Claudine Médigue

18 papers A 2Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2025 — conf
A multi-modal and temporal antibiotic resistance knowledge graph.
SWAT4HCLS
Brieuc Quemeneur, Audrey Bihouée, Samuel Chaffron, Claudine Médigue, Hervé Ménager, Alban Gaignard
2021 J jnl
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
PLoS Comput. Biol.
Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, Mathieu Dubois, Amandine Perrin, Claudine Médigue, Alexandra Calteau, Stéphane Cruveiller, Catherine Matias, Christophe Ambroise, Eduardo P. C. Rocha, David Vallenet
2020 J jnl
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.
Nucleic Acids Res.
David Vallenet, Alexandra Calteau, Mathieu Dubois, Paul Amours, Adelme Bazin, Mylène Beuvin, Laura Burlot, Xavier Bussell, Stéphanie Fouteau, Guillaume Gautreau, Aurélie Lajus, Jordan Langlois, Rémi Planel, David Roche, Johan Rollin, Zoé Rouy, Valentin Sabatet, Claudine Médigue
2020 J jnl
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
PLoS Comput. Biol.
Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, Mathieu Dubois, Amandine Perrin, Claudine Médigue, Alexandra Calteau, Stéphane Cruveiller, Catherine Matias, Christophe Ambroise, Eduardo P. C. Rocha, David Vallenet
2020 J jnl
panRGP: a pangenome-based method to predict genomic islands and explore their diversity.
Bioinform.
Adelme Bazin, Guillaume Gautreau, Claudine Médigue, David Vallenet, Alexandra Calteau
2019 J jnl
MicroScope - an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
Briefings Bioinform.
Claudine Médigue, Alexandra Calteau, Stéphane Cruveiller, Mathieu Gachet, Guillaume Gautreau, Adrien Josso, Aurélie Lajus, Jordan Langlois, Hugo Pereira, Rémi Planel, David Roche, Johan Rollin, Zoé Rouy, David Vallenet
2018 J jnl
GROOLS: reactive graph reasoning for genome annotation through biological processes.
BMC Bioinform.
Jonathan Mercier, Adrien Josso, Claudine Médigue, David Vallenet
2017 J jnl
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.
Nucleic Acids Res.
David Vallenet, Alexandra Calteau, Stéphane Cruveiller, Mathieu Gachet, Aurélie Lajus, Adrien Josso, Jonathan Mercier, Alexandre Renaux, Johan Rollin, Zoé Rouy, David Roche, Claude Scarpelli, Claudine Médigue
2015 J jnl
A new network representation of the metabolism to detect chemical transformation modules.
BMC Bioinform.
Maria Sorokina, Claudine Médigue, David Vallenet
2013 J jnl
MicroScope - an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
Nucleic Acids Res.
David Vallenet, Eugeni Belda, Alexandra Calteau, Stéphane Cruveiller, Stefan Engelen, Aurélie Lajus, François Le Fèvre, Cyrille Longin, Damien Mornico, David Roche, Zoé Rouy, Gregory Salvignol, Claude Scarpelli, Adam Alexander Thil Smith, Marion Weiman, Claudine Médigue
2012 J jnl
The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes.
PLoS Comput. Biol.
Adam Alexander Thil Smith, Eugeni Belda, Alain Viari, Claudine Médigue, David Vallenet
2009 J jnl
MicroScope: a platform for microbial genome annotation and comparative genomics.
Database J. Biol. Databases Curation
David Vallenet, Stefan Engelen, Damien Mornico, Stéphane Cruveiller, Ludovic Fleury, Aurélie Lajus, Zoé Rouy, David Roche, Gregory Salvignol, Claude Scarpelli, Claudine Médigue
2005 J jnl
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.
Nucleic Acids Res.
Stéphane Cruveiller, Jérôme Le Saux, David Vallenet, Aurélie Lajus, Stéphanie Bocs, Claudine Médigue
2003 J jnl
AMIGene: Annotation of MIcrobial Genes.
Nucleic Acids Res.
Stéphanie Bocs, Stéphane Cruveiller, David Vallenet, Grégory Nuel, Claudine Médigue
2002 J jnl
Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes.
BMC Bioinform.
Stéphanie Bocs, Antoine Danchin, Claudine Médigue
1999 J jnl
Imagene: an integrated computer environment for sequence annotation and analysis.
Bioinform.
Claudine Médigue, François Rechenmann, Antoine Danchin, Alain Viari
1995 A conf
Cooperative Computer System For Genome Sequence Analysis.
ISMB
Claudine Médigue, Thierry Vermat, Gilles Bisson, Alain Viari, Antoine Danchin
1993 A conf
Building Large Knowledge Bases in Molecular Biology.
ISMB
Olivier Schmeltzer, Claudine Médigue, P. Uvietta, François Rechenmann, Frank Dorkeld, Guy Perrière, Christian Gautier