
PLoS Comput. Biol.
Xochitl C. Morgan, Curtis Huttenhower
2012 J jnl
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome.
PLoS Comput. Biol.
Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Kelley, Barbara A. Methé, Patrick D. Schloss, Dirk Gevers, Makedonka Dautova Mitreva, Curtis Huttenhower
2012 J jnl
Microbial Co-occurrence Relationships in the Human Microbiome.
PLoS Comput. Biol.
Karoline Faust, Jarupon Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower
2011 J jnl
Optimized application of penalized regression methods to diverse genomic data.
Bioinform.
Levi Waldron, Melania Pintilie, Ming-Sound Tsao, Frances A. Shepherd, Curtis Huttenhower, Igor Jurisica
2010 J jnl
A Quick Guide to Large-Scale Genomic Data Mining.
PLoS Comput. Biol.
Curtis Huttenhower, Oliver Hofmann
2010 J jnl
Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana.
BMC Syst. Biol.
Ana Pop, Curtis Huttenhower, Anjali Iyer-Pascuzzi, Philip N. Benfey, Olga G. Troyanskaya
2010 J jnl
Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components.
PLoS Comput. Biol.
Christopher Y. Park, David C. Hess, Curtis Huttenhower, Olga G. Troyanskaya
2009 J jnl
Detailing regulatory networks through large scale data integration.
Bioinform.
Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller
2009 J jnl
Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis.
PLoS Comput. Biol.
Matthew A. Hibbs, Chad L. Myers, Curtis Huttenhower, David C. Hess, Kai Li, Amy A. Caudy, Olga G. Troyanskaya
2009 J jnl
Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in
PLoS Comput. Biol.
Maria D. Chikina, Curtis Huttenhower, Coleen T. Murphy, Olga G. Troyanskaya
2009 J jnl
Graphle: Interactive exploration of large, dense graphs.
BMC Bioinform.
Curtis Huttenhower, Sajid O. Mehmood, Olga G. Troyanskaya
2009 J jnl
Predicting Cellular Growth from Gene Expression Signatures.
PLoS Comput. Biol.
Edoardo M. Airoldi, Curtis Huttenhower, David Gresham, Charles Lu, Amy A. Caudy, Maitreya J. Dunham, James R. Broach, David Botstein, Olga G. Troyanskaya
2009 J jnl
The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.
Bioinform.
Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy, David C. Hess, Olga G. Troyanskaya
2008 A conf
Assessing the functional structure of genomic data.
ISMB
Curtis Huttenhower, Olga G. Troyanskaya
2008 J jnl
The Sleipnir library for computational functional genomics.
Bioinform.
Curtis Huttenhower, Mark Schroeder, Maria D. Chikina, Olga G. Troyanskaya
2007 J jnl
Exploring the functional landscape of gene expression: directed search of large microarray compendia.
Bioinform.
Matthew A. Hibbs, David C. Hess, Chad L. Myers, Curtis Huttenhower, Kai Li, Olga G. Troyanskaya
2007 J jnl
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.
BMC Bioinform.
Curtis Huttenhower, Avi I. Flamholz, Jessica N. Landis, Sauhard Sahi, Chad L. Myers, Kellen L. Olszewski, Matthew A. Hibbs, Nathan O. Siemers, Olga G. Troyanskaya, Hilary A. Coller
2006 J jnl
A scalable method for integration and functional analysis of multiple microarray datasets.
Bioinform.
Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Olga G. Troyanskaya
2006 J jnl
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.
BMC Bioinform.
Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Huttenhower, Chad L. Myers, Olga G. Troyanskaya
2005 — conf
A General Methodology for Integration of Microarray Data.
CSB Workshops
Curtis Huttenhower, Olga G. Troyanskaya
2003 — conf
The JAVELIN Question-Answering System at TREC 2003: A Multi-Strategh Approach with Dynamic Planning.
TREC
Eric Nyberg, Teruko Mitamura, James P. Callan, Jaime G. Carbonell, Robert E. Frederking, Kevyn Collins-Thompson, Laurie Hiyakumoto, Yifen Huang, Curtis Huttenhower, Scott Judy, Jeongwoo Ko, Anna Kupsc, Lucian Vlad Lita, Vasco Pedro, David Svoboda, Benjamin Van Durme