Claire Lemaitre

20 papers Journal 16Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Mapler: a pipeline for assessing assembly quality in taxonomically rich metagenomes sequenced with HiFi reads.
Bioinform.
Nicolas Maurice, Claire Lemaitre, Riccardo Vicedomini, Clémence Frioux
2025 J jnl
Pairwise graph edit distance characterizes the impact of the construction method on pangenome graphs.
Bioinform.
Siegfried Dubois, Matthias Zytnicki, Claire Lemaitre, Thomas Faraut
2023 J jnl
MTG-Link: leveraging barcode information from linked-reads to assemble specific loci.
BMC Bioinform.
Anne Guichard, Fabrice Legeai, Denis Tagu, Claire Lemaitre
2023 J jnl
SVJedi-graph: improving the genotyping of close and overlapping structural variants with long reads using a variation graph.
Bioinform.
Sandra Romain, Claire Lemaitre
2021 — book
Méthodes bioinformatiques pour l'étude des Variants de Structure avec des données de séquençages génomiques.
Claire Lemaitre
2020 J jnl
SVJedi: genotyping structural variations with long reads.
Bioinform.
Lolita Lecompte, Pierre Peterlongo, Dominique Lavenier, Claire Lemaitre
2020 J jnl
SimkaMin: fast and resource frugal de novo comparative metagenomics.
Bioinform.
Gaëtan Benoit, Mahendra Mariadassou, Stéphane Robin, Sophie Schbath, Pierre Peterlongo, Claire Lemaitre
2017 — ch.
De Novo NGS Data Compression.
Algorithms for Next-Generation Sequencing Data
Gaëtan Benoit, Claire Lemaitre, Guillaume Rizk, Erwan Drezen, Dominique Lavenier
2016 J jnl
Multiple comparative metagenomics using multiset
PeerJ Comput. Sci.
Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre
2015 J jnl
Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph.
BMC Bioinform.
Gaëtan Benoit, Claire Lemaitre, Dominique Lavenier, Erwan Drezen, Thibault Dayris, Raluca Uricaru, Guillaume Rizk
2014 J jnl
Compression of high throughput sequencing data with probabilistic de Bruijn graph.
CoRR
Gaëtan Benoit, Claire Lemaitre, Dominique Lavenier, Guillaume Rizk
2014 J jnl
GATB: Genome Assembly & Analysis Tool Box.
Bioinform.
Erwan Drezen, Guillaume Rizk, Rayan Chikhi, Charles Deltel, Claire Lemaitre, Pierre Peterlongo, Dominique Lavenier
2014 — conf
Mapping-Free and Assembly-Free Discovery of Inversion Breakpoints from Raw NGS Reads.
AlCoB
Claire Lemaitre, Liviu Ciortuz, Pierre Peterlongo
2014 J jnl
MindTheGap: integrated detection and assembly of short and long insertions.
Bioinform.
Guillaume Rizk, Anaïs Gouin, Rayan Chikhi, Claire Lemaitre
2012 J jnl
Compareads: comparing huge metagenomic experiments.
BMC Bioinform.
Nicolas Maillet, Claire Lemaitre, Rayan Chikhi, Dominique Lavenier, Pierre Peterlongo
2011 J jnl
A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships.
BMC Bioinform.
Claire Lemaitre, Aurélien Barré, Christine Citti, Florence Tardy, Francois Thiaucourt, Pascal Sirand-Pugnet, Patricia Thébault
2010 J jnl
Cassis: detection of genomic rearrangement breakpoints.
Bioinform.
Christian Baudet, Claire Lemaitre, Zanoni Dias, Christian Gautier, Eric Tannier, Marie-France Sagot
2008 J jnl
A small trip in the untranquil world of genomes: A survey on the detection and analysis of genome rearrangement breakpoints.
Theor. Comput. Sci.
Claire Lemaitre, Marie-France Sagot
2008 J jnl
Precise detection of rearrangement breakpoints in mammalian chromosomes.
BMC Bioinform.
Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot
2008 — —
Réarrangements chromosomiques dans les génomes de mammifères : caractérisation des points de cassure. (Chromosomal rearrangements in mammalian genomes : characterising the breakpoints).
Claire Lemaitre