Craig J. Benham

23 papers B 2Misc 2Journal 11Unranked 8
YearRankTypeTitle / Venue / Authors
2015 J jnl
SIST: stress-induced structural transitions in superhelical DNA.
Bioinform.
Dina Zhabinskaya, Sally Madden, Craig J. Benham
2012 J jnl
Theoretical Analysis of Competing Conformational Transitions in Superhelical DNA.
PLoS Comput. Biol.
Dina Zhabinskaya, Craig J. Benham
2011 J jnl
Theoretical Analysis of the Stress Induced B-Z Transition in Superhelical DNA.
PLoS Comput. Biol.
Dina Zhabinskaya, Craig J. Benham
2008 J jnl
Superhelical Destabilization in Regulatory Regions of Stress Response Genes.
PLoS Comput. Biol.
Huiquan Wang, Craig J. Benham
2007 J jnl
OriDB: a DNA replication origin database.
Nucleic Acids Res.
Conrad A. Nieduszynski, Shin-ichiro Hiraga, Prashanth Ak, Craig J. Benham, Anne D. Donaldson
2006 J jnl
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress.
BMC Bioinform.
Huiquan Wang, Craig J. Benham
2006 J jnl
SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes.
Nucleic Acids Res.
Huiquan Wang, Miroslava Kaloper, Craig J. Benham
2005 — conf
Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties.
Systems Biology and Regulatory Genomics
Huiquan Wang, Craig J. Benham
2005 J jnl
Susceptibility to Superhelically Driven DNA Duplex Destabilization: A Highly Conserved Property of Yeast Replication Origins.
PLoS Comput. Biol.
Prashanth Ak, Craig J. Benham
2004 — conf
Superhelically Destabilized Sites in the E. coli Genome: Implications for Promoter Prediction in Prokaryotes.
German Conference on Bioinformatics
Huiquan Wang, Craig J. Benham
2004 J jnl
The Analysis of Stress-Induced Duplex Destabilization in Long Genomic DNA Sequences.
J. Comput. Biol.
Craig J. Benham, Chengpeng Bi
2003 — conf
The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor Energetics.
CSB
Chengpeng Bi, Craig J. Benham
2001 — conf
Analysis of biomathematically predicted Scaffold / Matrix Attached Regions (S/MARs) by three different approaches.
German Conference on Bioinformatics
A. Knopp, Sandra Götze, Craig J. Benham, Matthias Frisch, Stephen A. Krawetz, Jürgen Bode
2001 — conf
Biomathematical and in vitro analysis of destabilized regions in the interferon gene cluster.
German Conference on Bioinformatics
Sandra Götze, A. Knopp, Craig J. Benham, Stephen A. Krawetz, Jürgen Bode
2001 — conf
In Silico Biology: The emergence of a new biological methodology.
HERCMA
Craig J. Benham
2001 Misc conf
Stress-Induced DNA Duplex Destabilization in Transcriptional Initiation.
Pacific Symposium on Biocomputing
Craig J. Benham
1998 B conf
A formally exact method to numerically analyze local denaturation in superhelical DNA.
RECOMB
Richard M. Fye, Craig J. Benham
1998 — conf
The topologically driven strand separation transition in DNA - methods of analysis and biological significance.
Mathematical Support for Molecular Biology
Craig J. Benham
1997 Misc conf
DNA Strand Separation Prediction: A Parallel Implementation.
PDPTA
Gabriela Hristescu, Craig J. Benham, Martin Farach
1996 J jnl
Computation of DNA structural variability - a new predictor of DNA regulatory regions.
Comput. Appl. Biosci.
Craig J. Benham
1996 — conf
Sites of Superhelical DNA Duplex Destabilization occour at Specific Regulatory Regions.
German Conference on Bioinformatics
Craig J. Benham
1995 J jnl
Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility.
J. Comput. Biol.
Craig J. Benham, Sampath Kannan, Michael Paterson, Tandy J. Warnow
1995 B conf
Of Chicken Teeth and Mouse Eyes, or Generalized Character Compatibility.
CPM
Craig J. Benham, Sampath Kannan, Tandy J. Warnow