Craig K. Jones

41 papers A* 1A 1B 2Journal 24Unranked 13

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Adaptive Label Error Detection: A Bayesian Approach to Mislabeled Data Detection. CoRR Zan Chaudhry, Noam H. Rotenberg, Brian Caffo, Craig K. Jones, Haris I. Sair
2026	J	`jnl`	Emergent Language Symbolic Autoencoder (ELSA) with weak supervision to model hierarchical brain networks. Comput. Biol. Medicine Ammar Ahmed Pallikonda Latheef, Alberto Santamaría-Pang, Craig K. Jones, Haris I. Sair
2025	J	`jnl`	Self-Supervised Feature Detection and 3D Reconstruction for Real-Time Neuroendoscopic Guidance. IEEE Trans. Biomed. Eng. Prasad Vagdargi, Ali Uneri, Stephen Z. Liu, Craig K. Jones, Alejandro Sisniega, Junghoon Lee, Patrick A. Helm, Ryan P. Lee, Mark G. Luciano, Gregory D. Hager, Jeffrey H. Siewerdsen
2024	J	`jnl`	Active Learning in Brain Tumor Segmentation with Uncertainty Sampling and Annotation Redundancy Restriction. J. Imaging Inform. Medicine Daniel D. Kim, Rajat S. Chandra, Li Yang, Jing Wu, Xue Feng, Michael Atalay, Chetan Bettegowda, Craig K. Jones, Haris I. Sair, Wei-hua Liao, Chengzhang Zhu, Beiji Zou, Anahita Fathi Kazerooni, Ali Nabavizadeh, Zhicheng Jiao, Jian Peng, Harrison X. Bai
2024	J	`jnl`	Atlas-Based Labeling of Resting-State fMRI. Brain Connect. Hrishikesh Kambli, Alberto Santamaría-Pang, Ivan Tarapov, Elham Beheshtian, Licia P. Luna, Haris I. Sair, Craig K. Jones
2024	J	`jnl`	Deformable registration of preoperative MR and intraoperative long-length tomosynthesis images for guidance of spine surgery via image synthesis. Comput. Medical Imaging Graph. Yixuan Huang, Xiaoxuan Zhang, Yicheng Hu, Ashley Johnston, Craig K. Jones, Wojciech Zbijewski, Jeffrey H. Siewerdsen, Patrick A. Helm, Timothy Witham, Ali Uneri
2024	J	`jnl`	Detecting Alzheimer's Disease Stages and Frontotemporal Dementia in Time Courses of Resting-State fMRI Data Using a Machine Learning Approach. J. Imaging Inform. Medicine Mohammad Amin Sadeghi, Daniel Stevens, Shinjini Kundu, Rohan Sanghera, Richard Dagher, Vivek Yedavalli, Craig K. Jones, Haris I. Sair, Licia P. Luna
2024	J	`jnl`	Emergent Language Symbolic Autoencoder (ELSA) with Weak Supervision to Model Hierarchical Brain Networks. CoRR Ammar Ahmed Pallikonda Latheef, Alberto Santamaría-Pang, Craig K. Jones, Haris I. Sair
2024	A*	`conf`	Enhancing vision-language models for medical imaging: bridging the 3D gap with innovative slice selection. NeurIPS Yuli Wang, Peng Jian, Yuwei Dai, Craig K. Jones, Haris I. Sair, Jinglai Shen, Nicolas Loizou, Jing Wu, Wen-Chi Hsu, Maliha Imami, Zhicheng Jiao, Paul Zhang, Harrison X. Bai
2024	A	`conf`	Evidential Uncertainty Quantification: A Variance-Based Perspective. WACV Ruxiao Duan, Brian Caffo, Harrison X. Bai, Haris I. Sair, Craig K. Jones
2024	—	`conf`	RTA-Former: Reverse Transformer Attention for Polyp Segmentation. EMBC Zhikai Li, Murong Yi, Ali Uneri, Sihan Niu, Craig K. Jones
2024	J	`jnl`	RTA-Former: Reverse Transformer Attention for Polyp Segmentation. CoRR Zhikai Li, Murong Yi, Ali Uneri, Sihan Niu, Craig K. Jones
2023	J	`jnl`	Active Learning in Brain Tumor Segmentation with Uncertainty Sampling, Annotation Redundancy Restriction, and Data Initialization. CoRR Daniel D. Kim, Rajat S. Chandra, Jian Peng, Jing Wu, Xue Feng, Michael Atalay, Chetan Bettegowda, Craig K. Jones, Haris I. Sair, Wei-hua Liao, Chengzhang Zhu, Beiji Zou, Li Yang, Anahita Fathi Kazerooni, Ali Nabavizadeh, Harrison X. Bai, Zhicheng Jiao
2023	J	`jnl`	Applications of Sequential Learning for Medical Image Classification. CoRR Sohaib Naim, Brian Caffo, Haris I. Sair, Craig K. Jones
