Congting Ye

12 papers Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq.
Genom. Proteom. Bioinform.
Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu
2021 J jnl
QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering.
Briefings Bioinform.
Congting Ye, Danhui Zhao, Wenbin Ye, Xiaohui Wu, Guoli Ji, Qingshun Quinn Li, Juncheng Lin
2021 J jnl
movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples.
Bioinform.
Wenbin Ye, Tao Liu, Hongjuan Fu, Congting Ye, Guoli Ji, Xiaohui Wu
2021 J jnl
scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data.
Briefings Bioinform.
Xiaohui Wu, Tao Liu, Congting Ye, Wenbin Ye, Guoli Ji
2020 J jnl
A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data.
Briefings Bioinform.
Moliang Chen, Guoli Ji, Hongjuan Fu, Qianmin Lin, Congting Ye, Wenbin Ye, Yaru Su, Xiaohui Wu
2020 J jnl
scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data.
Bioinform.
Congting Ye, Qian Zhou, Xiaohui Wu, Chen Yu, Guoli Ji, Daniel R. Saban, Qingshun Quinn Li
2020 J jnl
scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size.
Bioinform.
Pengchao Ye, Wenbin Ye, Congting Ye, Shuchao Li, Lishan Ye, Guoli Ji, Xiaohui Wu
2018 J jnl
AEGS: identifying aberrantly expressed gene sets for differential variability analysis.
Bioinform.
Jinting Guan, Moliang Chen, Congting Ye, James J. Cai, Guoli Ji
2018 J jnl
APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data.
Bioinform.
Congting Ye, Yuqi Long, Guoli Ji, Qingshun Quinn Li, Xiaohui Wu
2018 J jnl
TSAPA: identification of tissue-specific alternative polyadenylation sites in plants.
Bioinform.
Guoli Ji, Moliang Chen, Wenbin Ye, Sheng Zhu, Congting Ye, Yaru Su, Haonan Peng, Xiaohui Wu
2017 J jnl
PAcluster: Clustering polyadenylation site data using canonical correlation analysis.
J. Bioinform. Comput. Biol.
Guoli Ji, Qianmin Lin, Yuqi Long, Congting Ye, Wenbin Ye, Xiaohui Wu
2009 — conf
A Novel Method for Progressive Multiple Sequence Alignment Based on Lempel-Ziv.
ICONIP (1)
Guoli Ji, Congting Ye, Zijiang Yang, Zhenya Guo