Cinzia Pizzi

46 papers A 1B 3C 7Journal 24Unranked 11
YearRankTypeTitle / Venue / Authors
2025 — conf
DuoHash: Fast Hashing of Spaced Seeds with Application to Spaced K-mers Counting.
ICCABS
Leonardo Gemin, Cinzia Pizzi, Matteo Comin
2025 — conf
Machine Learning Methods for Phenotype Prediction from High-Dimensional, Low Population Aquaculture Data.
BIOSTEC (1)
Giovanni Faldani, Enrico Rossignolo, Eleonora Signor, Alessio Longo, Sara Faggion, Luca Bargelloni, Matteo Comin, Cinzia Pizzi
2025 J jnl
MetaComBin: combining abundances and overlaps for binning metagenomics reads.
Frontiers Bioinform.
Francesco Tomasella, Cinzia Pizzi
2024 J jnl
MISSH: Fast Hashing of Multiple Spaced Seeds.
IEEE ACM Trans. Comput. Biol. Bioinform.
Eleonora Mian, Enrico Petrucci, Cinzia Pizzi, Matteo Comin
2023 — conf
Efficient Hashing of Multiple Spaced Seeds with Application.
BIOINFORMATICS
Eleonora Mian, Enrico Petrucci, Cinzia Pizzi, Matteo Comin
2023 — conf
On Multi-phase Metagenomics Reads Binning.
ICCABS
Francesco Tomasella, Cinzia Pizzi
2021 J jnl
Comparison of microbiome samples: methods and computational challenges.
Briefings Bioinform.
Matteo Comin, Barbara Di Camillo, Cinzia Pizzi, Fabio Vandin
2021 J jnl
MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics.
J. Comput. Biol.
Francesco Andreace, Cinzia Pizzi, Matteo Comin
2020 J jnl
Fast Approximation of Frequent k-Mers and Applications to Metagenomics.
J. Comput. Biol.
Leonardo Pellegrina, Cinzia Pizzi, Fabio Vandin
2020 J jnl
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing.
J. Comput. Biol.
Enrico Petrucci, Laurent Noé, Cinzia Pizzi, Matteo Comin
2020 — conf
MetaProb 2: Improving Unsupervised Metagenomic Binning with Efficient Reads Assembly Using Minimizers.
ICCABS
Francesco Andreace, Cinzia Pizzi, Matteo Comin
2019 B conf
Fast Approximation of Frequent k-mers and Applications to Metagenomics.
RECOMB
Leonardo Pellegrina, Cinzia Pizzi, Fabio Vandin
2019 — conf
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing.
ISBRA
Enrico Petrucci, Laurent Noé, Cinzia Pizzi, Matteo Comin
2018 J jnl
Efficient Algorithms for Sequence Analysis with Entropic Profiles.
IEEE ACM Trans. Comput. Biol. Bioinform.
Cinzia Pizzi, Mattia Ornamenti, Simone Spangaro, Simona E. Rombo, Laxmi Parida
2018 J jnl
FSH: fast spaced seed hashing exploiting adjacent hashes.
Algorithms Mol. Biol.
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2017 J jnl
A new distributed alignment-free approach to compare whole proteomes.
Theor. Comput. Sci.
Umberto Ferraro Petrillo, Concettina Guerra, Cinzia Pizzi
2017 C conf
Binning metagenomic reads with probabilistic sequence signatures based on spaced seeds.
CIBCB
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2017 — conf
Consensus-based anomaly detection for efficient heating management.
SmartWorld/SCALCOM/UIC/ATC/CBDCom/IOP/SCI
Francesco Carbone, Angelo Cenedese, Cinzia Pizzi
2017 C conf
Fast Spaced Seed Hashing.
WABI
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2017 A conf
How User Condition Affects Community Dynamics in a Forum on Autism.
ICWSM
Mattia Samory, Cinzia Pizzi, Enoch Peserico
2017 J jnl
Metagenomic reads binning with spaced seeds.
Theor. Comput. Sci.
