Clifford A. Meyer

15 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.
Bioinform.
Sehi L'Yi, Mark S. Keller, Ariaki Dandawate, Len Taing, Chen-Hao Chen, Myles Brown, Clifford A. Meyer, Nils Gehlenborg
2020 J jnl
Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data.
Quant. Biol.
Rongbin Zheng, Xin Dong, Changxin Wan, Xiaoying Shi, Xiaoyan Zhang, Clifford A. Meyer
2019 J jnl
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.
Nucleic Acids Res.
Rongbin Zheng, Changxin Wan, Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Chen-Hao Chen, Myles Brown, Xiaoyan Zhang, Clifford A. Meyer, Xiaole Shirley Liu
2019 J jnl
Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks.
Nucleic Acids Res.
Shaojuan Li, Changxin Wan, Rongbin Zheng, Jingyu Fan, Xin Dong, Clifford A. Meyer, Xiaole Shirley Liu
2018 J jnl
Improved design and analysis of CRISPR knockout screens.
Bioinform.
Chen-Hao Chen, Tengfei Xiao, Han Xu, Peng Jiang, Clifford A. Meyer, Wei Li, Myles Brown, Xiaole Shirley Liu
2017 J jnl
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.
Nucleic Acids Res.
Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Rongbin Zheng, Chongzhi Zang, Muyuan Zhu, Jiaxin Wu, Xiaohui Shi, Len Taing, Tao Liu, Myles Brown, Clifford A. Meyer, Xiaole Shirley Liu
2016 J jnl
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.
BMC Bioinform.
Qian Qin, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Han Xu, Yiwen Chen, Clifford A. Meyer, Yong Zhang, Myles Brown, Henry Long
2012 J jnl
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.
Bioinform.
Jianxing Feng, Clifford A. Meyer, Qian Wang, Jun S. Liu, Xiaole Shirley Liu, Yong Zhang
2011 J jnl
BINOCh: binding inference from nucleosome occupancy changes.
Bioinform.
Clifford A. Meyer, Housheng H. He, Myles Brown, Xiaole Shirley Liu
2011 J jnl
CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data.
Nucleic Acids Res.
Qingyi Cao, Meng Zhou, Xujun Wang, Clifford A. Meyer, Yong Zhang, Zhi Chen, Cheng Li, Xiaole Shirley Liu
2005 — conf
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.
ISMB (Supplement of Bioinformatics)
Wei Li, Clifford A. Meyer, Xiaole Shirley Liu
2005 J jnl
Convex Underestimation of Twice Continuously Differentiable Functions by Piecewise Quadratic Perturbation: Spline αBB Underestimators.
J. Glob. Optim.
Clifford A. Meyer, Christodoulos A. Floudas
2005 J jnl
Convex envelopes for edge-concave functions.
Math. Program.
Clifford A. Meyer, Christodoulos A. Floudas
2005 J jnl
Global optimization in the 21st century: Advances and challenges.
Comput. Chem. Eng.
Christodoulos A. Floudas, Ioannis G. Akrotirianakis, S. Caratzoulas, Clifford A. Meyer, Josef Kallrath
2004 J jnl
Trilinear Monomials with Mixed Sign Domains: Facets of the Convex and Concave Envelopes.
J. Glob. Optim.
Clifford A. Meyer, Christodoulos A. Floudas