Cristina P. Vieira

16 papers Misc 8Journal 7Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Towards a more accurate and reliable evaluation of machine learning protein-protein interaction prediction model performance in the presence of unavoidable dataset biases.
J. Integr. Bioinform.
Alba Nogueira-Rodríguez, Daniel Glez-Peña, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández
2024 J jnl
Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites.
J. Integr. Bioinform.
Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira
2024 J jnl
Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information.
J. Integr. Bioinform.
Daniel Glez-Peña, Hugo López-Fernández, Pedro Duque, Cristina P. Vieira, Jorge Vieira
2024 J jnl
SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines.
BMC Bioinform.
Miguel Reboiro-Jato, Daniel Pérez-Rodríguez, Miguel José Da Silva, David Vila-Fernández, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández
2023 Misc conf
Auto-phylo: A Pipeline Maker for Phylogenetic Studies.
PACBB
Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira
2023 J jnl
On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3.
J. Integr. Bioinform.
André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira
2022 Misc conf
EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species.
PACBB
Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, André D. Sousa, Hugo López-Fernández, Cristina P. Vieira
2022 J jnl
SEDA: A Desktop Tool Suite for FASTA Files Processing.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2021 Misc conf
The pegi3s Bioinformatics Docker Images Project.
PACBB
Hugo López-Fernández, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2020 Misc conf
Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen.
PACBB
Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira
2019 Misc conf
Inferring Positive Selection in Large Viral Datasets.
PACBB
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2018 Misc conf
A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees.
PACBB
Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato, Jorge Vieira
2018 Misc conf
EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species.
PACBB
Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira, Miguel Reboiro-Jato
2017 Misc conf
Automated Collection and Sharing of Adaptive Amino Acid Changes Data.
PACBB
Noé Vázquez, Cristina P. Vieira, Bárbara S. R. Amorim, André Torres, Hugo López-Fernández, Florentino Fdez-Riverola, José L. R. Sousa, Miguel Reboiro-Jato, Jorge Vieira
2012 J jnl
ADOPS - Automatic Detection Of Positively Selected Sites.
J. Integr. Bioinform.
David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P. Vieira, Nuno A. Fonseca, Jorge Vieira
2009 — conf
Partitional Clustering of Protein Sequences - An Inductive Logic Programming Approach.
IWANN (2)
Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho, Cristina P. Vieira, Jorge Vieira