Craig L. Zirbel

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Graph neural network and diffusion model for modeling RNA interatomic interactions.
Bioinform.
Marek Justyna, Craig L. Zirbel, Maciej Antczak, Marta Szachniuk
2024 J jnl
R3DMCS: a web server for visualizing structural variation in RNA motifs across experimental 3D structures from the same organism or across species.
Bioinform.
Sri Devan Appasamy, Craig L. Zirbel
2023 J jnl
Seriation using tree-penalized path length.
Eur. J. Oper. Res.
Denis A. Aliyev, Craig L. Zirbel
2016 J jnl
JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs.
Nucleic Acids Res.
James Roll, Craig L. Zirbel, Blake A. Sweeney, Anton I. Petrov, Neocles Leontis
2015 J jnl
R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.
Nucleic Acids Res.
Jamie J. Cannone, Blake A. Sweeney, Anton I. Petrov, Robin Ray Gutell, Craig L. Zirbel, Neocles Leontis
2014 J jnl
The Nucleic Acid Database: new features and capabilities.
Nucleic Acids Res.
Buvaneswari Coimbatore Narayanan, John D. Westbrook, Saheli Ghosh, Anton I. Petrov, Blake A. Sweeney, Craig L. Zirbel, Neocles Leontis, Helen M. Berman
2013 J jnl
On the correlation of the supremum and the infimum and of maximum gain and maximum loss of Brownian motion with drift.
J. Comput. Appl. Math.
Ceren Vardar-Acar, Craig L. Zirbel, Gábor J. Székely
2013 J jnl
R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.
Nucleic Acids Res.
Ryan R. Rahrig, Anton I. Petrov, Neocles Leontis, Craig L. Zirbel
2011 J jnl
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data.
Appl. Ontology
Robert Hoehndorf, Colin R. Batchelor, Thomas Bittner, Michel Dumontier, Karen Eilbeck, Rob Knight, Chris Mungall, Jane S. Richardson, Jesse Stombaugh, Eric Westhof, Craig L. Zirbel, Neocles Leontis
2011 J jnl
WebFR3D - a server for finding, aligning and analyzing recurrent RNA 3D motifs.
Nucleic Acids Res.
Anton I. Petrov, Craig L. Zirbel, Neocles Leontis
2010 J jnl
R3D Align: global pairwise alignment of RNA 3D structures using local superpositions.
Bioinform.
Ryan R. Rahrig, Neocles Leontis, Craig L. Zirbel