Cristian Coarfa

20 papers A* 1A 2B 2Misc 1Journal 9Unranked 5
YearRankTypeTitle / Venue / Authors
2015 J jnl
Integrative analysis of 111 reference human epigenomes Open.
Nat.
Roadmap Epigenomics Consortium, Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker, Matthew D. Schultz, Lucas D. Ward, Abhishek Sarkar, Gerald T. Quon, Richard S. Sandstrom, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang, Melina Claussnitzer, Yaping Liu, Cristian Coarfa, R. Alan Harris, Noam Shoresh, Charles B. Epstein, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister, Chibo Hong, Philippe Gascard, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul, Peter J. Sabo, Mukul S. Bansal, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham, Susan J. Fisher, David Haussler, Steven J. M. Jones, Wei Li, Marco A. Marra, Michael T. McManus, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis
2014 J jnl
Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools.
BMC Bioinform.
Cristian Coarfa, Christina Pichot, Andrew R. Jackson, Arpit Tandon, Viren Amin, Sriram Raghuraman, Sameer Paithankar, Adrian V. Lee, Sean E. McGuire, Aleksandar Milosavljevic
2012 J jnl
An integrative variant analysis suite for whole exome next-generation sequencing data.
BMC Bioinform.
Danny Challis, Jin Yu, Uday S. Evani, Andrew R. Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A. Gibbs, Fuli Yu
2012 J jnl
The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences.
BMC Bioinform.
Kevin Riehle, Cristian Coarfa, Andrew R. Jackson, Jun Ma, Arpit Tandon, Sameer Paithankar, Sriram Raghuraman, Toni-Ann Mistretta, Delphine Saulnier, Sabeen Raza, Maria Diaz, Robert Shulman, Kjersti Aagaard, James Versalovic, Aleksandar Milosavljevic
2011 — conf
Enabling Atlas2 personal genome analysis on the cloud.
GENSiPS
Uday S. Evani, Danny Challis, Jin Yu, Andrew R. Jackson, Sameer Paithankar, Matthew N. Bainbridge, Cristian Coarfa, Aleksandar Milosavljevic, Fuli Yu
2010 J jnl
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing.
BMC Bioinform.
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Zuozhou Chen, R. Alan Harris, Aleksandar Milosavljevic
2008 Misc conf
Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies.
Pacific Symposium on Biocomputing
Cristian Coarfa, Aleksandar Milosavljevic
2007 A conf
Scalability analysis of SPMD codes using expectations.
ICS
Cristian Coarfa, John M. Mellor-Crummey, Nathan Froyd, Yuri Dotsenko
2006 J jnl
Experiences with Sweep3D implementations in Co-array Fortran.
J. Supercomput.
Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey
2006 J jnl
PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction.
Int. J. Bioinform. Res. Appl.
Yuri Dotsenko, Cristian Coarfa, Luay Nakhleh, John M. Mellor-Crummey, Usman Roshan
2006 J jnl
Performance analysis of TLS Web servers.
ACM Trans. Comput. Syst.
Cristian Coarfa, Peter Druschel, Dan S. Wallach
2005 B conf
An evaluation of global address space languages: co-array fortran and unified parallel C.
PPoPP
Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, François Cantonnet, Tarek A. El-Ghazawi, Ashrujit Mohanti, Yiyi Yao, Daniel G. Chavarría-Miranda
2005 — conf
PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction.
ICPADS (2)
Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, Luay Nakhleh, Usman Roshan
2004 — conf
A Multi-Platform Co-Array Fortran Compiler.
IEEE PACT
Yuri Dotsenko, Cristian Coarfa, John M. Mellor-Crummey
2004 — conf
Experiences with Co-array Fortran on Hardware Shared Memory Platforms.
LCPC
Yuri Dotsenko, Cristian Coarfa, John M. Mellor-Crummey, Daniel G. Chavarría-Miranda
2003 B conf
An emerging co-array fortran compiler.
PPoPP
Cristian Coarfa, Yuri Dotsenko
2003 — conf
Co-array Fortran Performance and Potential: An NPB Experimental Study.
LCPC
Cristian Coarfa, Yuri Dotsenko, Jason Eckhardt, John M. Mellor-Crummey
2003 J jnl
Random 3-SAT: The Plot Thickens.
Constraints An Int. J.
Cristian Coarfa, Demetrios D. Demopoulos, Alfonso San Miguel Aguirre, Devika Subramanian, Moshe Y. Vardi
2002 A* conf
Performance Analysis of TLS Web Servers.
NDSS
Cristian Coarfa, Peter Druschel, Dan S. Wallach
2000 A conf
Random 3-SAT: The Plot Thickens.
CP
Cristian Coarfa, Demetrios D. Demopoulos, Alfonso San Miguel Aguirre, Devika Subramanian, Moshe Y. Vardi