Chunyu Liu

24 papers C 2Journal 14Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
Precision and Accuracy in Quantitative Measurement of Gene Expression from Single-cell/nucleus RNA Sequencing Data.
Genom. Proteom. Bioinform.
Rujia Dai, Ming Zhang, Tianyao Chu, Richard Kopp, Chunling Zhang, Kefu Liu, Yue Wang, Xusheng Wang, Chao Chen, Chunyu Liu
2024 J jnl
CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution.
Bioinform.
Chiung-Ting Wu, Dongping Du, Lulu Chen, Rujia Dai, Chunyu Liu, Guoqiang Yu, Saurabh Bhardwaj, Sarah J. Parker, Zhen Zhang, Robert Clarke, David M. Herrington, Yue Wang
2024 J jnl
DDN3.0: determining significant rewiring of biological network structure with differential dependency networks.
Bioinform.
Yi Fu, Yingzhou Lu, Yizhi Wang, Bai Zhang, Zhen Zhang, Guoqiang Yu, Chunyu Liu, Robert Clarke, David M. Herrington, Yue Wang
2022 J jnl
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution.
Bioinform.
Lulu Chen, Chiung-Ting Wu, Chia-Hsiang Lin, Rujia Dai, Chunyu Liu, Robert Clarke, Guoqiang Yu, Jennifer E. Van Eyk, David M. Herrington, Yue Wang
2020 J jnl
DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data.
PLoS Comput. Biol.
Yi Jiang, Gina Giase, Kay Grennan, Annie W. Shieh, Yan Xia, Lide Han, Quan Wang, Qiang Wei, Rui Chen, Sihan Liu, Kevin P. White, Chao Chen, Bingshan Li, Chunyu Liu
2019 J jnl
BrainEXP: a database featuring with spatiotemporal expression variations and co-expression organizations in human brains.
Bioinform.
Chuan Jiao, Pengpeng Yan, Cuihua Xia, Zhaoming Shen, Zexi Tan, Yanyan Tan, Kangli Wang, Yi Jiang, Lingling Huang, Rujia Dai, Yu Wei, Yan Xia, Qingtuan Meng, Yanmei Ouyang, Liu Yi, Fangyuan Duan, Jiacheng Dai, Shunan Zhao, Chunyu Liu, Chao Chen
2017 J jnl
Identifying cis/trans-acting expression quantitative trait loci (eQTL).
Int. J. Data Min. Bioinform.
Mingon Kang, Dong-Chul Kim, Chunyu Liu, Jean Gao
2017 J jnl
Integration of multi-omics data for integrative gene regulatory network inference.
Int. J. Data Min. Bioinform.
Neda Zarayeneh, Euiseong Ko, Jung Hun Oh, Sang C. Suh, Chunyu Liu, Jean Gao, Donghyun Kim, Mingon Kang
2017 J jnl
Multi-Block Bipartite Graph for Integrative Genomic Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform.
Mingon Kang, Juyoung Park, Dong-Chul Kim, Ashis Kumer Biswas, Chunyu Liu, Jean Gao
2016 — conf
Integrative Gene Regulatory Network inference using multi-omics data.
BIBM
Neda Zarayeneh, Jung Hun Oh, Donghyun Kim, Chunyu Liu, Jean Gao, Sang C. Suh, Mingon Kang
2015 — conf
An integrative genomic study for multimodal genomic data using multi-block bipartite graph.
BIBM
Mingon Kang, Juyoung Park, Dong-Chul Kim, Ashis Kumer Biswas, Chunyu Liu, Jean Gao
2015 — conf
Integrative approach for inference of gene regulatory networks using lasso-based random featuring and application to Psychiatric disorders.
BIBM
Dong-Chul Kim, Mingon Kang, Ashis Kumer Biswas, Chunyu Liu, Jean Gao
2015 J jnl
eQTL epistasis: detecting epistatic effects and inferring hierarchical relationships of genes in biological pathways.
Bioinform.
Mingon Kang, Chunling Zhang, Hyung-Wook Chun, Chris H. Q. Ding, Chunyu Liu, Jean Gao
2014 C conf
Integration of DNA Methylation, Copy Number Variation, and Gene Expression for Gene Regulatory Network Inference and Application to Psychiatric Disorders.
BIBE
Dong-Chul Kim, Mingon Kang, Baoju Zhang, Xiaoyong Wu, Chunyu Liu, Jean Gao
2014 C conf
Multi-block and Multi-task Learning for Integrative Genomic Study.
BIBE
Mingon Kang, Dong-Chul Kim, Chunyu Liu, Baoju Zhang, Xiaoyong Wu, Jean Gao
2013 — conf
Inference of gene regulatory networks by integrating gene expressions and genetic perturbations.
BIBM
Dong-Chul Kim, Chunyu Liu, Xiaoyong Wu, Baoju Zhang, Jean Gao
2013 — conf
Sparse generalized canonical correlation analysis for biological model integration: A genetic study of psychiatric disorders.
EMBC
Mingon Kang, Baoju Zhang, Xiaoyong Wu, Chunyu Liu, Jean Gao
2013 — conf
eQTL Mapping Study via Regularized Sparse Canonical Correlation Analysis.
ICMLA (1)
Mingon Kang, Shuo Li, Dong-Chul Kim, Chunyu Liu, Baoju Zhang, Xiaoyong Wu, Jean Gao
2013 — conf
eQTL epistasis: Detecting complex interaction effects between multiple loci from eQTL data.
BIBM
Mingon Kang, Shuo Li, Chunyu Liu, Jean Gao
2010 — conf
Definition and analysis of SNP-free regions of current genome wide association study databases.
BIC-TA
Rang Qiu, Min Wu, Chunyu Liu, Hang Jiang, Lingyun Fu
2006 J jnl
MutScreener: primer design tool for PCR-direct sequencing.
Nucleic Acids Res.
Fengxia Yao, Ruifang Zhang, Zanhua Zhu, Kun Xia, Chunyu Liu
2005 J jnl
SNP Cutter: a comprehensive tool for SNP PCR-RFLP assay design.
Nucleic Acids Res.
Ruifang Zhang, Zanhua Zhu, Hongming Zhu, Tu H. Nguyen, Fengxia Yao, Kun Xia, Desheng Liang, Chunyu Liu
2004 J jnl
Frequency Finder: a multi-source web application for collection of public allele frequencies of SNP markers.
Bioinform.
Tu H. Nguyen, Chunyu Liu, Elliot S. Gershon, Francis J. McMahon
2003 J jnl
DNannotator: annotation software tool kit for regional genomic sequences.
Nucleic Acids Res.
Chunyu Liu, Tom I. Bonner, Tu H. Nguyen, Jennifer L. Lyons, Susan L. Christian, Elliot S. Gershon