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2016 — conf
Higher recall in metagenomic sequence classification exploiting Overlapping Reads.
ICCABS
Samuele Girotto, Matteo Comin, Cinzia Pizzi
2016 J jnl
MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
Bioinform.
Samuele Girotto, Cinzia Pizzi, Matteo Comin
2016 J jnl
MissMax: alignment-free sequence comparison with mismatches through filtering and heuristics.
Algorithms Mol. Biol.
Cinzia Pizzi
2016 J jnl
Sequence similarity measures based on bounded hamming distance.
Theor. Comput. Sci.
Alberto Apostolico, Concettina Guerra, Gad M. Landau, Cinzia Pizzi
2015 C conf
A Filtering Approach for Alignment-Free Biosequences Comparison with Mismatches.
WABI
Cinzia Pizzi
2014 B conf
Alignment Free Sequence Similarity with Bounded Hamming Distance.
DCC
Alberto Apostolico, Concettina Guerra, Cinzia Pizzi
2014 C conf
Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences.
WABI
Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
2014 J jnl
Irredundant tandem motifs.
Theor. Comput. Sci.
Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
2012 C conf
Characterization and Extraction of Irredundant Tandem Motifs.
SPIRE
Laxmi Parida, Cinzia Pizzi, Simona E. Rombo
2012 J jnl
Efficient algorithms for the periodic subgraphs mining problem.
J. Discrete Algorithms
Alberto Apostolico, Péter L. Erdös, Ervin Györi, Zsuzsanna Lipták, Cinzia Pizzi
2011 J jnl
Efficient algorithms for the discovery of gapped factors.
Algorithms Mol. Biol.
Alberto Apostolico, Cinzia Pizzi, Esko Ukkonen
2011 J jnl
Finding Significant Matches of Position Weight Matrices in Linear Time.
IEEE ACM Trans. Comput. Biol. Bioinform.
Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
2011 J jnl
Speedup for a periodic subgraph miner.
Inf. Process. Lett.
Alberto Apostolico, Manuel Barbares, Cinzia Pizzi
2010 — conf
Efficient computation of statistics for words with mismatches.
Structure Discovery in Biology: Motifs, Networks & Phylogenies
Cinzia Pizzi
2009 C conf
Expectation of Strings with Mismatches under Markov Chain Distribution.
SPIRE
Cinzia Pizzi, Mauro Bianco
2009 J jnl
MOODS: fast search for position weight matrix matches in DNA sequences.
Bioinform.
Janne H. Korhonen, Petri Martinmäki, Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
2009 J jnl
k-difference matching in amortized linear time for all the words in a text.
Theor. Comput. Sci.
Cinzia Pizzi
2008 J jnl
Fast profile matching algorithms - A survey.
Theor. Comput. Sci.
Cinzia Pizzi, Esko Ukkonen
2008 J jnl
Scoring Unusual Words with Varying Mismatch Errors.
Math. Comput. Sci.
Alberto Apostolico, Cinzia Pizzi
2007 — conf
Fast Search Algorithms for Position Specific Scoring Matrices.
BIRD
Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
2007 J jnl
Motif discovery by monotone scores.
Discret. Appl. Math.
Alberto Apostolico, Cinzia Pizzi
2006 — conf
On the Monotonicity of the String Correction Factor for Words with Mismatches.
Combinatorial and Algorithmic Foundations of Pattern and Association Discovery
Alberto Apostolico, Cinzia Pizzi
2005 J jnl
A multistep bioinformatic approach detects putative regulatory elements in gene promoters.
BMC Bioinform.
Stefania Bortoluzzi, Alessandro Coppe, Andrea Bisognin, Cinzia Pizzi, Gian Antonio Danieli
2004 C conf
Monotone Scoring of Patterns with Mismatches: (Extended Abstract).
WABI
Alberto Apostolico, Cinzia Pizzi
2004 B conf
Optimal Discovery of Subword Associations in Strings.
Discovery Science
Alberto Apostolico, Cinzia Pizzi, Giorgio Satta