2023	J	`jnl`	Automated Artifact Detection in Ultra-widefield Fundus Photography of Patients with Sickle Cell Disease. CoRR Anqi Feng, Dimitri Johnson, Grace R. Reilly, Loka Thangamathesvaran, Ann Nampomba, Mathias Unberath, Adrienne W. Scott, Craig K. Jones
2023	J	`jnl`	Brain Tumor Segmentation for Multi-Modal MRI with Missing Information. J. Imaging Inform. Medicine Xue Feng, Kanchan Ghimire, Daniel D. Kim, Rajat S. Chandra, Helen Zhang, Jian Peng, Binghong Han, Gaofeng Huang, Quan Chen, Sohil H. Patel, Chetan Bettagowda, Haris I. Sair, Craig K. Jones, Zhicheng Jiao, Li Yang, Harrison X. Bai
2023	J	`jnl`	Deep Labeling of fMRI Brain Networks. CoRR Ammar Ahmed Pallikonda Latheef, Sejal Ghate, Zhipeng Hui, Alberto Santamaría-Pang, Ivan Tarapov, Haris I. Sair, Craig K. Jones
2023	J	`jnl`	Evidential Uncertainty Quantification: A Variance-Based Perspective. CoRR Ruxiao Duan, Brian Caffo, Harrison X. Bai, Haris I. Sair, Craig K. Jones
2023	—	`conf`	Multi-modality registration of preoperative MR and intraoperative long-length tomosynthesis using GAN synthesis and 3D-2D registration. Image-Guided Procedures Yixuan Huang, Xiaoxuan Zhang, Ashley Johnston, Craig K. Jones, Jeffrey H. Siewerdsen, Wojciech Zbijewski, Patrick A. Helm, Brendan Judy, Amanda Sacino, Ali Bydon, Timothy Witham, Ali Uneri
2023	—	`conf`	Real-time 3D neuroendoscopic guidance using SLAM: first clinical studies. Image-Guided Procedures Prasad Vagdargi, Ali Uneri, Craig K. Jones, Xiaoxuan Zhang, Pengwei Wu, Runze Han, Alejandro Sisniega, Junghoon Lee, Patrick A. Helm, Mark G. Luciano, William S. Anderson, Gregory D. Hager, Jeffrey H. Siewerdsen
2022	—	`conf`	Automatic labeling of vertebrae in long-length intraoperative imaging with a multi-view, region-based CNN. Image-Guided Procedures Yixuan Huang, Craig K. Jones, Xiaoxuan Zhang, Ashley Johnston, Nafi Aygun, Timothy Witham, Patrick A. Helm, Jeffrey H. Siewerdsen, Ali Uneri
2022	—	`conf`	Deep Labeling of fMRI Brain Networks Using Cloud Based Processing. ISVC (1) Sejal Ghate, Alberto Santamaría-Pang, Ivan Tarapov, Haris I. Sair, Craig K. Jones
2022	J	`jnl`	Deep Labeling of fMRI Brain Networks Using Cloud Based Processing. CoRR Sejal Ghate, Alberto Santamaría-Pang, Ivan Tarapov, Haris I. Sair, Craig K. Jones
2022	J	`jnl`	Deformable MR-CT image registration using an unsupervised, dual-channel network for neurosurgical guidance. Medical Image Anal. Runze Han, Craig K. Jones, Junghoon Lee, Pengwei Wu, Prasad Vagdargi, Ali Uneri, Patrick A. Helm, Mark G. Luciano, William S. Anderson, Jeffrey H. Siewerdsen
2022	—	`conf`	Deformable registration of MRI to intraoperative cone-beam CT of the brain using a joint synthesis and registration network. Image-Guided Procedures Runze Han, Craig K. Jones, Pengwei Wu, Prasad Vagdargi, Xiaoxuan Zhang, Ali Uneri, Junghoon Lee, Mark G. Luciano, William S. Anderson, Patrick A. Helm, Jeffrey H. Siewerdsen
2022	J	`jnl`	Multi-perspective region-based CNNs for vertebrae labeling in intraoperative long-length images. Comput. Methods Programs Biomed. Yixuan Huang, Craig K. Jones, Xinlei Zhang, Ashley Johnston, Selam Waktola, Nafi Aygun, Timothy Witham, Ali Bydon, Nicholas Theodore, Patrick A. Helm, Jeffrey H. Siewerdsen, Ali Uneri
2022	—	`conf`	Robot-assisted neuroendoscopy for real-time 3D guidance of transventricular approach to deep-brain targets. Image-Guided Procedures Prasad Vagdargi, Ali Uneri, Craig K. Jones, Pengwei Wu, Runze Han, Mark G. Luciano, William S. Anderson, Patrick A. Helm, Gregory D. Hager, Jeffrey H. Siewerdsen
2021	—	`conf`	Data-driven deformable 3D-2D registration for guiding neuroelectrode placement in deep brain stimulation. Image-Guided Procedures Ali Uneri, Pengwei Wu, Craig K. Jones, Michael D. Ketcha, Prasad Vagdargi, Runze Han, Patrick A. Helm, Mark G. Luciano, William S. Anderson, Jeffrey H. Siewerdsen
2021	—	`conf`	Deformable MR-CT image registration using an unsupervised synthesis and registration network for neuro-endoscopic surgery. Image-Guided Procedures Runze Han, Craig K. Jones, Michael D. Ketcha, Pengwei Wu, Prasad Vagdargi, Ali Uneri, Junghoon Lee, Mark G. Luciano, William S. Anderson, Jeffrey H. Siewerdsen
2021	—	`conf`	Robot-assisted ventriculoscopic 3D reconstruction for guidance of deep-brain stimulation surgery. Image-Guided Procedures Prasad Vagdargi, Ali Uneri, Craig K. Jones, Pengwei Wu, Runze Han, Mark G. Luciano, William S. Anderson, Gregory D. Hager, Jeffrey H. Siewerdsen
2020	—	`conf`	Data-driven detection and registration of spine surgery instrumentation in intraoperative images. Image-Guided Procedures Sophia A. Doerr, Ali Uneri, Yixuan Huang, Craig K. Jones, Xiaoxuan Zhang, Michael D. Ketcha, Patrick A. Helm, Jeffrey H. Siewerdsen
2020	—	`conf`	Multi-slot extended view imaging on the O-Arm: image quality and application to intraoperative assessment of spinal morphology. Image-Guided Procedures Xiaoxuan Zhang, Ali Uneri, Pengwei Wu, Michael D. Ketcha, Sophia A. Doerr, Craig K. Jones, Patrick A. Helm, Jeffrey H. Siewerdsen
2020	—	`conf`	Multi-slot intraoperative imaging and 3D-2D registration for evaluation of long surgical constructs in spine surgery. Image-Guided Procedures Ali Uneri, Xiaoxuan Zhang, Michael D. Ketcha, Sophia A. Doerr, Craig K. Jones, Patrick A. Helm, Jeffrey H. Siewerdsen
2016	J	`jnl`	Demonstration of Brain Tumor-Induced Neurovascular Uncoupling in Resting-State fMRI at Ultrahigh Field. Brain Connect. Shruti Agarwal, Haris I. Sair, Raag D. Airan, Jun Hua, Craig K. Jones, Hye-Young Heo, Alessandro Olivi, Martin A. Lindquist, James J. Pekar, Jay J. Pillai
2014	J	`jnl`	Quantitative magnetic susceptibility mapping without phase unwrapping using WASSR. NeuroImage Issel Anne L. Lim, Xu Li, Craig K. Jones, Jonathan A. D. Farrell, Deepti S. Vikram, Peter C. M. van Zijl
2013	J	`jnl`	Nuclear Overhauser enhancement (NOE) imaging in the human brain at 7 T. NeuroImage Craig K. Jones, Alan J. Huang, Jiadi Xu, Richard A. E. Edden, Michael Schär, Jun Hua, Nikita Oskolkov, Domenico Zacà, Jinyuan Zhou, Michael T. McMahon, Jay J. Pillai, Peter C. M. van Zijl
2012	J	`jnl`	Mapping magnetic susceptibility anisotropies of white matter in vivo in the human brain at 7 T. NeuroImage Xu Li, Deepti S. Vikram, Issel Anne L. Lim, Craig K. Jones, Jonathan A. D. Farrell, Peter C. M. van Zijl
2007	J	`jnl`	Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T. NeuroImage Bennett A. Landman, Jonathan A. D. Farrell, Craig K. Jones, Seth A. Smith, Jerry L. Prince, Susumu Mori
2007	J	`jnl`	Multiparametric magnetic resonance imaging analysis of the corticospinal tract in multiple sclerosis. NeuroImage Daniel S. Reich, Seth A. Smith, Kathleen M. Zackowski, Eliza M. Gordon-Lipkin, Craig K. Jones, Jonathan A. D. Farrell, Susumu Mori, Peter C. M. van Zijl, Peter A. Calabresi
2002	B	`conf`	Convex geometry for rapid tissue classification in MRI. Image Processing Erick Wong, Craig K. Jones
2002	B	`conf`	Multi-scale application of the N3 method for intensity correction of MR images. Image Processing Craig K. Jones, Erick Wong